Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG37026 | Sorghum | nucleus | 46.39 | 40.73 |
| TraesCS2B01G105400.1 | Wheat | nucleus | 45.37 | 39.08 |
| TraesCS2D01G087600.1 | Wheat | nucleus | 45.09 | 38.77 |
| TraesCS2A01G089500.1 | Wheat | plastid | 45.19 | 38.7 |
| HORVU2Hr1G014660.2 | Barley | nucleus | 44.81 | 38.29 |
| Zm00001d022576_P001 | Maize | golgi, nucleus, plasma membrane | 45.46 | 36.81 |
| VIT_13s0067g01950.t01 | Wine grape | nucleus | 40.19 | 34.2 |
| KRG97679 | Soybean | nucleus | 38.52 | 33.68 |
| KRG88505 | Soybean | endoplasmic reticulum, nucleus | 37.31 | 33.44 |
| PGSC0003DMT400061540 | Potato | nucleus | 39.81 | 33.44 |
| Solyc06g050510.2.1 | Tomato | nucleus | 39.72 | 33.33 |
| AT3G42670.4 | Thale cress | nucleus | 37.96 | 32.59 |
| Bra021058.1-P | Field mustard | nucleus | 38.33 | 32.57 |
| Bra002302.1-P | Field mustard | cytosol | 37.31 | 32.34 |
| KRH73247 | Soybean | nucleus | 39.17 | 32.29 |
| AT5G20420.1 | Thale cress | cytosol | 37.69 | 32.28 |
| CDX92463 | Canola | nucleus | 37.31 | 31.86 |
| CDY56857 | Canola | cytosol | 36.94 | 31.54 |
| GSMUA_Achr7P06840_001 | Banana | nucleus | 19.81 | 22.69 |
| GSMUA_Achr6P04530_001 | Banana | nucleus | 14.26 | 17.36 |
| GSMUA_Achr7P00330_001 | Banana | plastid | 11.02 | 13.69 |
| Os04t0692750-01 | Rice | cytosol | 11.85 | 12.97 |
| GSMUA_Achr5P24600_001 | Banana | nucleus | 10.37 | 11.99 |
| GSMUA_Achr4P25080_001 | Banana | nucleus | 11.57 | 11.08 |
| GSMUA_AchrUn_... | Banana | cytosol | 9.81 | 9.58 |
| GSMUA_Achr4P25070_001 | Banana | golgi | 2.04 | 8.7 |
| GSMUA_Achr7P23270_001 | Banana | nucleus | 10.74 | 8.15 |
| GSMUA_Achr4P27500_001 | Banana | mitochondrion | 13.06 | 6.87 |
| Os04t0692700-01 | Rice | nucleus | 0.0 | 0.0 |
Protein Annotations
| MapMan:12.5.1.10 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005524 | EnsemblPlantsGene:GSMUA_Achr8G01860_001 | EnsemblPlants:GSMUA_Achr8P01860_001 | EnsemblPlants:GSMUA_Achr8T01860_001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR038718 | UniProt:M0TLT8 | InterPro:P-loop_NTPase | PFAM:PF00176 |
| PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF792 | SMART:SM00487 |
| SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 | UniParc:UPI000295C136 | SEG:seg |
Description
Putative helicase conserved C-terminal domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G01860_001]
Coordinates
chr8:+:1397674..1401791
Molecular Weight (calculated)
123524.0 Da
IEP (calculated)
7.193
GRAVY (calculated)
-0.347
Length
1080 amino acids
Sequence
(BLAST)
(BLAST)
0001: MIVDKVDGDC LRMRSRKASL SDCIHFLKPG VEVCVLSRHP VSANFGQEVQ KPLLSWHDAI IISIKKVRHV DHCSFLFSVM ICTNKSSVSE KKGRNDRWAE
