Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P25070_001 | Banana | golgi | 11.24 | 65.61 |
| GSMUA_Achr4P25080_001 | Banana | nucleus | 48.82 | 63.92 |
| CDX95047 | Canola | nucleus | 61.34 | 61.22 |
| AT1G08600.3 | Thale cress | nucleus | 61.21 | 61.12 |
| CDX93550 | Canola | nucleus | 61.21 | 60.55 |
| Solyc04g050160.2.1 | Tomato | nucleus | 12.19 | 57.14 |
| KXG38419 | Sorghum | nucleus | 55.92 | 55.7 |
| Zm00001d032801_P005 | Maize | nucleus | 55.65 | 55.39 |
| TraesCS1A01G144000.3 | Wheat | nucleus | 55.86 | 55.04 |
| TraesCS1D01G143000.1 | Wheat | nucleus | 55.52 | 54.92 |
| HORVU1Hr1G038370.1 | Barley | nucleus | 55.18 | 54.77 |
| TraesCS1B01G161400.5 | Wheat | nucleus | 55.65 | 51.8 |
| Bra018612.1-P | Field mustard | nucleus | 61.34 | 34.97 |
| VIT_02s0012g00110.t01 | Wine grape | cytosol | 9.95 | 22.79 |
| VIT_12s0028g03440.t01 | Wine grape | plastid | 13.07 | 22.08 |
| VIT_06s0004g08480.t01 | Wine grape | mitochondrion, plastid | 9.88 | 21.44 |
| Os07t0692600-01 | Rice | mitochondrion | 6.7 | 20.84 |
| VIT_03s0063g00580.t01 | Wine grape | nucleus | 13.0 | 19.63 |
| VIT_04s0044g01680.t01 | Wine grape | cytosol | 13.61 | 19.27 |
| VIT_07s0005g03670.t01 | Wine grape | nucleus | 15.23 | 18.34 |
| VIT_03s0038g04290.t01 | Wine grape | nucleus | 2.71 | 18.1 |
| VIT_03s0038g00030.t01 | Wine grape | nucleus | 10.36 | 16.09 |
| VIT_13s0067g01950.t01 | Wine grape | nucleus | 10.9 | 12.69 |
| VIT_15s0024g00350.t01 | Wine grape | mitochondrion | 14.62 | 10.68 |
| Os02t0161200-01 | Rice | nucleus | 1.76 | 6.1 |
| Os07t0692500-01 | Rice | cytosol | 1.96 | 5.1 |
| KRH77275 | Soybean | cytosol | 0.2 | 3.26 |
| KRH28211 | Soybean | mitochondrion | 0.2 | 3.26 |
| Os07t0692401-00 | Rice | mitochondrion | 0.2 | 0.62 |
Protein Annotations
| EntrezGene:100244360 | wikigene:100244360 | MapMan:12.4.1.3.2 | Gene3D:3.40.50.10810 | InterPro:ADD | EMBL:AM481253 |
| ProteinID:CAN70868 | ProteinID:CAN70868.1 | ProteinID:CBI22318 | ProteinID:CBI22318.3 | ncoils:Coil | UniProt:E0CU60 |
| EMBL:FN595241 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR025766 | InterPro:IPR038718 | EntrezGene:LOC100244360 |
| wikigene:LOC100244360 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 |
| PFscan:PS51533 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF843 | SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf |
| InterPro:SNF2_N | SUPFAM:SSF52540 | TIGR:TC54386 | UniParc:UPI0001BE1D6E | ArrayExpress:VIT_14s0036g01460 | EnsemblPlantsGene:VIT_14s0036g01460 |
| EnsemblPlants:VIT_14s0036g01460.t01 | unigene:Vvi.3850 | RefSeq:XP_002263799 | RefSeq:XP_002263799.2 | SEG:seg | : |
Description
No Description!
