Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g066480.2.1 | Tomato | nucleus | 96.37 | 96.37 |
| KRH32203 | Soybean | cytosol, mitochondrion, nucleus | 19.21 | 84.42 |
| Os01t0102800-01 | Rice | cytosol, nucleus, plastid | 53.67 | 70.99 |
| VIT_07s0005g03670.t01 | Wine grape | nucleus | 69.33 | 68.54 |
| CDX92882 | Canola | nucleus | 62.9 | 67.58 |
| CDY51705 | Canola | nucleus | 64.55 | 67.56 |
| Bra024192.1-P | Field mustard | nucleus | 64.39 | 67.27 |
| KRH19578 | Soybean | nucleus | 67.93 | 67.27 |
| GSMUA_AchrUn_... | Banana | cytosol | 58.7 | 64.32 |
| EES02658 | Sorghum | nucleus | 63.07 | 63.33 |
| AT2G18760.3 | Thale cress | nucleus | 64.96 | 63.24 |
| HORVU3Hr1G014660.2 | Barley | nucleus | 61.91 | 61.56 |
| TraesCS3D01G082200.2 | Wheat | nucleus | 61.5 | 61.1 |
| TraesCS3A01G081900.1 | Wheat | nucleus | 61.58 | 60.53 |
| Zm00001d040203_P003 | Maize | cytosol | 61.67 | 59.51 |
| TraesCS3B01G097000.1 | Wheat | nucleus | 61.83 | 58.73 |
| PGSC0003DMT400033315 | Potato | nucleus | 3.38 | 28.28 |
| PGSC0003DMT400096321 | Potato | nucleus | 2.8 | 27.2 |
| PGSC0003DMT400076122 | Potato | cytosol, nucleus, plastid | 14.59 | 24.38 |
| PGSC0003DMT400082782 | Potato | plastid | 17.64 | 24.1 |
| PGSC0003DMT400017302 | Potato | nucleus | 9.81 | 19.1 |
| PGSC0003DMT400085993 | Potato | cytosol | 2.64 | 19.05 |
| PGSC0003DMT400090992 | Potato | mitochondrion | 3.22 | 15.92 |
| PGSC0003DMT400004629 | Potato | nucleus | 11.46 | 15.58 |
| PGSC0003DMT400088837 | Potato | cytosol | 2.39 | 15.34 |
| PGSC0003DMT400004673 | Potato | nucleus | 10.96 | 14.52 |
| PGSC0003DMT400085944 | Potato | cytosol | 2.72 | 14.04 |
| PGSC0003DMT400004672 | Potato | nucleus | 10.88 | 13.27 |
| PGSC0003DMT400079488 | Potato | nucleus | 9.81 | 12.86 |
| PGSC0003DMT400017313 | Potato | nucleus | 12.12 | 12.2 |
| PGSC0003DMT400038789 | Potato | nucleus | 10.39 | 11.39 |
| PGSC0003DMT400061540 | Potato | nucleus | 11.38 | 10.73 |
| PGSC0003DMT400037430 | Potato | nucleus | 5.94 | 10.71 |
Protein Annotations
