Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92463 | Canola | nucleus | 98.48 | 97.0 |
| AT5G20420.1 | Thale cress | cytosol | 81.86 | 80.89 |
| Bra021058.1-P | Field mustard | nucleus | 71.51 | 70.1 |
| KRG88505 | Soybean | endoplasmic reticulum, nucleus | 49.84 | 51.54 |
| KRH73247 | Soybean | nucleus | 52.09 | 49.54 |
| VIT_13s0067g01950.t01 | Wine grape | nucleus | 49.92 | 49.02 |
| KRG97679 | Soybean | nucleus | 47.11 | 47.53 |
| PGSC0003DMT400061540 | Potato | nucleus | 46.63 | 45.18 |
| Solyc06g050510.2.1 | Tomato | nucleus | 46.63 | 45.14 |
| GSMUA_Achr8P01860_001 | Banana | nucleus | 32.34 | 37.31 |
| KXG37026 | Sorghum | nucleus | 32.02 | 32.44 |
| HORVU2Hr1G014660.2 | Barley | nucleus | 31.78 | 31.33 |
| TraesCS2B01G105400.1 | Wheat | nucleus | 31.46 | 31.26 |
| TraesCS2A01G089500.1 | Wheat | plastid | 31.46 | 31.09 |
| TraesCS2D01G087600.1 | Wheat | nucleus | 31.3 | 31.05 |
| Zm00001d022576_P001 | Maize | golgi, nucleus, plasma membrane | 32.02 | 29.91 |
| Bra021841.1-P | Field mustard | cytosol | 15.65 | 25.52 |
| Bra015035.1-P | Field mustard | nucleus | 19.5 | 23.32 |
| Bra001944.1-P | Field mustard | nucleus | 19.1 | 22.33 |
| Bra000888.1-P | Field mustard | cytosol | 7.22 | 19.61 |
| Bra015430.1-P | Field mustard | nucleus | 20.22 | 15.92 |
| Bra022395.1-P | Field mustard | nucleus | 10.27 | 14.02 |
| Os04t0692750-01 | Rice | cytosol | 10.91 | 13.78 |
| Bra024192.1-P | Field mustard | nucleus | 11.24 | 12.06 |
| Bra024250.1-P | Field mustard | cytosol | 10.75 | 11.62 |
| Bra032544.1-P | Field mustard | nucleus | 9.71 | 7.36 |
| Bra007061.1-P | Field mustard | mitochondrion | 11.8 | 7.18 |
| Bra018612.1-P | Field mustard | nucleus | 12.36 | 5.94 |
| Bra031634.1-P | Field mustard | nucleus | 1.52 | 3.27 |
| Os04t0692700-01 | Rice | nucleus | 0.0 | 0.0 |
Protein Annotations
| MapMan:12.5.1.10 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | EnsemblPlantsGene:Bra002302 | EnsemblPlants:Bra002302.1 | EnsemblPlants:Bra002302.1-P |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR038718 | UniProt:M4CDM1 | InterPro:P-loop_NTPase | PFAM:PF00176 |
| PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF792 | SMART:SM00487 |
| SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 | UniParc:UPI0002544C1A | SEG:seg |
Description
AT5G20420 (E=0.0) CHR42 | CHR42 (chromatin remodeling 42); ATP binding / DNA binding / helicase/ nucleic acid binding
Coordinates
chrA10:+:10409223..10413620
Molecular Weight (calculated)
142999.0 Da
IEP (calculated)
8.175
GRAVY (calculated)
-0.428
Length
1246 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTVPLLENGY ILEDIRPFQR LRLRSRKATL NDCTCFLRPG IDVCVLYPLH EDDLEPVWID ARIVSIERKP HESECTCEIY VRIYIDQGCI GMEGQRINRD
0101: SVIIGLNQIS ILQKFYKEQS SDQFYRWKFS EDCTTLMKTR LSLGNFLPDL SWLLVTSVMK NIVFHVRTVQ TKMVYQIVTD EASSSSLSSM NITVEDGVSL
0201: SKVVKFSPAD IVDLEVNQET ELYSEEDEVV ELRRSKRRVM RPDRYTGCDY QIDTNDGWVR MMPYRFEKLA VVSMEDEYYE EEEDSGHEDD DDTQNDLFKI
0301: KRSKSLQLKP KRRQGQIVMV EKKRRRGLGV KQRKSLQVIP KRRQGQIVMI GKKRGRGLGR KEKKSGLTVI PFTPVFDPIP LEQFGLNANS LDQGGGFSRN
0401: QYFDEIENYR SKSAKFGKKA TEMEEMMESD LCWKGPNHVV KSVQTRVTRS SSRSAAQKNK CSDEPKVYKK VTLSAGAYNK LIDAYMSNID STIASKNEPA
0501: SVVDQWEELK KTNFASKPHG WEMGGASGED GEGETSENDM LWREMELCLA SSYILDDNEV RVDNEAFEKA KSGCEHEYML DEEIGMCCRL CGHVGSEIKH
0601: VSAPFAKHKK WTIETKQIEE DDIKTKLSHK ESTSKDFTMS NESSEMLTAE ESDNVWALIP HLKRKLHMHQ RRAFEFLWRN LAGSVEPPLM DPTSDNIGGC
0701: VISHAPGAGK TFLMIAFLTS YLKLFPGKRP LVLAPKTTLY TWYKEFIKWE IPVPVHLIHG RRTYCVFKKN SVVNFNRVPK PSQDVMHVLD CLEKIQKWHA
0801: HPSVLVMGYT SFLTLMREDS KFAHRKYMAK VLRESPGLLI LDEGHNPRST KSRLRKGLMK VGTDLRVLLS GTLFQNNFCE YFNTLCLARP KFVHEVLMEL
0901: DQKFKANQGV NKAPHLLENR ARKFFLDNIA KKIDAGVGDE RLQGLNMLRN MTTSFIDNYE GSGGGDALPG LQIYTLLMNS TDIQHKILTK LGNVMASYHG
1001: FLLELELLVT LAAIHPWLVK TSACCAKFLN PQELLEIEKL KPDAKKGSKV MFVLNLVFRV VKREKILIFC HNIAPIRLFI ELFESIFRWQ RGREILTLTG
1101: DQELFERGRV IDKFEEPGNP SRVLLASITA CAEGISLTAA SRVIMLDSEW NPSKTKQAIA RAFRPGQQKV VYVYQLLSRG TLEEDKYKRT TWKEWVSSMI
1201: FSEEFVEDPS LWQAEKIEDD VLREIVGEDR VKSFHMIMKN EKASTG
0101: SVIIGLNQIS ILQKFYKEQS SDQFYRWKFS EDCTTLMKTR LSLGNFLPDL SWLLVTSVMK NIVFHVRTVQ TKMVYQIVTD EASSSSLSSM NITVEDGVSL