Coordinates
chr14:-:12730219..12834933
Molecular Weight (calculated)
167416.0 Da
IEP (calculated)
5.691
GRAVY (calculated)
-0.599
Length
1477 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTSGQDDGLH LEVTLTEEEI EELIAEFLDV ESKAAEAQES LEEESLSKLE IEVREELAQT LQGNDLETAV AEEMANFKEE WEAVLDELET ESAHLLEQLD
0101: GAGIELPSLY KWIESQAPNG CCTEAWKQRV HWIGSQVTGD TTESIIEAEK HLQTDRPVRR RHGKLLEEGA SGYLANKLAS DGNREAVTEN AEVDWCSFNK
0201: CFSDHASEDS TLFGSEHWAS VYLASTPQQA AVMGLKFPGV DEVEEIDDID GNSSDPFVAD AIANERAVDL SEEQKKKFKK VKEEDDANID RKLQLHLKRR
0301: RYRKRSTQET IQKEDRLAEN ILDNSVLLND YSQAVLREKT RGDGVSISNN NDDGACQSSK TEVSESLEMP DTLDKERPAS NGNSSVLSGS VLPDSTETKG
0401: FKRSHDNGEL DVDNKRFRTV IIDSDDETHE VGNVSNSLVN NMTKMEGQSV LQETEGDFVG SGSLPSKHMN GNFHCTACNK VAIEVHCHPL LKVIICGDCK
0501: CLIERKMHVK DPDCSECYCG WCGRSNDLVG CKSCKTLFCI TCIKRNIGEE CLSDVKASGW QCCCCSPSLL QQLTSELEKA IGSSSLTVSS SDSDSDDSDE
0601: DINVAISSKR RRKKKIRRIL DDAELGEETK RKIAIEKERQ ERLKSLQVQF SEKSKMMNAA SCNGNLSEDT SVEVLGDASK GYIVNVVREK GEEAVRIPPS
0701: ISAKLKVHQI TGIRFMWENI IQSIRKVKSG DKGLGCILAH TMGLGKTFQV IAFLYTAMRS IDLGLRTALI VTPVNVLHNW RQEFIKWRPL ELKPLRVFML
0801: EDVSRERRAE LLAKWRAKGG VFLIGYSAFR NLSLGKNVKD RHMAREICYA LQDGPDILVC DEAHMIKNTR ADTTQALKQV KCQRRIALTG SPLQNNLMEY
0901: YCMVDFVREG FLGSSHEFRN RFQNPIENGQ HMNSTSDDVK IMNQRSHILY EQLKGFVQRM DMSVVKNDLP PKTVFVMAVK LSSLQRKLYK RFLDVHGFTN
1001: DKVSSDKIRK RCFFAGYQAL AQIWNHPGIL QLTKEEKDYA RREDGVENFL ADDSSSDDNI DYNTVLGEKV RNKNEIQQGK VDSGLYQKGW WNDLLHENNY
1101: KEVDYSGKMV LLLDILTMCA DVGDKALVFS QSLSTLDLIE YYLSKLSRQG KKGKCWKQGK DWYRLDGRTE GSERQKLVER FNDPLNKRVK CTLISTRAGS
1201: LGINLHSANR VIIVDGSWNP TYDLQAIYRA WRYGQTKPVF AYRLMAHGTM EEKIYKRQVT KEGLAARVVD RQQVHRTISK EEMLHLFDFG DDENPDILPE
1301: RGKEEEHTTN QNMTGQVGNS LKDKLSLSHG SCSSDKLMES LLVRHYPRWI ANYHEHETLL QENEEEKLSK EEQDMAWEVY RRTLEWEEVQ RVPLDESTFE
1401: RKPAVSNAAP LVTESISLSE TKISRLRNHL VQRKCTNLSH MLTLRSQGTK VGCSTVCGEC AQEISWEDLN RDGRAVR
0101: GAGIELPSLY KWIESQAPNG CCTEAWKQRV HWIGSQVTGD TTESIIEAEK HLQTDRPVRR RHGKLLEEGA SGYLANKLAS DGNREAVTEN AEVDWCSFNK
0201: CFSDHASEDS TLFGSEHWAS VYLASTPQQA AVMGLKFPGV DEVEEIDDID GNSSDPFVAD AIANERAVDL SEEQKKKFKK VKEEDDANID RKLQLHLKRR
0301: RYRKRSTQET IQKEDRLAEN ILDNSVLLND YSQAVLREKT RGDGVSISNN NDDGACQSSK TEVSESLEMP DTLDKERPAS NGNSSVLSGS VLPDSTETKG
0401: FKRSHDNGEL DVDNKRFRTV IIDSDDETHE VGNVSNSLVN NMTKMEGQSV LQETEGDFVG SGSLPSKHMN GNFHCTACNK VAIEVHCHPL LKVIICGDCK