0101: VVPIDNISIL QKLQSEPCED GYYQWNSTVD CVSYGKSKLL NEAFSSEVAW LLVLSTLKGM SFDLKLVQNK LVSFITKSYQ ESASLSNLQS DGATNITNSS
0201: SHETIKIMRF QWSNEILKPK IQTVVMAPSE EITPEKATEA NHHVVNVESD SEVEFLYEHT SLRHSKRLKV VPDRFSSYSS PDFGRCTKKI VIEGINGTDE
0301: TCIPFKSGVL LEGDLDYVEL QQQKLLEGKS ALLHSRHSSN LHEMTLIGLH KRGKDGSTDP SSNEIDHIPL HVYKRRFKRK KLANPNECKE VIEKCIGNIR
0401: NQIERQFEPI VPQAAYQPTA SPKEEEEEDF NWTPLADTPA EQKEHEDLWK EMEHSLTTLA LLEQKQTIAV MNWQAVNFES QTEGTFNSVE YGEEKCQHDY
0501: ELHDEIGLRC RLCSFVCTEI KHVSPPFVDG WNSFKEKFVD QTLWIERYDL ELNALGDAIS SREISLSERC ENVWSLIDDL QSKLHLHQKK AFEFIWKNTT
0601: GSLKPEEMNH LSENTGGCVI SHSPGSGKTL LIIAFIVSYL RLFPKSRPLV LAPKSAIHTW SKEFQKWGIS VPVYLIQREN KFRTSSFRTI LQKSPGILIL
0701: DEGHNPRSTK SKLRKLLMEV KTENRVLLSG TVFQNNFEEY FNTLALARPR FTKIRKERLA RKLFMEKVGQ NIESNKEHDR KQGFGLLNKI TGGFVDVYGS
0801: EILDMLPGLE IYTIMLASTE LQHEMLMKLQ NSVPHKRYPL ELEILVTVCS IHPWLVKSVG CVTSFFSADE LETISKCREN FRLGSKVNFV IDLVHKSDIR
0901: GEKVLVFCHN ISPLNFLVDL FKLIFGWNKG EEVLILQGDQ ELPLRAKIMD KFNGDVHGKC KVLLASTTAC AEGISLTAAS RLVMLDSEWN HSKTRQAIAR
1001: AFRPGQEKVV YVYLLLASGT WEEGKYKSNA RKAWMSKMIF LGRYIEFSSS RQVEHIDDEL LRELVEEDEI KMLQMIMRPS
0101: VVPIDNISIL QKLQSEPCED GYYQWNSTVD CVSYGKSKLL NEAFSSEVAW LLVLSTLKGM SFDLKLVQNK LVSFITKSYQ ESASLSNLQS DGATNITNSS
0201: SHETIKIMRF QWSNEILKPK IQTVVMAPSE EITPEKATEA NHHVVNVESD SEVEFLYEHT SLRHSKRLKV VPDRFSSYSS PDFGRCTKKI VIEGINGTDE
0301: TCIPFKSGVL LEGDLDYVEL QQQKLLEGKS ALLHSRHSSN LHEMTLIGLH KRGKDGSTDP SSNEIDHIPL HVYKRRFKRK KLANPNECKE VIEKCIGNIR
0401: NQIERQFEPI VPQAAYQPTA SPKEEEEEDF NWTPLADTPA EQKEHEDLWK EMEHSLTTLA LLEQKQTIAV MNWQAVNFES QTEGTFNSVE YGEEKCQHDY
0501: ELHDEIGLRC RLCSFVCTEI KHVSPPFVDG WNSFKEKFVD QTLWIERYDL ELNALGDAIS SREISLSERC ENVWSLIDDL QSKLHLHQKK AFEFIWKNTT
0601: GSLKPEEMNH LSENTGGCVI SHSPGSGKTL LIIAFIVSYL RLFPKSRPLV LAPKSAIHTW SKEFQKWGIS VPVYLIQREN KFRTSSFRTI LQKSPGILIL
0701: DEGHNPRSTK SKLRKLLMEV KTENRVLLSG TVFQNNFEEY FNTLALARPR FTKIRKERLA RKLFMEKVGQ NIESNKEHDR KQGFGLLNKI TGGFVDVYGS
0801: EILDMLPGLE IYTIMLASTE LQHEMLMKLQ NSVPHKRYPL ELEILVTVCS IHPWLVKSVG CVTSFFSADE LETISKCREN FRLGSKVNFV IDLVHKSDIR
0901: GEKVLVFCHN ISPLNFLVDL FKLIFGWNKG EEVLILQGDQ ELPLRAKIMD KFNGDVHGKC KVLLASTTAC AEGISLTAAS RLVMLDSEWN HSKTRQAIAR
1001: AFRPGQEKVV YVYLLLASGT WEEGKYKSNA RKAWMSKMIF LGRYIEFSSS RQVEHIDDEL LRELVEEDEI KMLQMIMRPS
0001: MKRKHYFEFN HPFNPCPFEV FCWGTWKAVE YLRIENGTMT MRLLENGQVL DDIKPFQRLR IRSRKATLID CTSFLRPGID VCVLYQRDEE TPEPVWVDAR
0101: VLSIERKPHE SECLCTFHVS VYIDQGCIGL EKHRMNKVPV LVGLNEIAIL QKFCKEQSLD RYYRWRYSED CSSLVKTRLN LGKFLPDLTW LLVTSVLKNI
0201: VFQIRTVHEK MVYQIVTDED CEGSSSSLSA MNITVEDGVV MSKVVLFNPA EDTCQDSDVK EEIEEEVMEL RRSKRRSGRP ERYGDSEIQP DSKDGWVRMM
