Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG88505 | Soybean | endoplasmic reticulum, nucleus | 50.91 | 53.61 |
| PGSC0003DMT400061540 | Potato | nucleus | 54.29 | 53.58 |
| Solyc06g050510.2.1 | Tomato | nucleus | 53.9 | 53.15 |
| KRH73247 | Soybean | nucleus | 52.88 | 51.22 |
| AT3G42670.4 | Thale cress | nucleus | 49.8 | 50.24 |
| AT5G20420.1 | Thale cress | cytosol | 49.65 | 49.96 |
| Bra002302.1-P | Field mustard | cytosol | 49.02 | 49.92 |
| KRG97679 | Soybean | nucleus | 48.38 | 49.72 |
| Bra021058.1-P | Field mustard | nucleus | 49.72 | 49.65 |
| CDX92463 | Canola | nucleus | 49.25 | 49.41 |
| CDY56857 | Canola | cytosol | 49.02 | 49.17 |
| GSMUA_Achr8P01860_001 | Banana | nucleus | 34.2 | 40.19 |
| KXG37026 | Sorghum | nucleus | 33.81 | 34.88 |
| TraesCS2B01G105400.1 | Wheat | nucleus | 34.12 | 34.53 |
| TraesCS2A01G089500.1 | Wheat | plastid | 34.2 | 34.42 |
| TraesCS2D01G087600.1 | Wheat | nucleus | 33.96 | 34.32 |
| HORVU2Hr1G014660.2 | Barley | nucleus | 34.12 | 34.26 |
| VIT_02s0012g00110.t01 | Wine grape | cytosol | 16.71 | 32.87 |
| Zm00001d022576_P001 | Maize | golgi, nucleus, plasma membrane | 33.65 | 32.01 |
| VIT_06s0004g08480.t01 | Wine grape | mitochondrion, plastid | 14.5 | 27.02 |
| VIT_03s0038g04290.t01 | Wine grape | nucleus | 4.57 | 26.24 |
| VIT_03s0038g00030.t01 | Wine grape | nucleus | 16.15 | 21.56 |
| VIT_12s0028g03440.t01 | Wine grape | plastid | 10.09 | 14.65 |
| Os04t0692750-01 | Rice | cytosol | 10.24 | 13.17 |
| VIT_04s0044g01680.t01 | Wine grape | cytosol | 10.4 | 12.66 |
| VIT_07s0005g03670.t01 | Wine grape | nucleus | 11.03 | 11.41 |
| VIT_03s0063g00580.t01 | Wine grape | nucleus | 8.51 | 11.04 |
| VIT_14s0036g01460.t01 | Wine grape | nucleus | 12.69 | 10.9 |
| VIT_15s0024g00350.t01 | Wine grape | mitochondrion | 10.8 | 6.78 |
| Os04t0692700-01 | Rice | nucleus | 0.16 | 0.25 |
Protein Annotations
| EntrezGene:100250037 | wikigene:100250037 | MapMan:12.5.1.10 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | ProteinID:CCB49827 |
| ProteinID:CCB49827.1 | UniProt:F6HCA3 | EMBL:FN595514 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR038718 | EntrezGene:LOC100250037 | wikigene:LOC100250037 |
| InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 |
| PANTHER:PTHR10799:SF792 | SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 |
| TMHMM:TMhelix | UniParc:UPI000210A9F8 | ArrayExpress:VIT_13s0067g01950 | EnsemblPlantsGene:VIT_13s0067g01950 | EnsemblPlants:VIT_13s0067g01950.t01 | RefSeq:XP_002273775 |
| RefSeq:XP_002273775.2 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr13:-:1072521..1078044
Molecular Weight (calculated)
146416.0 Da
IEP (calculated)
6.828
GRAVY (calculated)
-0.449
Length
1269 amino acids
Sequence
(BLAST)
(BLAST)
0001: MRIEDGTVAL HLAESEYVIE EKSPIPNLRI RPRKATLSDC TCFLRPGTEI TVLWTLQQSE SSDEENREPV WIDAKISSIE RRPHEPECSC QFFVNFYITQ
0101: DPLGTEKGTL SKDISVVELD QISILQKLGK YPCEDEHYRW KFSEDCSLLQ RTKLFLGKFS SDLSWLVVTS VLKQAVFDVR SVQNRIVYQI VGGDHDKVSL
0201: NAVNFRVDNG ISTPVIFPFV PADTIEADPL NGTNEAGPLP FCDIVDLRRS KRRNVQPDRF FSLGGFSESD IGSVRAGIHK VDYWRKEEMP LALPDEGDVH
0301: SIFSEKHIID YEKGAHSLQI DSYEDFLVCK SKDRSREVKP ILAAQNEDQH QFAIVPVPLI IEPIAHGEDH LHDETPWNES GEIGEISPKY YCTNGVPKLQ
0401: RKNMSDLYME VESRWEGKGP IRKLRRKRGF TIRTKTESYG EVRPHKKRPF SEPGYKEVIE AYMKNIESTI NKEQPLVIDQ WKELQVRNDL NQRRDCNSPS
0501: SVGDQEESSE TEMLWREMEF SIASSYLLEE NEGSNVEVLK EVVQESSNIS EQVCQHEYIL DEEIGVLCQL CGFVSTEIKD VSPPFFQPTG WITNREWRDE
0601: ENSKRKQAEN DGFNLFSIPA SSDTPLSEGN DNVWALVPDL RKKLRLHQKK AFEFLWKNIA GSMVPALMEQ EVKRRGGCVI SHSPGAGKTF LVISFLVSYL
0701: KLFPGKRPLV LAPKTTLYTW YKEIIKWKVP VPVYQIHGCR TYRYEIYKHK VETSPGIPRP NQDVMHVLDC LEKIQKWHAH PSILLMGYTS FLSLMREDSK
0801: FIHRRYMGEV LRQSPGILVL DEGHNPRSTG SRLRKALMKV KTNLRILLSG TLFQNNFSEY FNTLCLARPK FVNEVLRELD PKFKRNKNRR KRRYSSTESR
0901: ARKFFTDEIA KRINSNVPEE QIEGLNMLRN LTSKFIDVYE GGSSDNLPGL QVYTLLMKST TIQQQFLSKL QKKKDEYKGY PLELELLVTL GSIHPWLITT
1001: AACADKYFSR EELLELKKHK DDVKKGSKVK FVLSLVNRCI IRKEKILIFC HNISPINLFV DIFDKLYKWK KGEDVLVLQG DLELFERGRV MDQFEEPGGA
1101: SKVLLASITA CAEGISLTAA SRVILLDTEW NPSKQKQAVA RAFRPGQERV VYVYQLLETD TLEEEKNSRT NWKEWVSSMI FSEAFVEDPS CWQAEKIEDD
1201: LLREIVEEDW AKSIHMIMKN EKASNGLIRD VVKEMSLQNI QHIMVIMCVY CIISMYNMHN FVCIQNSLV
0101: DPLGTEKGTL SKDISVVELD QISILQKLGK YPCEDEHYRW KFSEDCSLLQ RTKLFLGKFS SDLSWLVVTS VLKQAVFDVR SVQNRIVYQI VGGDHDKVSL
