Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g109970.2.1 | Tomato | extracellular | 95.24 | 97.13 |
| VIT_06s0004g08480.t01 | Wine grape | mitochondrion, plastid | 44.54 | 60.5 |
| Os07t0434500-01 | Rice | cytoskeleton, cytosol, nucleus | 41.84 | 57.59 |
| KRH27453 | Soybean | cytosol | 53.95 | 56.51 |
| VIT_03s0038g04290.t01 | Wine grape | nucleus | 12.86 | 53.85 |
| AT2G16390.2 | Thale cress | nucleus | 50.27 | 52.19 |
| CDX89710 | Canola | nucleus | 48.22 | 51.62 |
| KRH20806 | Soybean | cytosol | 53.08 | 51.52 |
| VIT_03s0038g00030.t01 | Wine grape | nucleus | 52.11 | 50.68 |
| Os08t0243866-00 | Rice | endoplasmic reticulum | 35.14 | 50.31 |
| Bra021841.1-P | Field mustard | cytosol | 40.76 | 49.35 |
| HORVU2Hr1G024970.1 | Barley | nucleus | 16.97 | 48.01 |
| TraesCS2B01G208700.1 | Wheat | cytosol | 43.24 | 43.67 |
| Os06t0255700-01 | Rice | cytosol | 44.54 | 43.55 |
| TraesCS2D01G189900.1 | Wheat | nucleus | 43.46 | 42.23 |
| KXG24379 | Sorghum | cytosol | 43.57 | 41.55 |
| HORVU2Hr1G034330.2 | Barley | mitochondrion, nucleus, plastid | 43.78 | 41.54 |
| Zm00001d024677_P003 | Maize | cytosol | 42.38 | 41.26 |
| TraesCS5A01G340400.1 | Wheat | nucleus | 42.05 | 40.61 |
| Zm00001d049605_P037 | Maize | cytosol | 42.81 | 40.53 |
| TraesCS5D01G344400.1 | Wheat | nucleus | 41.84 | 40.4 |
| GSMUA_Achr6P04530_001 | Banana | nucleus | 38.7 | 40.36 |
| TraesCS2A01G140400.2 | Wheat | cytosol | 41.19 | 39.85 |
| HORVU5Hr1G085320.1 | Barley | plastid | 41.84 | 39.69 |
| TraesCS2B01G164300.3 | Wheat | nucleus | 40.97 | 39.64 |
| EER92800 | Sorghum | nucleus, plastid | 40.32 | 39.47 |
| TraesCS4D01G279200.1 | Wheat | cytosol | 40.0 | 38.91 |
| TraesCS4B01G280600.1 | Wheat | nucleus | 40.0 | 38.74 |
| TraesCS2A01G182200.1 | Wheat | plastid | 43.46 | 38.69 |
| Bra000888.1-P | Field mustard | cytosol | 19.03 | 38.34 |
| TraesCS4A01G022800.1 | Wheat | mitochondrion, plastid | 40.22 | 37.35 |
| HORVU4Hr1G074230.3 | Barley | nucleus, plastid | 40.11 | 36.16 |
| Os03t0165266-00 | Rice | nucleus | 41.51 | 35.75 |
| Os08t0289400-00 | Rice | cytosol, nucleus | 19.24 | 33.71 |
| TraesCS2D01G143100.1 | Wheat | cytosol | 22.38 | 33.39 |
| PGSC0003DMT400033315 | Potato | nucleus | 5.08 | 32.41 |
| PGSC0003DMT400096321 | Potato | nucleus | 4.0 | 29.6 |
| PGSC0003DMT400085993 | Potato | cytosol | 4.97 | 27.38 |
| PGSC0003DMT400017302 | Potato | nucleus | 17.3 | 25.68 |
| PGSC0003DMT400088837 | Potato | cytosol | 5.08 | 24.87 |
| PGSC0003DMT400085944 | Potato | cytosol | 5.62 | 22.13 |
| PGSC0003DMT400090992 | Potato | mitochondrion | 5.62 | 21.22 |
| PGSC0003DMT400004629 | Potato | nucleus | 20.0 | 20.74 |
| PGSC0003DMT400004673 | Potato | nucleus | 19.03 | 19.21 |