0301: PYRYNIWNVS SDDDDEEEDC EDDKDTDDDL YLPLSHLLRK KGSKKGFSKD KQREIVLVDK TERKKRKKTE GFSRSCELSV IPFTPVFEPI PLEQFGLNAN
0401: SLCGGVSGNL MDEIDKYRSK AAKYGKKKKK KIEMEEMESD LGWNGPIGNV VHKRNGPHSR IRSVSRETGV SEEPQIYKKR TLSAGAYNKL IDSYMSRIDS
0501: TIAAKDKATN VVEQWQGLKN PASFSIEAEE RLSEEEEDDG ETSENEILWR EMELCLASSY ILDDHEVRVD NEAFHKATCD CEHDYELNEE IGMCCRLCGH
0601: VGTEIKHVSA PFARHKKWTT ETKQINEDDI NTTIVNQDGV ESHTFTIPVA SSDMPSAEES DNVWSLIPQL KRKLHLHQKK AFEFLWKNLA GSVVPAMMDP
0701: SSDKIGGCVV SHTPGAGKTF LIIAFLASYL KIFPGKRPLV LAPKTTLYTW YKEFIKWEIP VPVHLLHGRR TYCMSKEKTI QFEGIPKPSQ DVMHVLDCLD
0801: KIQKWHAQPS VLVMGYTSFL TLMREDSKFA HRKYMAKVLR ESPGLLVLDE GHNPRSTKSR LRKALMKVDT DLRILLSGTL FQNNFCEYFN TLCLARPKFV
0901: HEVLVELDKK FQTNQAEQKA PHLLENRARK FFLDIIAKKI DTKVGDERLQ GLNMLRNMTS GFIDNYEGSG SGSGDVLPGL QIYTLLMNST DVQHKSLTKL
1001: QNIMSTYHGY PLELELLITL AAIHPWLVKT TTCCAKFFNP QELLEIEKLK HDAKKGSKVM FVLNLVFRVV KREKILIFCH NIAPIRLFLE LFENVFRWKR
1101: GRELLTLTGD LELFERGRVI DKFEEPGGQS RVLLASITAC AEGISLTAAS RVIMLDSEWN PSKTKQAIAR AFRPGQQKVV YVYQLLSRGT LEEDKYRRTT
1201: WKEWVSSMIF SEEFVEDPSQ WQAEKIEDDV LREIVEEDKV KSFHMIMKNE KASTGG
0101: VLSIERKPHE SECLCTFHVS VYIDQGCIGL EKHRMNKVPV LVGLNEIAIL QKFCKEQSLD RYYRWRYSED CSSLVKTRLN LGKFLPDLTW LLVTSVLKNI
0201: VFQIRTVHEK MVYQIVTDED CEGSSSSLSA MNITVEDGVV MSKVVLFNPA EDTCQDSDVK EEIEEEVMEL RRSKRRSGRP ERYGDSEIQP DSKDGWVRMM
0301: PYRYNIWNVS SDDDDEEEDC EDDKDTDDDL YLPLSHLLRK KGSKKGFSKD KQREIVLVDK TERKKRKKTE GFSRSCELSV IPFTPVFEPI PLEQFGLNAN
0401: SLCGGVSGNL MDEIDKYRSK AAKYGKKKKK KIEMEEMESD LGWNGPIGNV VHKRNGPHSR IRSVSRETGV SEEPQIYKKR TLSAGAYNKL IDSYMSRIDS
0501: TIAAKDKATN VVEQWQGLKN PASFSIEAEE RLSEEEEDDG ETSENEILWR EMELCLASSY ILDDHEVRVD NEAFHKATCD CEHDYELNEE IGMCCRLCGH
0601: VGTEIKHVSA PFARHKKWTT ETKQINEDDI NTTIVNQDGV ESHTFTIPVA SSDMPSAEES DNVWSLIPQL KRKLHLHQKK AFEFLWKNLA GSVVPAMMDP
0701: SSDKIGGCVV SHTPGAGKTF LIIAFLASYL KIFPGKRPLV LAPKTTLYTW YKEFIKWEIP VPVHLLHGRR TYCMSKEKTI QFEGIPKPSQ DVMHVLDCLD
0801: KIQKWHAQPS VLVMGYTSFL TLMREDSKFA HRKYMAKVLR ESPGLLVLDE GHNPRSTKSR LRKALMKVDT DLRILLSGTL FQNNFCEYFN TLCLARPKFV
0901: HEVLVELDKK FQTNQAEQKA PHLLENRARK FFLDIIAKKI DTKVGDERLQ GLNMLRNMTS GFIDNYEGSG SGSGDVLPGL QIYTLLMNST DVQHKSLTKL
1001: QNIMSTYHGY PLELELLITL AAIHPWLVKT TTCCAKFFNP QELLEIEKLK HDAKKGSKVM FVLNLVFRVV KREKILIFCH NIAPIRLFLE LFENVFRWKR
1101: GRELLTLTGD LELFERGRVI DKFEEPGGQS RVLLASITAC AEGISLTAAS RVIMLDSEWN PSKTKQAIAR AFRPGQQKVV YVYQLLSRGT LEEDKYRRTT
1201: WKEWVSSMIF SEEFVEDPSQ WQAEKIEDDV LREIVEEDKV KSFHMIMKNE KASTGG
Arabidopsis Description
CHR38Chromatin remodeling 38 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTS2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.