0501: CLIERKMHVK DPDCSECYCG WCGRSNDLVG CKSCKTLFCI TCIKRNIGEE CLSDVKASGW QCCCCSPSLL QQLTSELEKA IGSSSLTVSS SDSDSDDSDE
0601: DINVAISSKR RRKKKIRRIL DDAELGEETK RKIAIEKERQ ERLKSLQVQF SEKSKMMNAA SCNGNLSEDT SVEVLGDASK GYIVNVVREK GEEAVRIPPS
0701: ISAKLKVHQI TGIRFMWENI IQSIRKVKSG DKGLGCILAH TMGLGKTFQV IAFLYTAMRS IDLGLRTALI VTPVNVLHNW RQEFIKWRPL ELKPLRVFML
0801: EDVSRERRAE LLAKWRAKGG VFLIGYSAFR NLSLGKNVKD RHMAREICYA LQDGPDILVC DEAHMIKNTR ADTTQALKQV KCQRRIALTG SPLQNNLMEY
0901: YCMVDFVREG FLGSSHEFRN RFQNPIENGQ HMNSTSDDVK IMNQRSHILY EQLKGFVQRM DMSVVKNDLP PKTVFVMAVK LSSLQRKLYK RFLDVHGFTN
1001: DKVSSDKIRK RCFFAGYQAL AQIWNHPGIL QLTKEEKDYA RREDGVENFL ADDSSSDDNI DYNTVLGEKV RNKNEIQQGK VDSGLYQKGW WNDLLHENNY
1101: KEVDYSGKMV LLLDILTMCA DVGDKALVFS QSLSTLDLIE YYLSKLSRQG KKGKCWKQGK DWYRLDGRTE GSERQKLVER FNDPLNKRVK CTLISTRAGS
1201: LGINLHSANR VIIVDGSWNP TYDLQAIYRA WRYGQTKPVF AYRLMAHGTM EEKIYKRQVT KEGLAARVVD RQQVHRTISK EEMLHLFDFG DDENPDILPE
1301: RGKEEEHTTN QNMTGQVGNS LKDKLSLSHG SCSSDKLMES LLVRHYPRWI ANYHEHETLL QENEEEKLSK EEQDMAWEVY RRTLEWEEVQ RVPLDESTFE
1401: RKPAVSNAAP LVTESISLSE TKISRLRNHL VQRKCTNLSH MLTLRSQGTK VGCSTVCGEC AQEISWEDLN RDGRAVR
0001: MEANEESLKG KIEKLEGKEV IVESKEDEMD IIIEENREAE QEVMEVKARD GRGEQNDVLM EENNNQGEQK DEEMQDASSR SESSDFNSDE DEQILSRRDD
0101: ELDLEKPLSE EEIDELISDL LAVESKAAEA QEALEKESLS KVESEVREEL AQALRGDELD EAVAAEMMTF KDEWEATLDE LETESATLLE QLDGAGIELP
0201: KLYEMIESQA PNGCYTEAWK QRAHWVGTQV TKETVESLAN AERFLHTHRP VRKRHGKLLE EGASGFLEKK LADGAVKESL AGTSELDWSS LNKVFSEKRD
0301: ESVSFGSKQW ASVYLASTPH QAAAMGLEFP GVNEVEEIEE IDASLADPFL ADAIDNEREL ALTEEQKTNY IRVKEEDDIT CDRVLQLRLK RKRRKKRSKQ
0401: VIRCAAENMD DDSVYLDGNN TTPNFAKDQV KSPETSTQVH NSEVNIEENG NFSNSDVDKM TPSTHINVDA KRDDSQNPAN NFRCTACNKV AVEVHSHPLL
0501: EVIVCMDCKR SIEDRVSKVD DSLERHCEWC GHIADLIDCR TCEKLFCASC IKRNIGEEYM SEAQSSGWDC CCCSPIPLQR LTLELEKAMR DKKSIELSSD
0601: SSSDSSSDNN SVDTDADVNV TISSKKKSKK KIRRIIDDAE LGKDTRTKIA IEKARQERLR SLQFSARYKT ISSMGDVKSI PEGAEVEVLG DAHSGYIVNV
0701: VREIGEEAVR VPRSISAKLK VHQVTGIRFM WENIIQSISR VKSGDKGLGC ILAHTMGLGK TFQVIAFLYT AMRCVDLGLK TALIVTPVNV LHNWRSEFEK
0801: WMPSEVKPLR IFMLGDVSRE RRFDLLTKWR KKGGVFLMGY TNFRNLSLGR GVKDLNAARG ICNALRDGPD ILVCDEAHII KNTKADTTQA LKQVKCQRRI
0901: ALTGSPLQNN LMEYYCMVDF VREGFLGSSP EFRNRFQNPI ENGQHMNSTA EDVKIMNQRS HILYEQLKGF VQRMDMNVVK KDLPPKTVFV ISVKLSPLQR