| PGSC0003DMT400004672 | Potato | nucleus | 20.32 | 18.89 |
| PGSC0003DMT400017313 | Potato | nucleus | 20.76 | 15.93 |
| PGSC0003DMT400061540 | Potato | nucleus | 21.62 | 15.55 |
| PGSC0003DMT400038789 | Potato | nucleus | 18.16 | 15.19 |
| PGSC0003DMT400037430 | Potato | nucleus | 11.03 | 15.18 |
| PGSC0003DMT400076122 | Potato | cytosol, nucleus, plastid | 11.14 | 14.19 |
| PGSC0003DMT400082782 | Potato | plastid | 12.76 | 13.29 |
| PGSC0003DMT400026641 | Potato | nucleus | 12.86 | 9.81 |
Protein Annotations
| EntrezGene:102588195 | MapMan:12.4.1.3.3 | MapMan:12.5.1.14.1 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR038718 | UniProt:M1D1X3 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 |
| EnsemblPlantsGene:PGSC0003DMG400030952 | PGSC:PGSC0003DMG400030952 | EnsemblPlants:PGSC0003DMT400079488 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 |
| PANTHER:PTHR10799:SF807 | SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 |
| UniParc:UPI0002957B72 | RefSeq:XP_006362027.1 | SEG:seg | : | : | : |
Description
Chromatin remodeling complex subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400030952]
Coordinates
chr1:+:86346271..86354249
Molecular Weight (calculated)
104886.0 Da
IEP (calculated)
5.369
GRAVY (calculated)
-0.442
Length
925 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLATEGWRN NFANSMAKRS QPYSPRDLFS KGIKKTKFDE SKNQSCPTAA ATSWREECEH GKEKGSSRVA NRSETFAVPD LLKVLDSGKF GSVTRDIEDL
101: IVRRMKLVNS CYASDHSLPN KVLEWERNCE WAFKGNQPSP AVIDLEDGQE TNNISSGPMI SACLPSAELL VIIDSDDEDT QKETISLSQG IHSQINPISP
201: FQGMPLKNAA IDFQIKDFMG RDYGERQISV EAVSLAGEAE LEKDKGVYVG VEDDDEIDDG AEQPDEGLTD IWNEMSFALE FSKDVAAEPS PDEHTVEEED
301: ECDHSFILKD DIGYVCRICG VIKRSIETII EFQYSKAARS TRTYHYEGRS VKDIGPTELL PDGIIPSDDI DMTEICVHPR HRKQMKSHQV EGFNFLVSNL
401: LRDKGGCIMA HAPGSGKTFM IISFLQSFMA NNDRARPLVV LPRGILGTWK KEFLRWQVDE IPLYDFYSVK ADNRSQQLEV LKQWSQERSV LFLGYKQFST
501: IVCDNVGSAT AAACQEILLK CPSILILDEG HTPRNQDTDV LTSLEKVQTR LKVVLSGTLY QNHVKEVFNI LNLVRPKFLK LETSRSIKRT ILSKVASSNR
601: RNLLKKSNDN DFYELVEHTL LKDDNFSRKS AVILGLRKMT EKVLHYYKGD FLEELPGLVD YTVLLKLHPK QKSEVAELKK LGRKFKISSE GSALYVHPQL
701: KSLSRNCSVK DRVDEEKIDT LLENLELREG VKGKFYLNLL QLCETKGEKM LVFSQYLLPL KFLERLTVKT KGYSLGKELF MITGDTDGDV RESSMERFNT
801: SPDARVFFGS IKACGEGISL VGASRIIILD VHLNPSVTRQ AIGRAFRPGQ ERKVYTYRLV ASESPEEEDH ATCFKKESIA KLWFEWSENY AQPDFEMETV
901: DINNCEDLFL ESTRLNEDLV ALYKR
101: IVRRMKLVNS CYASDHSLPN KVLEWERNCE WAFKGNQPSP AVIDLEDGQE TNNISSGPMI SACLPSAELL VIIDSDDEDT QKETISLSQG IHSQINPISP
201: FQGMPLKNAA IDFQIKDFMG RDYGERQISV EAVSLAGEAE LEKDKGVYVG VEDDDEIDDG AEQPDEGLTD IWNEMSFALE FSKDVAAEPS PDEHTVEEED
301: ECDHSFILKD DIGYVCRICG VIKRSIETII EFQYSKAARS TRTYHYEGRS VKDIGPTELL PDGIIPSDDI DMTEICVHPR HRKQMKSHQV EGFNFLVSNL
