Factsheet for Os08t0243866-00

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
extracellular 3
endoplasmic reticulum 5
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0434500-01	Rice	cytoskeleton, cytosol, nucleus	69.19	66.52
Os06t0255700-01	Rice	cytosol	69.35	47.36
VIT_06s0004g08480.t01	Wine grape	mitochondrion, plastid	48.92	46.4
TraesCS2B01G208700.1	Wheat	cytosol	65.17	45.96
TraesCS2D01G189900.1	Wheat	nucleus	65.63	44.54
VIT_03s0038g04290.t01	Wine grape	nucleus	15.17	44.34
KXG24379	Sorghum	cytosol	66.41	44.23
Zm00001d024677_P003	Maize	cytosol	64.55	43.89
HORVU2Hr1G034330.2	Barley	mitochondrion, nucleus, plastid	65.17	43.18
TraesCS5A01G340400.1	Wheat	nucleus	63.62	42.9
Zm00001d049605_P037	Maize	cytosol	64.86	42.89
TraesCS5D01G344400.1	Wheat	nucleus	63.47	42.8
HORVU5Hr1G085320.1	Barley	plastid	63.16	41.85
TraesCS2A01G182200.1	Wheat	plastid	65.63	40.81
Bra021841.1-P	Field mustard	cytosol	45.98	38.87
KRH27453	Soybean	cytosol	51.24	37.49
Solyc01g109970.2.1	Tomato	extracellular	50.62	36.05
AT2G16390.2	Thale cress	nucleus	49.54	35.91
PGSC0003DMT400079488	Potato	nucleus	50.31	35.14
KRH20806	Soybean	cytosol	51.55	34.94
CDX89710	Canola	nucleus	45.36	33.91
VIT_03s0038g00030.t01	Wine grape	nucleus	48.76	33.12
Os08t0289400-00	Rice	cytosol, nucleus	26.63	32.58
GSMUA_Achr6P04530_001	Banana	nucleus	41.02	29.88
Bra000888.1-P	Field mustard	cytosol	19.35	27.23
Os03t0165266-00	Rice	nucleus	44.74	26.91
Os05t0392400-01	Rice	cytosol, nucleus	18.42	26.44
Os07t0692600-01	Rice	mitochondrion	19.35	26.32
Os02t0650800-00	Rice	cytosol	26.16	18.04
Os05t0247900-01	Rice	plastid	16.72	12.62
Os01t0636700-01	Rice	cytoskeleton, cytosol, nucleus	8.05	11.09
Os04t0692750-01	Rice	cytosol	16.72	10.94
Os01t0102800-01	Rice	cytosol, nucleus, plastid	15.48	10.91
Os02t0762800-00	Rice	nucleus	16.25	10.71
Os10t0457700-01	Rice	nucleus	19.5	9.55
Os02t0161200-01	Rice	nucleus	2.79	4.23
Os07t0692401-00	Rice	mitochondrion	0.31	0.41
Os07t0692500-01	Rice	cytosol	0.15	0.18
Os04t0692700-01	Rice	nucleus	0.0	0.0
Os02t0762600-01	Rice	cytosol	0.0	0.0
Os02t0161300-01	Rice	extracellular	0.0	0.0

Protein Annotations

MapMan:12.4.1.3.3	MapMan:12.5.1.14.1	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	UniProt:A0A0P0XDE3	ProteinID:BAT04516.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR038718
EnsemblPlantsGene:Os08g0243866	EnsemblPlants:Os08t0243866-00	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF807	SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf
InterPro:SNF2_N	SUPFAM:SSF52540	SignalP:SignalP-noTM	UniParc:UPI000393BC1C	SEG:seg	:

Description

Similar to chromatin remodeling complex subunit. (Os08t0243866-00)

Coordinates

chr8:-:8789627..8792452

Molecular Weight (calculated)

72949.7 Da

IEP (calculated)

5.872

GRAVY (calculated)

-0.131

Length

646 amino acids

Sequence
(BLAST)