| EntrezGene:102595123 | MapMan:12.4.1.4.3 | MapMan:14.6.2.2 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | ncoils:Coil |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR038718 | UniProt:M1ANH6 | InterPro:P-loop_NTPase | PFAM:PF00176 |
| PFAM:PF00271 | EnsemblPlantsGene:PGSC0003DMG400010292 | PGSC:PGSC0003DMG400010292 | EnsemblPlants:PGSC0003DMT400026641 | PFscan:PS51192 | PFscan:PS51194 |
| PANTHER:PTHR10799 | PANTHER:PTHR10799:SF837 | SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N |
| SUPFAM:SSF52540 | UniParc:UPI0002960A1E | RefSeq:XP_006351663.1 | SEG:seg | : | : |
Description
DNA repair and recombination protein RAD26 [Source:PGSC_GENE;Acc:PGSC0003DMG400010292]
Coordinates
chr9:+:49998449..50006194
Molecular Weight (calculated)
135697.0 Da
IEP (calculated)
6.442
GRAVY (calculated)
-0.607
Length
1213 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEEEEEDKIL LSSLGVTSAN PEDIERDVLD QATRHVGESN EATGIAEEEI EERKEVKEEG HDKKLDLFNK LRAVEVEIDA IKDGFGHLER FRRNEEEVPD
0101: TDGCSEAKHT ESEQRTIQAP LDDSNLQHAL ADDRLRSLLE TKAQLREELS IFANETSPDA LIRALVKDQP KSKRKVKEVQ KSSNKKSKRR KTALLVDDDD
0201: FDAVLAAASS GFVETERDAL VRKGMLTPFH KLKGFERRID GAESSGRQSA AADTNSNDND LASTSIAKAV QSISQAAQAR PTTKLLDSAS LPKLDAPAHP
0301: FQRLRKPLKI PQSLEITTEK NGEFTRKKKR PLPSKKWRKL ASREQRQDEG SDVNTSSHED NTEDTEDVES SFVALEGGFK IPETIFNKLF DYQKVGVQWL
0401: WELHCQRAGG IIGDEMGLGK TIQVLSFLGS LHFSDMYKPS IIICPVTLLR QWKREAKTWY PSFHVEILHD SAHDSSSKKK QADSESDYES EDLLDSETEG
0501: KTSSRTSKKW DPVIARVVRS NSGLLITTYE QLRLLGEKLL DIEWGYAVLD EGHRIRNPNA EVTLVCKQLQ TVHRIIMTGA PIQNKLSELW SLFDFVFPGK
0601: LGVLPVFEAE FAVPISVGGY ANATPLQVST AYRCAVVLRD LIMPYLLRRM KADVNANLPK KTEHVLFCSL TKEQRSVYRA FLASSEVEQI FDGSRNSLSG
0701: IDVMRKICNH PDLLEREHSS RDPDYGNPER SGKMKVVAEV LKVWKEQGHR VLLFSQTQQM LDILERFLVT CEYNYRRMDG LTPVKQRMVL IDEFNNTDDI
0801: FIFILTTKVG GLGTNLTGAN RVIIFDPDWN PSTDMQARER AWRIGQKKDV TVYRLITRGA IEEKVYHRQI YKHFLTNKIL KNPQQRRFFK ARDMKDLFTL
0901: NDDGNGGSTE TSSIFSQVSE DVNIVGAPDS QEKPSFQAPA VKDDDSKIGE ADNSDPRGKA GDDNNNGELD EETSILRGLF DAHGIHSAMN HDAIMNAHDE
1001: EKLKLEEKAS QVAQRAAEAL QQSRMLRSRE SVAVPTWTGK SGAAGGPSSA KKKFGSTVNP QLTSKSSEES LNGYDAIRGN AFPAGASAGK ALSSAELLAK
