Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH32203 | Soybean | cytosol, mitochondrion, nucleus | 19.06 | 76.45 |
| Os01t0102800-01 | Rice | cytosol, nucleus, plastid | 53.57 | 64.67 |
| EES02658 | Sorghum | nucleus | 65.76 | 60.26 |
| CDX92882 | Canola | nucleus | 61.43 | 60.23 |
| CDY51705 | Canola | nucleus | 62.69 | 59.88 |
| Bra024192.1-P | Field mustard | nucleus | 62.69 | 59.78 |
| TraesCS3D01G082200.2 | Wheat | nucleus | 65.58 | 59.46 |
| VIT_07s0005g03670.t01 | Wine grape | nucleus | 65.85 | 59.41 |
| HORVU3Hr1G014660.2 | Barley | nucleus | 65.22 | 59.18 |
| PGSC0003DMT400026641 | Potato | nucleus | 64.32 | 58.7 |
| TraesCS3A01G081900.1 | Wheat | nucleus | 65.31 | 58.59 |
| Solyc09g066480.2.1 | Tomato | nucleus | 63.96 | 58.37 |
| KRH19578 | Soybean | nucleus | 64.14 | 57.96 |
| Zm00001d040203_P003 | Maize | cytosol | 65.22 | 57.44 |
| AT2G18760.3 | Thale cress | nucleus | 64.59 | 57.38 |
| TraesCS3B01G097000.1 | Wheat | nucleus | 65.49 | 56.77 |
| GSMUA_Achr7P00330_001 | Banana | plastid | 17.71 | 22.55 |
| GSMUA_Achr5P24600_001 | Banana | nucleus | 15.27 | 18.09 |
| GSMUA_Achr4P25070_001 | Banana | golgi | 3.79 | 16.6 |
| GSMUA_Achr7P23270_001 | Banana | nucleus | 20.87 | 16.22 |
| GSMUA_Achr7P06840_001 | Banana | nucleus | 11.83 | 13.89 |
| GSMUA_Achr4P25080_001 | Banana | nucleus | 13.91 | 13.65 |
| GSMUA_Achr4P27500_001 | Banana | mitochondrion | 19.33 | 10.43 |
| GSMUA_Achr8P01860_001 | Banana | nucleus | 9.58 | 9.81 |
| GSMUA_Achr6P04530_001 | Banana | nucleus | 7.41 | 9.24 |
Protein Annotations
| MapMan:12.4.1.4.3 | MapMan:14.6.2.2 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | ncoils:Coil | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | EnsemblPlantsGene:GSMUA_AchrUn_randomG10700_001 | EnsemblPlants:GSMUA_AchrUn_randomP10700_001 | EnsemblPlants:GSMUA_AchrUn_randomT10700_001 |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR038718 | UniProt:M0U829 |
| InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 |
| PANTHER:PTHR10799:SF837 | SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 |
| UniParc:UPI000294EA47 | SEG:seg | : | : | : | : |
Description
retrotransposon protein, putative, Ty1-copia subclass, expressed [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG10700_001]
Coordinates
chrchrUn_random:+:52087997..52096006
Molecular Weight (calculated)
124866.0 Da
IEP (calculated)
8.677
GRAVY (calculated)
-0.558
Length
1107 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEEEDEDKLL LSSLGITSAN PEDIERKILS QAKNDTNYAS EPGESSHDYE PDETGPLPTR VKLYNKLRAL EVEIDAVASS IGSAKCIEVD GSGNSDSTSV