1001: ILYQRFLELY GFSDGRTDER MRKNFFAAYQ VLAQILNHPG IPQLRSEDSK NGRRGSIVDI PDDCSSDENI DYNMVTGEKQ RTMNDLQDKV DGYLQKDWWV
1101: DLLQKNNYKV SDFSGKMILL LDILSMSADV GDKALVFSQS IPTLDLIELY LSRVPRHGKQ GKFWKKGKDW YRIDGKTESS ERQKLVDRFN EPDNKRVKCT
1201: LISTRAGSLG INLYAANRVI IVDGSWNPTY DLQAIFRAWR YGQKKPVFAY RLMARGTIEE KIYKRQVTKE GLAARVVDRQ QVHRTISKEE MLHLFEFDDD
1301: DEKSEAVTEI SKQNEAGHSN LVEQAILWTK KATLSRVGGD KLMENLLQRH GPNWISSFHE HETLLQENEE ERLTKEEKDM AWEVYRRALE WEEVQRVPFS
1401: ESPVVPKPSP STQTEPLPQP KGFNRSRFVN RNCTRIAHQL TLISQGLKVG SSTVCGECGR VIRWEDVIPA SKLSAVIVN
0101: ELDLEKPLSE EEIDELISDL LAVESKAAEA QEALEKESLS KVESEVREEL AQALRGDELD EAVAAEMMTF KDEWEATLDE LETESATLLE QLDGAGIELP
0201: KLYEMIESQA PNGCYTEAWK QRAHWVGTQV TKETVESLAN AERFLHTHRP VRKRHGKLLE EGASGFLEKK LADGAVKESL AGTSELDWSS LNKVFSEKRD
0301: ESVSFGSKQW ASVYLASTPH QAAAMGLEFP GVNEVEEIEE IDASLADPFL ADAIDNEREL ALTEEQKTNY IRVKEEDDIT CDRVLQLRLK RKRRKKRSKQ
0401: VIRCAAENMD DDSVYLDGNN TTPNFAKDQV KSPETSTQVH NSEVNIEENG NFSNSDVDKM TPSTHINVDA KRDDSQNPAN NFRCTACNKV AVEVHSHPLL
0501: EVIVCMDCKR SIEDRVSKVD DSLERHCEWC GHIADLIDCR TCEKLFCASC IKRNIGEEYM SEAQSSGWDC CCCSPIPLQR LTLELEKAMR DKKSIELSSD
0601: SSSDSSSDNN SVDTDADVNV TISSKKKSKK KIRRIIDDAE LGKDTRTKIA IEKARQERLR SLQFSARYKT ISSMGDVKSI PEGAEVEVLG DAHSGYIVNV
0701: VREIGEEAVR VPRSISAKLK VHQVTGIRFM WENIIQSISR VKSGDKGLGC ILAHTMGLGK TFQVIAFLYT AMRCVDLGLK TALIVTPVNV LHNWRSEFEK
0801: WMPSEVKPLR IFMLGDVSRE RRFDLLTKWR KKGGVFLMGY TNFRNLSLGR GVKDLNAARG ICNALRDGPD ILVCDEAHII KNTKADTTQA LKQVKCQRRI
0901: ALTGSPLQNN LMEYYCMVDF VREGFLGSSP EFRNRFQNPI ENGQHMNSTA EDVKIMNQRS HILYEQLKGF VQRMDMNVVK KDLPPKTVFV ISVKLSPLQR
1001: ILYQRFLELY GFSDGRTDER MRKNFFAAYQ VLAQILNHPG IPQLRSEDSK NGRRGSIVDI PDDCSSDENI DYNMVTGEKQ RTMNDLQDKV DGYLQKDWWV
1101: DLLQKNNYKV SDFSGKMILL LDILSMSADV GDKALVFSQS IPTLDLIELY LSRVPRHGKQ GKFWKKGKDW YRIDGKTESS ERQKLVDRFN EPDNKRVKCT
1201: LISTRAGSLG INLYAANRVI IVDGSWNPTY DLQAIFRAWR YGQKKPVFAY RLMARGTIEE KIYKRQVTKE GLAARVVDRQ QVHRTISKEE MLHLFEFDDD
1301: DEKSEAVTEI SKQNEAGHSN LVEQAILWTK KATLSRVGGD KLMENLLQRH GPNWISSFHE HETLLQENEE ERLTKEEKDM AWEVYRRALE WEEVQRVPFS
1401: ESPVVPKPSP STQTEPLPQP KGFNRSRFVN RNCTRIAHQL TLISQGLKVG SSTVCGECGR VIRWEDVIPA SKLSAVIVN
Arabidopsis Description
ATRXCHR20 [Source:UniProtKB/TrEMBL;Acc:A0A178VZQ9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.