401: LRDKGGCIMA HAPGSGKTFM IISFLQSFMA NNDRARPLVV LPRGILGTWK KEFLRWQVDE IPLYDFYSVK ADNRSQQLEV LKQWSQERSV LFLGYKQFST
501: IVCDNVGSAT AAACQEILLK CPSILILDEG HTPRNQDTDV LTSLEKVQTR LKVVLSGTLY QNHVKEVFNI LNLVRPKFLK LETSRSIKRT ILSKVASSNR
601: RNLLKKSNDN DFYELVEHTL LKDDNFSRKS AVILGLRKMT EKVLHYYKGD FLEELPGLVD YTVLLKLHPK QKSEVAELKK LGRKFKISSE GSALYVHPQL
701: KSLSRNCSVK DRVDEEKIDT LLENLELREG VKGKFYLNLL QLCETKGEKM LVFSQYLLPL KFLERLTVKT KGYSLGKELF MITGDTDGDV RESSMERFNT
801: SPDARVFFGS IKACGEGISL VGASRIIILD VHLNPSVTRQ AIGRAFRPGQ ERKVYTYRLV ASESPEEEDH ATCFKKESIA KLWFEWSENY AQPDFEMETV
901: DINNCEDLFL ESTRLNEDLV ALYKR
001: MDILQTDQAS SNGYYKNVHK RKQNQVDDGP EAKRVKSSAK VIDYSNPFAV SNMLEALDSG KFGSVSKELE EIADMRMDLV KRSIWLYPSL AYTVFEAEKT
101: MDNQQVVEGV INLDDDDDDD TDVEKKALCV VPSSSEIVLL DSDDEDNERQ RPMYQFQSTL VQHQKNQGDV TPLIPQCSFE EVDLGRGKEM PSAIKAIVEG
201: QTSRGKVLPI ENGVVNEKGV YVGVEEDDSD NESEAADEDL GNIWNEMALS IECSKDVARE TSHKEKADVV EDCEHSFILK DDMGYVCRVC GVIEKSILEI
301: IDVQFTKAKR NTRTYASETR TKRFGESDNE LKFSEEGLMI GGLAAHPTHA AEMKPHQIEG FQFLCSNLVA DDPGGCIMAH APGSGKTFMI ISFMQSFLAK
401: YPQAKPLVVL PKGILPTWKK EFVRWQVEDI PLLDFYSAKA ENRAQQLSIL KQWMEKKSIL FLGYQQFSTI VCDDTTDSLS CQEILLKVPS ILILDEGHTP
501: RNEDTNLLQS LAQVQTPRKV VLSGTLYQNH VKEVFNILNL VRPKFLKLDT SKSAVKRILA YTPCDVRGRL TGSNSDMASM FNETVEHTLQ KSEDFTVKIK
601: VIQDLREMTK KVLHYYKGDF LDELPGLADF TVVLNLSPKQ LNEVKKLRRE KRKFKVSAVG SAIYLHPKLK VFSDKSDDVS DTTMDEMVEK LDLNEGVKAK
701: FFLNLINLCD SAGEKLLVFS QYLIPLKFLE RLAALAKGWK LGKEVFVLTG NTSSEQREWS METFNSSPDA KIFFGSIKAC GEGISLVGAS RILILDVPLN
801: PSVTRQAIGR AFRPGQKKMV HAYRLIAGSS PEEEDHNTCF KKEVISKMWF EWNEYCGYQN FEVETIDVDE AGDTFLESPA LREDIRVLYK R
101: MDNQQVVEGV INLDDDDDDD TDVEKKALCV VPSSSEIVLL DSDDEDNERQ RPMYQFQSTL VQHQKNQGDV TPLIPQCSFE EVDLGRGKEM PSAIKAIVEG
201: QTSRGKVLPI ENGVVNEKGV YVGVEEDDSD NESEAADEDL GNIWNEMALS IECSKDVARE TSHKEKADVV EDCEHSFILK DDMGYVCRVC GVIEKSILEI
301: IDVQFTKAKR NTRTYASETR TKRFGESDNE LKFSEEGLMI GGLAAHPTHA AEMKPHQIEG FQFLCSNLVA DDPGGCIMAH APGSGKTFMI ISFMQSFLAK
401: YPQAKPLVVL PKGILPTWKK EFVRWQVEDI PLLDFYSAKA ENRAQQLSIL KQWMEKKSIL FLGYQQFSTI VCDDTTDSLS CQEILLKVPS ILILDEGHTP
501: RNEDTNLLQS LAQVQTPRKV VLSGTLYQNH VKEVFNILNL VRPKFLKLDT SKSAVKRILA YTPCDVRGRL TGSNSDMASM FNETVEHTLQ KSEDFTVKIK
601: VIQDLREMTK KVLHYYKGDF LDELPGLADF TVVLNLSPKQ LNEVKKLRRE KRKFKVSAVG SAIYLHPKLK VFSDKSDDVS DTTMDEMVEK LDLNEGVKAK
701: FFLNLINLCD SAGEKLLVFS QYLIPLKFLE RLAALAKGWK LGKEVFVLTG NTSSEQREWS METFNSSPDA KIFFGSIKAC GEGISLVGAS RILILDVPLN
801: PSVTRQAIGR AFRPGQKKMV HAYRLIAGSS PEEEDHNTCF KKEVISKMWF EWNEYCGYQN FEVETIDVDE AGDTFLESPA LREDIRVLYK R
Arabidopsis Description
DRD1SNF2 domain-containing protein / helicase domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8B0G3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.