0101: RGDKPVENIG YDVHAPSSNL CLEQALATDR LRDLKKAKAQ LQKEISLFGD YAFANDIEHE KHNVELLDEL VKERPKQKPK HKQKLKSNGH SKRPLKAVAY
0201: DEDADFDTVL DAASAGFMET ERDKLVRRGI LTPFHKLKGF ERRVQERGPP IRQDVPEEDS TENLASTSIA RAAQSISQIA LARPTTKLLD AEALPALEPP
0301: TRPFQRLQGP LKRARSSRKK ELDKNERNIK RTRRPGPEKR WRKDDLTNES LDGISCTKHD SISIAKNLAC YDHSTVAENK DQSSVVFEGG LKMPGAIYSK
0401: LFDYQKVGVQ WLWELHCQRA GGIIGDEMGL GKTIQVISFL GALHFSKMYK TSIVVCPVTL LRQWQREVKK WYPDFKVEIL HDSAHAITKQ KLVKSSEKKW
0501: DYMIDRIVKS ESGLLLTTYE QLRLMGEKLL DIEWGYAVLD EGHRIRNPNA EITLVCKQLQ TVHRIIMTGA PIQNKLGELW SLFDFVFPGK LGVLPVFETE
0601: FAVPITVGGY ANATPLQVST AYRCAVVLRD LIMPYLLRRM KADVNAQLPK KTEHQIFDGI KNSLYGIDVM RKICNHPDLL EREHAAQNPD YGNIERSGKM
0701: KVVSRILNVW KEQGHRVLLF AQTQQMLDII ESFLTASGYS YRRMDGFTAV KQRMALIDEF NNSEEVFVFI LTTKVGGLGT NLTGADRVII YDPDWNPSTD
0801: MQARERAWRI GQKRDVTVYR LITRGTIEEK VYHRQIYKHF LTNKILKNPQ QRRFFKARDM KDLFTLQDDQ GDLTETSNIF SQLSEEIHVG VTDGYQGKQG
0901: SSPSGIREST NQIDGGKDEE INILKSLFDV HGIHSAMNHD AIMNANEDFK MKMEEQASQV AQRAAQALRE SRMLRSRESF AVPTWTGRAG AAGAPSSTRN
1001: RFGSTLNTQL LGPGKPSEGS ASRPPESSHS TKPPSKLVIA QPEVLIRQLC TFIQQRGGST DSASITQHFK DKIQSKDLPL FKNLLKEIAT LEKDASGSRW
1101: VLKSEYQ
0101: RGDKPVENIG YDVHAPSSNL CLEQALATDR LRDLKKAKAQ LQKEISLFGD YAFANDIEHE KHNVELLDEL VKERPKQKPK HKQKLKSNGH SKRPLKAVAY
0201: DEDADFDTVL DAASAGFMET ERDKLVRRGI LTPFHKLKGF ERRVQERGPP IRQDVPEEDS TENLASTSIA RAAQSISQIA LARPTTKLLD AEALPALEPP
0301: TRPFQRLQGP LKRARSSRKK ELDKNERNIK RTRRPGPEKR WRKDDLTNES LDGISCTKHD SISIAKNLAC YDHSTVAENK DQSSVVFEGG LKMPGAIYSK
0401: LFDYQKVGVQ WLWELHCQRA GGIIGDEMGL GKTIQVISFL GALHFSKMYK TSIVVCPVTL LRQWQREVKK WYPDFKVEIL HDSAHAITKQ KLVKSSEKKW
0501: DYMIDRIVKS ESGLLLTTYE QLRLMGEKLL DIEWGYAVLD EGHRIRNPNA EITLVCKQLQ TVHRIIMTGA PIQNKLGELW SLFDFVFPGK LGVLPVFETE
0601: FAVPITVGGY ANATPLQVST AYRCAVVLRD LIMPYLLRRM KADVNAQLPK KTEHQIFDGI KNSLYGIDVM RKICNHPDLL EREHAAQNPD YGNIERSGKM
0701: KVVSRILNVW KEQGHRVLLF AQTQQMLDII ESFLTASGYS YRRMDGFTAV KQRMALIDEF NNSEEVFVFI LTTKVGGLGT NLTGADRVII YDPDWNPSTD
0801: MQARERAWRI GQKRDVTVYR LITRGTIEEK VYHRQIYKHF LTNKILKNPQ QRRFFKARDM KDLFTLQDDQ GDLTETSNIF SQLSEEIHVG VTDGYQGKQG
0901: SSPSGIREST NQIDGGKDEE INILKSLFDV HGIHSAMNHD AIMNANEDFK MKMEEQASQV AQRAAQALRE SRMLRSRESF AVPTWTGRAG AAGAPSSTRN
1001: RFGSTLNTQL LGPGKPSEGS ASRPPESSHS TKPPSKLVIA QPEVLIRQLC TFIQQRGGST DSASITQHFK DKIQSKDLPL FKNLLKEIAT LEKDASGSRW
1101: VLKSEYQ
0001: MEEDEDQFLL SSLGVTSANP EDLEQKILDE ATKKPDNDEG GSVEEKSTQL EGTNLLSSSQ NELLNKLRAV KFEIDAVAST VENVDEIAAE KGLKKDDESD
0101: LQGLHSGSAL QHALATDRLR SLKKRKIQLE KELTGLHGQS ASSSADHGNL LRDLVKEKPS LKRKLKEIRK PSRRDGKKVK VVSFREDTDF DAVFDGASAG