001: NHKIHAFEVN LCLVCILIIC FGQLDTSEVN NKKQLDNCNH DIHVYEDLGH VCHECGLVVR KADSLFHYQW KKASRKRTNV NEVCLKKVGS DAISLSEDFI
101: FSDIAIHPRH AKNIRPHQLE GFKFLVNNLV TDEPGGCILV HAPGSGEIFM LISFIQGFMA RHFTARPLVV LPEGILGTWK REFQQWQVED IPLYDFDSIK
201: ADNRVEQLEV LKSWSSKRSI LFVGSKHFTQ IVCDDRDENA VAECRDTLLM VPSLLILDEG HTPSIDETDM LQSARKVQTP CKVVMSGTLF HNHVKEVFNT
301: LDLVRPGFLK TETFWPIVTR MMGQLEISSA RSITEISESM EDTLLNDDNF TRKVNVIRSL GELTKDVLHY CKGEDLNEFP VLLDFSVFLE LSPKQKDILC
401: KLEEDHGMLK TSAVGAALYV HPCLSEISEA NDVDRDDRVD SLVNSINLGD GVKARFFLNI LALANSAGEK LVAFSQYTLP MKFLERLLVK EMGWHVGKEI
501: FVINGDTSME DGQLAMDQFN GSADAKVLFG SIKAFGEGIS LVGASRIVIL DVHLNPSVTR QAIGSTFRPG QKKKVFVYRL VAADSPEEKA HETAFNKEVI
601: PKLWFQWSGR CTTEDFKLNQ VCIDGSRDEL LETDVIRQDI KALYQR

Best Arabidopsis Sequence Match ( AT2G16390.1 )
(BLAST)

001: MGFVYIVMTG YYKNVHKRKQ NQVDDGPEAK RVKSSAKVID YSNPFAVSNM LEALDSGKFG SVSKELEEIA DMRMDLVKRS IWLYPSLAYT VFEAEKTMDN
101: QQVVEGVINL DDDDDDDTDV EKKALCVVPS SSEIVLLDSD DEDNERQRPM YQFQSTLVQH QKNQGDVTPL IPQCSFEEVD LGRGKEMPSA IKAIVEGQTS
201: RGKVLPIENG VVNEKGVYVG VEEDDSDNES EAADEDLGNI WNEMALSIEC SKDVARETSH KEKADVVEDC EHSFILKDDM GYVCRVCGVI EKSILEIIDV
301: QFTKAKRNTR TYASETRTKR FGESDNELKF SEEGLMIGGL AAHPTHAAEM KPHQIEGFQF LCSNLVADDP GGCIMAHAPG SGKTFMIISF MQSFLAKYPQ
401: AKPLVVLPKG ILPTWKKEFV RWQVEDIPLL DFYSAKAENR AQQLSILKQW MEKKSILFLG YQQFSTIVCD DTTDSLSCQE ILLKVPSILI LDEGHTPRNE
501: DTNLLQSLAQ VQTPRKVVLS GTLYQNHVKE VFNILNLVRP KFLKLDTSKS AVKRILAYTP CDVRGRLTGS NSDMASMFNE TVEHTLQKSE DFTVKIKVIQ
601: DLREMTKKVL HYYKGDFLDE LPGLADFTVV LNLSPKQLNE VKKLRREKRK FKVSAVGSAI YLHPKLKVFS DKSDDVSDTT MDEMVEKLDL NEGVKAKFFL
701: NLINLCDSAG EKLLVFSQYL IPLKFLERLA ALAKGWKLGK EVFVLTGNTS SEQREWSMET FNSSPDAKIF FGSIKACGEG ISLVGASRIL ILDVPLNPSV
801: TRQAIGRAFR PGQKKMVHAY RLIAGSSPEE EDHNTCFKKE VISKMWFEWN EYCGYQNFEV ETIDVDEAGD TFLESPALRE DIRVLYKR

Arabidopsis Description

DRD1SNF2 domain-containing protein / helicase domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8B0G3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.