0201: SKVVKFSPAD IVDLEVNQET ELYSEEDEVV ELRRSKRRVM RPDRYTGCDY QIDTNDGWVR MMPYRFEKLA VVSMEDEYYE EEEDSGHEDD DDTQNDLFKI
0301: KRSKSLQLKP KRRQGQIVMV EKKRRRGLGV KQRKSLQVIP KRRQGQIVMI GKKRGRGLGR KEKKSGLTVI PFTPVFDPIP LEQFGLNANS LDQGGGFSRN
0401: QYFDEIENYR SKSAKFGKKA TEMEEMMESD LCWKGPNHVV KSVQTRVTRS SSRSAAQKNK CSDEPKVYKK VTLSAGAYNK LIDAYMSNID STIASKNEPA
0501: SVVDQWEELK KTNFASKPHG WEMGGASGED GEGETSENDM LWREMELCLA SSYILDDNEV RVDNEAFEKA KSGCEHEYML DEEIGMCCRL CGHVGSEIKH
0601: VSAPFAKHKK WTIETKQIEE DDIKTKLSHK ESTSKDFTMS NESSEMLTAE ESDNVWALIP HLKRKLHMHQ RRAFEFLWRN LAGSVEPPLM DPTSDNIGGC
0701: VISHAPGAGK TFLMIAFLTS YLKLFPGKRP LVLAPKTTLY TWYKEFIKWE IPVPVHLIHG RRTYCVFKKN SVVNFNRVPK PSQDVMHVLD CLEKIQKWHA
0801: HPSVLVMGYT SFLTLMREDS KFAHRKYMAK VLRESPGLLI LDEGHNPRST KSRLRKGLMK VGTDLRVLLS GTLFQNNFCE YFNTLCLARP KFVHEVLMEL
0901: DQKFKANQGV NKAPHLLENR ARKFFLDNIA KKIDAGVGDE RLQGLNMLRN MTTSFIDNYE GSGGGDALPG LQIYTLLMNS TDIQHKILTK LGNVMASYHG
1001: FLLELELLVT LAAIHPWLVK TSACCAKFLN PQELLEIEKL KPDAKKGSKV MFVLNLVFRV VKREKILIFC HNIAPIRLFI ELFESIFRWQ RGREILTLTG
1101: DQELFERGRV IDKFEEPGNP SRVLLASITA CAEGISLTAA SRVIMLDSEW NPSKTKQAIA RAFRPGQQKV VYVYQLLSRG TLEEDKYKRT TWKEWVSSMI
1201: FSEEFVEDPS LWQAEKIEDD VLREIVGEDR VKSFHMIMKN EKASTG
0001: MKKRGFYNLK HPFDPCPFEF FCSGTWKPVE YMRIEDGMMT IRLLENGYVL EDIRPFQRLR LRSRKAALSD CICFLRPDID VCVLYRIHED DLEPVWVDAR
0101: IVSIERKPHE SECSCKINVR IYIDQGCIGS EKQRINRDSV VIGLNQISIL QKFYKEQSTD QFYRWRFSED CTSLMKTRLS LGKFLPDLSW LTVTSTLKSI
0201: VFQIRTVQTK MVYQIVTDEE GSSSTLSSMN ITLEDGVSLS KVVKFNPADI LDDSQDLEIK QETDYYQEED EVVELRRSKR RNVRPDIYTG CDYEPDTIDG
0301: WVRMMPYQFG KCAVNVESDE DEDDNNEDGD TNDDLYIPLS RLFIKKKKTN SREAKPKSRK GEIVVIDKRR VHGFGRKERK SELSVIPFTP VFEPIPLEQF
0401: GLNANSFGGG GSFSRSQYFD ETEKYRSKGM KYGKKMTEME EMMEADLCWK GPNQVKSFQK RTSRSSRSVA PKTEDSDEPR VYKKVTLSAG AYNKLIDTYM
0501: NNIESTIAAK DEPTSVVDQW EELKKTNFAF KLHGDMEKNL SEDGEGETSE NEMLWREMEL CLASSYILDD NEVRVDNEAF EKARSGCEHD YRLEEEIGMC
0601: CRLCGHVGSE IKDVSAPFAE HKKWTIETKH IEEDDIKTKL SHKEAQTKDF SMISDSSEML AAEESDNVWA LIPKLKRKLH VHQRRAFEFL WRNVAGSVEP
0701: SLMDPTSGNI GGCVISHSPG AGKTFLIIAF LTSYLKLFPG KRPLVLAPKT TLYTWYKEFI KWEIPVPVHL IHGRRTYCTF KQNKTVQFNG VPKPSRDVMH