0201: NAVNFRVDNG ISTPVIFPFV PADTIEADPL NGTNEAGPLP FCDIVDLRRS KRRNVQPDRF FSLGGFSESD IGSVRAGIHK VDYWRKEEMP LALPDEGDVH
0301: SIFSEKHIID YEKGAHSLQI DSYEDFLVCK SKDRSREVKP ILAAQNEDQH QFAIVPVPLI IEPIAHGEDH LHDETPWNES GEIGEISPKY YCTNGVPKLQ
0401: RKNMSDLYME VESRWEGKGP IRKLRRKRGF TIRTKTESYG EVRPHKKRPF SEPGYKEVIE AYMKNIESTI NKEQPLVIDQ WKELQVRNDL NQRRDCNSPS
0501: SVGDQEESSE TEMLWREMEF SIASSYLLEE NEGSNVEVLK EVVQESSNIS EQVCQHEYIL DEEIGVLCQL CGFVSTEIKD VSPPFFQPTG WITNREWRDE
0601: ENSKRKQAEN DGFNLFSIPA SSDTPLSEGN DNVWALVPDL RKKLRLHQKK AFEFLWKNIA GSMVPALMEQ EVKRRGGCVI SHSPGAGKTF LVISFLVSYL
0701: KLFPGKRPLV LAPKTTLYTW YKEIIKWKVP VPVYQIHGCR TYRYEIYKHK VETSPGIPRP NQDVMHVLDC LEKIQKWHAH PSILLMGYTS FLSLMREDSK
0801: FIHRRYMGEV LRQSPGILVL DEGHNPRSTG SRLRKALMKV KTNLRILLSG TLFQNNFSEY FNTLCLARPK FVNEVLRELD PKFKRNKNRR KRRYSSTESR
0901: ARKFFTDEIA KRINSNVPEE QIEGLNMLRN LTSKFIDVYE GGSSDNLPGL QVYTLLMKST TIQQQFLSKL QKKKDEYKGY PLELELLVTL GSIHPWLITT
1001: AACADKYFSR EELLELKKHK DDVKKGSKVK FVLSLVNRCI IRKEKILIFC HNISPINLFV DIFDKLYKWK KGEDVLVLQG DLELFERGRV MDQFEEPGGA
1101: SKVLLASITA CAEGISLTAA SRVILLDTEW NPSKQKQAVA RAFRPGQERV VYVYQLLETD TLEEEKNSRT NWKEWVSSMI FSEAFVEDPS CWQAEKIEDD
1201: LLREIVEEDW AKSIHMIMKN EKASNGLIRD VVKEMSLQNI QHIMVIMCVY CIISMYNMHN FVCIQNSLV
0001: MKKRGFYNLK HPFDPCPFEF FCSGTWKPVE YMRIEDGMMT IRLLENGYVL EDIRPFQRLR LRSRKAALSD CICFLRPDID VCVLYRIHED DLEPVWVDAR
0101: IVSIERKPHE SECSCKINVR IYIDQGCIGS EKQRINRDSV VIGLNQISIL QKFYKEQSTD QFYRWRFSED CTSLMKTRLS LGKFLPDLSW LTVTSTLKSI
0201: VFQIRTVQTK MVYQIVTDEE GSSSTLSSMN ITLEDGVSLS KVVKFNPADI LDDSQDLEIK QETDYYQEED EVVELRRSKR RNVRPDIYTG CDYEPDTIDG
0301: WVRMMPYQFG KCAVNVESDE DEDDNNEDGD TNDDLYIPLS RLFIKKKKTN SREAKPKSRK GEIVVIDKRR VHGFGRKERK SELSVIPFTP VFEPIPLEQF
0401: GLNANSFGGG GSFSRSQYFD ETEKYRSKGM KYGKKMTEME EMMEADLCWK GPNQVKSFQK RTSRSSRSVA PKTEDSDEPR VYKKVTLSAG AYNKLIDTYM
0501: NNIESTIAAK DEPTSVVDQW EELKKTNFAF KLHGDMEKNL SEDGEGETSE NEMLWREMEL CLASSYILDD NEVRVDNEAF EKARSGCEHD YRLEEEIGMC
0601: CRLCGHVGSE IKDVSAPFAE HKKWTIETKH IEEDDIKTKL SHKEAQTKDF SMISDSSEML AAEESDNVWA LIPKLKRKLH VHQRRAFEFL WRNVAGSVEP
