Factsheet for GSMUA_Achr5P24600_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G19210.1	GSMUA_Achr10P...	AT5G20850.1	17227544
AT3G19210.1	GSMUA_Achr10P...	AT5G20850.1	18430956

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G071540.2	Barley	nucleus	20.02	68.5
HORVU7Hr1G119270.3	Barley	nucleus	20.45	68.21
KRH77966	Soybean	nucleus	63.92	66.33
EES07568	Sorghum	nucleus	68.42	65.88
AT3G19210.1	Thale cress	nucleus	63.81	65.49
TraesCS6A01G321200.1	Wheat	nucleus	68.2	65.47
Os02t0762800-00	Rice	nucleus	68.63	65.41
HORVU6Hr1G078680.2	Barley	nucleus	68.2	65.2
Zm00001d018151_P003	Maize	nucleus	67.45	65.08
CDX92308	Canola	nucleus	62.85	64.43
Bra022395.1-P	Field mustard	nucleus	62.95	64.4
CDX99258	Canola	nucleus	62.53	64.39
Solyc04g056410.2.1	Tomato	nucleus	40.04	63.71
TraesCS6B01G351900.1	Wheat	nucleus	68.2	63.51
Solyc04g056400.2.1	Tomato	cytosol, nucleus, plastid	23.98	60.7
VIT_03s0063g00580.t01	Wine grape	nucleus	62.95	60.12
TraesCS6D01G300900.1	Wheat	cytosol	67.77	59.77
GSMUA_Achr7P00330_001	Banana	plastid	20.13	21.63
GSMUA_Achr4P25070_001	Banana	golgi	4.18	15.41
GSMUA_Achr4P25080_001	Banana	nucleus	18.52	15.34
GSMUA_AchrUn_...	Banana	cytosol	18.09	15.27
GSMUA_Achr7P06840_001	Banana	nucleus	12.74	12.62
GSMUA_Achr7P23270_001	Banana	nucleus	19.16	12.57
GSMUA_Achr8P01860_001	Banana	nucleus	11.99	10.37
GSMUA_Achr6P04530_001	Banana	nucleus	9.31	9.81
GSMUA_Achr4P27500_001	Banana	mitochondrion	20.34	9.26

Protein Annotations

Gene3D:1.20.120.850	MapMan:12.4.1.3.1	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0000724
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009987	GO:GO:0010332	GO:GO:0045003
GO:GO:0051701	GO:GO:0071248	GO:GO:0071480	EnsemblPlantsGene:GSMUA_Achr5G24600_001	EnsemblPlants:GSMUA_Achr5P24600_001	EnsemblPlants:GSMUA_Achr5T24600_001
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR038718	UniProt:M0T1D5
InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799
PANTHER:PTHR10799:SF889	SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540
UniParc:UPI000294BC31	SEG:seg	:	:	:	:

Description

SNF2 family N-terminal domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G24600_001]

Coordinates

chr5:+:25907768..25921518

Molecular Weight (calculated)

104660.0 Da

IEP (calculated)

5.940

GRAVY (calculated)

-0.466

Length

934 amino acids

Sequence
(BLAST)