0201: FVETERDELV RKGILTPFHK LDGFERRLQQ PGPSNSRNLP EGDDENEDSS IIDRAVQSMS LAAKARPTTK LLDAEDLPKL EPPTAPFRRL RKLYKTPNSP
0301: DNEAKKRKAG KKSKKTRPLP EKKWRKRISR EDSSLQGSGD GRRILTTSSC EEEELDDFDD ADDNERSSVQ LEGGLNIPEC IFRKLFDYQR VGVQWLWELH
0401: CQRAGGIIGD EMGLGKTIQV LSFLGSLHFS KMYKPSIIIC PVTLLRQWRR EAQKWYPDFH VEILHDSAQD SGHGKGQGKA SESDYDSESS VDSDHEPKSK
0501: NTKKWDSLLN RVLNSESGLL ITTYEQLRLQ GEKLLNIEWG YAVLDEGHRI RNPNSDITLV CKQLQTVHRI IMTGAPIQNK LTELWSLFDF VFPGKLGVLP
0601: VFEAEFSVPI TVGGYANASP LQVSTAYRCA VVLRDLIMPY LLRRMKADVN AHLTKKTEHV LFCSLTVEQR STYRAFLASS EVEQIFDGNR NSLYGIDVMR
0701: KICNHPDLLE REHSHQNPDY GNPERSGKMK VVAEVLKVWK QQGHRVLLFS QTQQMLDILE SFLVANEYSY RRMDGLTPVK QRMALIDEFN NSEDMFVFVL
0801: TTKVGGLGTN LTGANRVIIF DPDWNPSNDM QARERAWRIG QKKDVTVYRL ITRGTIEEKV YHRQIYKHFL TNKILKNPQQ RRFFKARDMK DLFILKDDGD
0901: SNASTETSNI FSQLAEEINI VGVQSDKKPE SDTQLALHKT AEGSSEQTDV EMTDKTGEAM DEETNILKSL FDAHGIHSAV NHDAIMNAND EEEKMRLEHQ
1001: ASQVAQRAAE ALRQSRMLRS RESISVPTWT GRSGCAGAPS SVRRRFGSTV NSRLTQTGDK PSAIKNGISA GLSSGKAPSS AELLNRIRGS REQAIGVGLE
1101: QPQSSFPSSS GSSSRVGSLQ PEVLIRKICS FVQQKGGSAD TTSIVNHFRD IVSFNDKQLF KNLLKEIATL EKDQNRSFWV LKSEYKD
0101: LQGLHSGSAL QHALATDRLR SLKKRKIQLE KELTGLHGQS ASSSADHGNL LRDLVKEKPS LKRKLKEIRK PSRRDGKKVK VVSFREDTDF DAVFDGASAG
0201: FVETERDELV RKGILTPFHK LDGFERRLQQ PGPSNSRNLP EGDDENEDSS IIDRAVQSMS LAAKARPTTK LLDAEDLPKL EPPTAPFRRL RKLYKTPNSP
0301: DNEAKKRKAG KKSKKTRPLP EKKWRKRISR EDSSLQGSGD GRRILTTSSC EEEELDDFDD ADDNERSSVQ LEGGLNIPEC IFRKLFDYQR VGVQWLWELH
0401: CQRAGGIIGD EMGLGKTIQV LSFLGSLHFS KMYKPSIIIC PVTLLRQWRR EAQKWYPDFH VEILHDSAQD SGHGKGQGKA SESDYDSESS VDSDHEPKSK
0501: NTKKWDSLLN RVLNSESGLL ITTYEQLRLQ GEKLLNIEWG YAVLDEGHRI RNPNSDITLV CKQLQTVHRI IMTGAPIQNK LTELWSLFDF VFPGKLGVLP
0601: VFEAEFSVPI TVGGYANASP LQVSTAYRCA VVLRDLIMPY LLRRMKADVN AHLTKKTEHV LFCSLTVEQR STYRAFLASS EVEQIFDGNR NSLYGIDVMR
0701: KICNHPDLLE REHSHQNPDY GNPERSGKMK VVAEVLKVWK QQGHRVLLFS QTQQMLDILE SFLVANEYSY RRMDGLTPVK QRMALIDEFN NSEDMFVFVL
0801: TTKVGGLGTN LTGANRVIIF DPDWNPSNDM QARERAWRIG QKKDVTVYRL ITRGTIEEKV YHRQIYKHFL TNKILKNPQQ RRFFKARDMK DLFILKDDGD
0901: SNASTETSNI FSQLAEEINI VGVQSDKKPE SDTQLALHKT AEGSSEQTDV EMTDKTGEAM DEETNILKSL FDAHGIHSAV NHDAIMNAND EEEKMRLEHQ
1001: ASQVAQRAAE ALRQSRMLRS RESISVPTWT GRSGCAGAPS SVRRRFGSTV NSRLTQTGDK PSAIKNGISA GLSSGKAPSS AELLNRIRGS REQAIGVGLE
1101: QPQSSFPSSS GSSSRVGSLQ PEVLIRKICS FVQQKGGSAD TTSIVNHFRD IVSFNDKQLF KNLLKEIATL EKDQNRSFWV LKSEYKD
Arabidopsis Description
CHR8chromatin remodeling 8 [Source:TAIR;Acc:AT2G18760]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.