0701: SLMDPTSGNI GGCVISHSPG AGKTFLIIAF LTSYLKLFPG KRPLVLAPKT TLYTWYKEFI KWEIPVPVHL IHGRRTYCTF KQNKTVQFNG VPKPSRDVMH
0801: VLDCLEKIQK WHAHPSVLVM GYTSFTTLMR EDSKFAHRKY MAKVLRESPG LLVLDEGHNP RSTKSRLRKA LMKVGTDLRI LLSGTLFQNN FCEYFNTLCL
0901: ARPKFIHEVL MELDQKFKTN HGVNKAPHLL ENRARKLFLD IIAKKIDASV GDERLQGLNM LKNMTNGFID NYEGSGSGSG DALPGLQIYT LVMNSTDIQH
1001: KILTKLQDVI KTYFGYPLEV ELQITLAAIH PWLVTSSNCC TKFFNPQELS EIGKLKHDAK KGSKVMFVLN LIFRVVKREK ILIFCHNIAP IRMFTELFEN
1101: IFRWQRGREI LTLTGDLELF ERGRVIDKFE EPGNPSRVLL ASITACAEGI SLTAASRVIM LDSEWNPSKT KQAIARAFRP GQQKVVYVYQ LLSRGTLEED
1201: KYRRTTWKEW VSCMIFSEEF VADPSLWQAE KIEDDILREI VGEDKVKSFH MIMKNEKAST G
0101: IVSIERKPHE SECSCKINVR IYIDQGCIGS EKQRINRDSV VIGLNQISIL QKFYKEQSTD QFYRWRFSED CTSLMKTRLS LGKFLPDLSW LTVTSTLKSI
0201: VFQIRTVQTK MVYQIVTDEE GSSSTLSSMN ITLEDGVSLS KVVKFNPADI LDDSQDLEIK QETDYYQEED EVVELRRSKR RNVRPDIYTG CDYEPDTIDG
0301: WVRMMPYQFG KCAVNVESDE DEDDNNEDGD TNDDLYIPLS RLFIKKKKTN SREAKPKSRK GEIVVIDKRR VHGFGRKERK SELSVIPFTP VFEPIPLEQF
0401: GLNANSFGGG GSFSRSQYFD ETEKYRSKGM KYGKKMTEME EMMEADLCWK GPNQVKSFQK RTSRSSRSVA PKTEDSDEPR VYKKVTLSAG AYNKLIDTYM
0501: NNIESTIAAK DEPTSVVDQW EELKKTNFAF KLHGDMEKNL SEDGEGETSE NEMLWREMEL CLASSYILDD NEVRVDNEAF EKARSGCEHD YRLEEEIGMC
0601: CRLCGHVGSE IKDVSAPFAE HKKWTIETKH IEEDDIKTKL SHKEAQTKDF SMISDSSEML AAEESDNVWA LIPKLKRKLH VHQRRAFEFL WRNVAGSVEP
0701: SLMDPTSGNI GGCVISHSPG AGKTFLIIAF LTSYLKLFPG KRPLVLAPKT TLYTWYKEFI KWEIPVPVHL IHGRRTYCTF KQNKTVQFNG VPKPSRDVMH
0801: VLDCLEKIQK WHAHPSVLVM GYTSFTTLMR EDSKFAHRKY MAKVLRESPG LLVLDEGHNP RSTKSRLRKA LMKVGTDLRI LLSGTLFQNN FCEYFNTLCL
0901: ARPKFIHEVL MELDQKFKTN HGVNKAPHLL ENRARKLFLD IIAKKIDASV GDERLQGLNM LKNMTNGFID NYEGSGSGSG DALPGLQIYT LVMNSTDIQH
1001: KILTKLQDVI KTYFGYPLEV ELQITLAAIH PWLVTSSNCC TKFFNPQELS EIGKLKHDAK KGSKVMFVLN LIFRVVKREK ILIFCHNIAP IRMFTELFEN
1101: IFRWQRGREI LTLTGDLELF ERGRVIDKFE EPGNPSRVLL ASITACAEGI SLTAASRVIM LDSEWNPSKT KQAIARAFRP GQQKVVYVYQ LLSRGTLEED
1201: KYRRTTWKEW VSCMIFSEEF VADPSLWQAE KIEDDILREI VGEDKVKSFH MIMKNEKAST G
Arabidopsis Description
CLSY2SNF2 domain-containing protein CLASSY 2 [Source:UniProtKB/Swiss-Prot;Acc:F4K493]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.