001: MTSKQEGEDE ELGSSFDSDQ GYDEESEYGG QEEEEVEEED EESGTEEACS ADQDRKSQNV AALVRGNILV RRQPLIPRIL CVSDGAAVAR KPFKPPCPYR
101: YKDENDELTR RLWVRKRFVP WCSSRTPLVT IGNILHSPSF TNDDPEERNQ PLPPGIEPLV LWLPEGADEA NDCVSRIEVD PLLVRYLRPH QREGVQFMFE
201: CVSGLSGSDG ISGCILADDM GLGKTLQSIT LLYTLLRQGF DGQPMVKRAM IVTPTSLVSN WEAEINKWIG GKVQLLSLCE STRADVLSGI ENFLRPCSPF
301: QVLIISYETF RMHSSKFEKG GSCDLLICDE AHRLKNDQTL TNRALASLPC KRRILLSGTP MQNDLEEFFA MVDFTNPGVL GDATYFRKYY EIPVVSGREP
401: TATLEERKLG IERSAELSVK VNQFILRRTN TLLSNHLPPK IIEVVCCKLT PLQLELYNHF VQSKNVKHVI AEEMKQSKIL AYITALKKLC NHPKLIYDSI
501: KSGSSGTSGF DDCIRFFPTE LFSGRSGSWT GGGGIWVELS GKMHVLARLL GQLRKNTDDR VVLVSNYTQT LDLFAQLCRE RRYPFLRLDG TTSIGKRQKL
601: VNRFNDPSKD EFLFLLSSKA GGCGLNLIGG NRLVLFDPDW NPANDKQAAA RVWRDGQKKR VYIYRFLTTG TIEEKVYQRQ MSKEGLQKVI QKEQANSQMP
701: QGSHLSKEDL RDLFTFHENV RSEIHENMNC ARCKEDGLMA VNNIVNEIED DDSGDSCDGK QKLSGLVNDI GGFAEIAGCL QNLTSSQRQL GTPSEEDLGS
801: WGHHSNPATV PDLILQSAAG DEVTFVFTNQ VDGKLVPVES GVRSTQHLDN QKYEKKDGKS MFLPMQINQQ STKSNGNACL KSFSGLDTPL SKEPKSMKTL
901: RKLHLLKKSN VSFGDQSSLK RMPLASCLSD DDFT

Best Arabidopsis Sequence Match ( AT3G19210.1 )
(BLAST)

001: MEEEDEEILS SSDCDDSSDS YKDDSQDSEG ENDNPECEDL AVVSLSSDAD RKSKNVKDLL RGNLVVQRQP LLPRVLSVSD GAAVCRKPFK PPCSHGYDST
101: GQLSRRLSAR KRFVPWGSST PVVVALPTKL EASTNIERDE EEEVVCLPPD IEPLVLWQSE EDGMSNVTTI MVHSVLVKFL RPHQREGVQF MFDCVSGLHG
201: SANINGCILA DDMGLGKTLQ SITLLYTLLC QGFDGTPMVK KAIIVTPTSL VSNWEAEIKK WVGDRIQLIA LCESTRDDVL SGIDSFTRPR SALQVLIISY
301: ETFRMHSSKF CQSESCDLLI CDEAHRLKND QTLTNRALAS LTCKRRVLLS GTPMQNDLEE FFAMVNFTNP GSLGDAAHFR HYYEAPIICG REPTATEEEK
401: NLAADRSAEL SSKVNQFILR RTNALLSNHL PPKIIEVVCC KMTTLQSTLY NHFISSKNLK RALADNAKQT KVLAYITALK KLCNHPKLIY DTIKSGNPGT
501: VGFENCLEFF PAEMFSGRSG AWTGGDGAWV ELSGKMHVLS RLLANLRRKT DDRIVLVSNY TQTLDLFAQL CRERRYPFLR LDGSTTISKR QKLVNRLNDP
601: TKDEFAFLLS SKAGGCGLNL IGANRLVLFD PDWNPANDKQ AAARVWRDGQ KKRVYVYRFL STGTIEEKVY QRQMSKEGLQ KVIQHEQTDN STRQGNLLST
701: EDLRDLFSFH GDVRSEIHEK MSCSRCQNDA SGTENIEEGN ENNVDDNACQ IDQEDIGGFA KDAGCFNLLK NSERQVGTPL EEDLGSWGHH FTSKSVPDAI
801: LQASAGDEVT FVFTNQVDGK LVPIESNVSP KTVESEEHNR NQPVNKRAFN KPQQRPREPL QPLSLNETTK RVKLSTYKRL HGNSNIDDAQ IKMSLQRPNL
901: VSVNHDDDFV

Arabidopsis Description

CHR25Protein CHROMATIN REMODELING 25 [Source:UniProtKB/Swiss-Prot;Acc:Q0PCS3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.