1101: IRGNREKAVS DGLGHQFGMP ASSSNSRAES VSNGHRSASS SSVVQPEVLV RQICTFIQQR GGKTNSASIV DYFRDRVPSK DLPLFKNLLK EIAILEKNPS
1201: GSFWVLKPEY QDQ
0101: TDGCSEAKHT ESEQRTIQAP LDDSNLQHAL ADDRLRSLLE TKAQLREELS IFANETSPDA LIRALVKDQP KSKRKVKEVQ KSSNKKSKRR KTALLVDDDD
0201: FDAVLAAASS GFVETERDAL VRKGMLTPFH KLKGFERRID GAESSGRQSA AADTNSNDND LASTSIAKAV QSISQAAQAR PTTKLLDSAS LPKLDAPAHP
0301: FQRLRKPLKI PQSLEITTEK NGEFTRKKKR PLPSKKWRKL ASREQRQDEG SDVNTSSHED NTEDTEDVES SFVALEGGFK IPETIFNKLF DYQKVGVQWL
0401: WELHCQRAGG IIGDEMGLGK TIQVLSFLGS LHFSDMYKPS IIICPVTLLR QWKREAKTWY PSFHVEILHD SAHDSSSKKK QADSESDYES EDLLDSETEG
0501: KTSSRTSKKW DPVIARVVRS NSGLLITTYE QLRLLGEKLL DIEWGYAVLD EGHRIRNPNA EVTLVCKQLQ TVHRIIMTGA PIQNKLSELW SLFDFVFPGK
0601: LGVLPVFEAE FAVPISVGGY ANATPLQVST AYRCAVVLRD LIMPYLLRRM KADVNANLPK KTEHVLFCSL TKEQRSVYRA FLASSEVEQI FDGSRNSLSG
0701: IDVMRKICNH PDLLEREHSS RDPDYGNPER SGKMKVVAEV LKVWKEQGHR VLLFSQTQQM LDILERFLVT CEYNYRRMDG LTPVKQRMVL IDEFNNTDDI
0801: FIFILTTKVG GLGTNLTGAN RVIIFDPDWN PSTDMQARER AWRIGQKKDV TVYRLITRGA IEEKVYHRQI YKHFLTNKIL KNPQQRRFFK ARDMKDLFTL
0901: NDDGNGGSTE TSSIFSQVSE DVNIVGAPDS QEKPSFQAPA VKDDDSKIGE ADNSDPRGKA GDDNNNGELD EETSILRGLF DAHGIHSAMN HDAIMNAHDE
1001: EKLKLEEKAS QVAQRAAEAL QQSRMLRSRE SVAVPTWTGK SGAAGGPSSA KKKFGSTVNP QLTSKSSEES LNGYDAIRGN AFPAGASAGK ALSSAELLAK
1101: IRGNREKAVS DGLGHQFGMP ASSSNSRAES VSNGHRSASS SSVVQPEVLV RQICTFIQQR GGKTNSASIV DYFRDRVPSK DLPLFKNLLK EIAILEKNPS
1201: GSFWVLKPEY QDQ
0001: MEEDEDQFLL SSLGVTSANP EDLEQKILDE ATKKPDNDEG GSVEEKSTQL EGTNLLSSSQ NELLNKLRAV KFEIDAVAST VENVDEIAAE KGLKKDDESD
0101: LQGLHSGSAL QHALATDRLR SLKKRKIQLE KELTGLHGQS ASSSADHGNL LRDLVKEKPS LKRKLKEIRK PSRRDGKKVK VVSFREDTDF DAVFDGASAG
0201: FVETERDELV RKGILTPFHK LDGFERRLQQ PGPSNSRNLP EGDDENEDSS IIDRAVQSMS LAAKARPTTK LLDAEDLPKL EPPTAPFRRL RKLYKTPNSP
0301: DNEAKKRKAG KKSKKTRPLP EKKWRKRISR EDSSLQGSGD GRRILTTSSC EEEELDDFDD ADDNERSSVQ LEGGLNIPEC IFRKLFDYQR VGVQWLWELH
0401: CQRAGGIIGD EMGLGKTIQV LSFLGSLHFS KMYKPSIIIC PVTLLRQWRR EAQKWYPDFH VEILHDSAQD SGHGKGQGKA SESDYDSESS VDSDHEPKSK
0501: NTKKWDSLLN RVLNSESGLL ITTYEQLRLQ GEKLLNIEWG YAVLDEGHRI RNPNSDITLV CKQLQTVHRI IMTGAPIQNK LTELWSLFDF VFPGKLGVLP