0801: VLDCLEKIQK WHAHPSVLVM GYTSFTTLMR EDSKFAHRKY MAKVLRESPG LLVLDEGHNP RSTKSRLRKA LMKVGTDLRI LLSGTLFQNN FCEYFNTLCL
0901: ARPKFIHEVL MELDQKFKTN HGVNKAPHLL ENRARKLFLD IIAKKIDASV GDERLQGLNM LKNMTNGFID NYEGSGSGSG DALPGLQIYT LVMNSTDIQH
1001: KILTKLQDVI KTYFGYPLEV ELQITLAAIH PWLVTSSNCC TKFFNPQELS EIGKLKHDAK KGSKVMFVLN LIFRVVKREK ILIFCHNIAP IRMFTELFEN
1101: IFRWQRGREI LTLTGDLELF ERGRVIDKFE EPGNPSRVLL ASITACAEGI SLTAASRVIM LDSEWNPSKT KQAIARAFRP GQQKVVYVYQ LLSRGTLEED
1201: KYRRTTWKEW VSCMIFSEEF VADPSLWQAE KIEDDILREI VGEDKVKSFH MIMKNEKAST G
0101: IVSIERKPHE SECSCKINVR IYIDQGCIGS EKQRINRDSV VIGLNQISIL QKFYKEQSTD QFYRWRFSED CTSLMKTRLS LGKFLPDLSW LTVTSTLKSI
0201: VFQIRTVQTK MVYQIVTDEE GSSSTLSSMN ITLEDGVSLS KVVKFNPADI LDDSQDLEIK QETDYYQEED EVVELRRSKR RNVRPDIYTG CDYEPDTIDG
0301: WVRMMPYQFG KCAVNVESDE DEDDNNEDGD TNDDLYIPLS RLFIKKKKTN SREAKPKSRK GEIVVIDKRR VHGFGRKERK SELSVIPFTP VFEPIPLEQF
0401: GLNANSFGGG GSFSRSQYFD ETEKYRSKGM KYGKKMTEME EMMEADLCWK GPNQVKSFQK RTSRSSRSVA PKTEDSDEPR VYKKVTLSAG AYNKLIDTYM
0501: NNIESTIAAK DEPTSVVDQW EELKKTNFAF KLHGDMEKNL SEDGEGETSE NEMLWREMEL CLASSYILDD NEVRVDNEAF EKARSGCEHD YRLEEEIGMC
0601: CRLCGHVGSE IKDVSAPFAE HKKWTIETKH IEEDDIKTKL SHKEAQTKDF SMISDSSEML AAEESDNVWA LIPKLKRKLH VHQRRAFEFL WRNVAGSVEP
0701: SLMDPTSGNI GGCVISHSPG AGKTFLIIAF LTSYLKLFPG KRPLVLAPKT TLYTWYKEFI KWEIPVPVHL IHGRRTYCTF KQNKTVQFNG VPKPSRDVMH
0801: VLDCLEKIQK WHAHPSVLVM GYTSFTTLMR EDSKFAHRKY MAKVLRESPG LLVLDEGHNP RSTKSRLRKA LMKVGTDLRI LLSGTLFQNN FCEYFNTLCL
0901: ARPKFIHEVL MELDQKFKTN HGVNKAPHLL ENRARKLFLD IIAKKIDASV GDERLQGLNM LKNMTNGFID NYEGSGSGSG DALPGLQIYT LVMNSTDIQH
1001: KILTKLQDVI KTYFGYPLEV ELQITLAAIH PWLVTSSNCC TKFFNPQELS EIGKLKHDAK KGSKVMFVLN LIFRVVKREK ILIFCHNIAP IRMFTELFEN
1101: IFRWQRGREI LTLTGDLELF ERGRVIDKFE EPGNPSRVLL ASITACAEGI SLTAASRVIM LDSEWNPSKT KQAIARAFRP GQQKVVYVYQ LLSRGTLEED
1201: KYRRTTWKEW VSCMIFSEEF VADPSLWQAE KIEDDILREI VGEDKVKSFH MIMKNEKAST G
Arabidopsis Description
CLSY2SNF2 domain-containing protein CLASSY 2 [Source:UniProtKB/Swiss-Prot;Acc:F4K493]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.