0601: VFEAEFSVPI TVGGYANASP LQVSTAYRCA VVLRDLIMPY LLRRMKADVN AHLTKKTEHV LFCSLTVEQR STYRAFLASS EVEQIFDGNR NSLYGIDVMR
0701: KICNHPDLLE REHSHQNPDY GNPERSGKMK VVAEVLKVWK QQGHRVLLFS QTQQMLDILE SFLVANEYSY RRMDGLTPVK QRMALIDEFN NSEDMFVFVL
0801: TTKVGGLGTN LTGANRVIIF DPDWNPSNDM QARERAWRIG QKKDVTVYRL ITRGTIEEKV YHRQIYKHFL TNKILKNPQQ RRFFKARDMK DLFILKDDGD
0901: SNASTETSNI FSQLAEEINI VGVQSDKKPE SDTQLALHKT AEGSSEQTDV EMTDKTGEAM DEETNILKSL FDAHGIHSAV NHDAIMNAND EEEKMRLEHQ
1001: ASQVAQRAAE ALRQSRMLRS RESISVPTWT GRSGCAGAPS SVRRRFGSTV NSRLTQTGDK PSAIKNGISA GLSSGKAPSS AELLNRIRGS REQAIGVGLE
1101: QPQSSFPSSS GSSSRVGSLQ PEVLIRKICS FVQQKGGSAD TTSIVNHFRD IVSFNDKQLF KNLLKEIATL EKDQNRSFWV LKSEYKD
0101: LQGLHSGSAL QHALATDRLR SLKKRKIQLE KELTGLHGQS ASSSADHGNL LRDLVKEKPS LKRKLKEIRK PSRRDGKKVK VVSFREDTDF DAVFDGASAG
0201: FVETERDELV RKGILTPFHK LDGFERRLQQ PGPSNSRNLP EGDDENEDSS IIDRAVQSMS LAAKARPTTK LLDAEDLPKL EPPTAPFRRL RKLYKTPNSP
0301: DNEAKKRKAG KKSKKTRPLP EKKWRKRISR EDSSLQGSGD GRRILTTSSC EEEELDDFDD ADDNERSSVQ LEGGLNIPEC IFRKLFDYQR VGVQWLWELH
0401: CQRAGGIIGD EMGLGKTIQV LSFLGSLHFS KMYKPSIIIC PVTLLRQWRR EAQKWYPDFH VEILHDSAQD SGHGKGQGKA SESDYDSESS VDSDHEPKSK
0501: NTKKWDSLLN RVLNSESGLL ITTYEQLRLQ GEKLLNIEWG YAVLDEGHRI RNPNSDITLV CKQLQTVHRI IMTGAPIQNK LTELWSLFDF VFPGKLGVLP
0601: VFEAEFSVPI TVGGYANASP LQVSTAYRCA VVLRDLIMPY LLRRMKADVN AHLTKKTEHV LFCSLTVEQR STYRAFLASS EVEQIFDGNR NSLYGIDVMR
0701: KICNHPDLLE REHSHQNPDY GNPERSGKMK VVAEVLKVWK QQGHRVLLFS QTQQMLDILE SFLVANEYSY RRMDGLTPVK QRMALIDEFN NSEDMFVFVL
0801: TTKVGGLGTN LTGANRVIIF DPDWNPSNDM QARERAWRIG QKKDVTVYRL ITRGTIEEKV YHRQIYKHFL TNKILKNPQQ RRFFKARDMK DLFILKDDGD
0901: SNASTETSNI FSQLAEEINI VGVQSDKKPE SDTQLALHKT AEGSSEQTDV EMTDKTGEAM DEETNILKSL FDAHGIHSAV NHDAIMNAND EEEKMRLEHQ
1001: ASQVAQRAAE ALRQSRMLRS RESISVPTWT GRSGCAGAPS SVRRRFGSTV NSRLTQTGDK PSAIKNGISA GLSSGKAPSS AELLNRIRGS REQAIGVGLE
1101: QPQSSFPSSS GSSSRVGSLQ PEVLIRKICS FVQQKGGSAD TTSIVNHFRD IVSFNDKQLF KNLLKEIATL EKDQNRSFWV LKSEYKD
Arabidopsis Description
CHR8chromatin remodeling 8 [Source:TAIR;Acc:AT2G18760]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.