Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX93550 | Canola | nucleus | 96.28 | 95.45 |
| AT1G08600.3 | Thale cress | nucleus | 83.65 | 83.71 |
| CDY22674 | Canola | nucleus | 40.27 | 77.4 |
| CDY06321 | Canola | nucleus | 26.28 | 66.84 |
| VIT_14s0036g01460.t01 | Wine grape | nucleus | 61.22 | 61.34 |
| KRH34128 | Soybean | nucleus | 45.74 | 59.96 |
| KRG92726 | Soybean | nucleus | 59.8 | 59.6 |
| Solyc04g050150.2.1 | Tomato | nucleus | 47.03 | 57.19 |
| GSMUA_Achr4P25080_001 | Banana | nucleus | 43.24 | 56.74 |
| Solyc04g050160.2.1 | Tomato | nucleus | 11.42 | 53.65 |
| GSMUA_Achr4P25070_001 | Banana | golgi | 8.85 | 51.78 |
| CDX78226 | Canola | cytosol | 3.31 | 26.49 |
| CDX92308 | Canola | nucleus | 13.99 | 22.72 |
| CDX99258 | Canola | nucleus | 13.78 | 22.49 |
| CDY67491 | Canola | cytosol | 2.36 | 22.15 |
| CDX77430 | Canola | nucleus | 9.73 | 21.4 |
| CDY23754 | Canola | cytosol | 10.41 | 19.97 |
| CDY37734 | Canola | nucleus | 10.2 | 19.97 |
| CDY29038 | Canola | nucleus | 2.36 | 19.89 |
| CDY59589 | Canola | nucleus | 2.36 | 19.89 |
| Os07t0692600-01 | Rice | mitochondrion | 6.35 | 19.79 |
| CDX92882 | Canola | nucleus | 14.66 | 19.22 |
| CDY51705 | Canola | nucleus | 14.8 | 18.9 |
| CDX89710 | Canola | nucleus | 10.0 | 17.13 |
| CDX84469 | Canola | cytosol, mitochondrion, nucleus, plastid | 12.43 | 16.06 |
| CDY16534 | Canola | nucleus | 4.73 | 16.05 |
| CDY43772 | Canola | mitochondrion | 12.36 | 15.78 |
| CDX93009 | Canola | nucleus | 10.34 | 15.77 |
| CDX94823 | Canola | nucleus | 10.27 | 15.61 |
| CDY66441 | Canola | nucleus | 10.34 | 14.81 |
| CDY56857 | Canola | cytosol | 10.81 | 12.65 |
| CDX92463 | Canola | nucleus | 10.61 | 12.41 |
| CDY10115 | Canola | nucleus | 11.01 | 11.82 |
| CDY47279 | Canola | nucleus | 10.68 | 11.82 |
| CDY37413 | Canola | mitochondrion, nucleus | 12.57 | 11.61 |
| CDY32510 | Canola | mitochondrion, nucleus | 12.57 | 11.58 |
| CDX73492 | Canola | mitochondrion | 14.73 | 10.48 |
| CDX78225 | Canola | mitochondrion | 11.69 | 8.57 |
| Os02t0161200-01 | Rice | nucleus | 2.03 | 7.04 |
| CDY13196 | Canola | cytosol, nucleus, plastid | 1.08 | 4.08 |
| Os07t0692500-01 | Rice | cytosol | 1.35 | 3.51 |
| KRH28211 | Soybean | mitochondrion | 0.14 | 2.17 |
| KRH77275 | Soybean | cytosol | 0.14 | 2.17 |
| Os07t0692401-00 | Rice | mitochondrion | 0.2 | 0.62 |
Protein Annotations
| MapMan:12.4.1.3.2 | Gene3D:3.40.50.10810 | GO:A0A078E1P1 | InterPro:ADD | EnsemblPlants:CDX95047 | ProteinID:CDX95047 |
| ProteinID:CDX95047.1 | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 |
| EnsemblPlantsGene:GSBRNA2T00100567001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR025766 |
| InterPro:IPR038718 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 |
| PFscan:PS51533 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF843 | SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf |
| InterPro:SNF2_N | SUPFAM:SSF52540 | UniParc:UPI0004EDB52F | SEG:seg | : | : |
Description
BnaC05g06240D
Coordinates
chrLK031886:-:869128..878880
Molecular Weight (calculated)
168476.0 Da
IEP (calculated)
5.357
GRAVY (calculated)
-0.642
Length
1480 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEGKEEEMDR SEDIMDVEIE KEQNDEVMEE NNNQDEEMQD TDLRSESSVS NSDEEEGLRS GNDDELDLEK PLSEEEVDEL ISDLLGVESK AAEAQESLEK
0101: ESLSKVESEV REELAQTLHG DELDKAVEAE MMTFKDEWEA TLDELETESA NLLEQLDGAG IELPKLYEMI ESQAPNGCYT EAWKKRAHWV GTQVTKETGE
0201: SLAKAESFLL THRPVRKRHG KLLEEGASGF LEKKFADDAV KECLTGTSEL DWSSLNKVFS EKRDEAISFG SKHWASVYLA STPQQAAAMG LEFPGVNEVE
0301: EIEEIDESLA DPFFADAIEN ERELALTGEQ KKNYIRVKEE DDINIDRELQ LRLKRKRRKK RSKQVIRHTA EDRDDDSAYL YGNSIAPDPA EDQVKCPENS
0401: IEFQNNEVNK QENGNLSNSD ADKMVPVADL NVDTMRDDSQ NPASNFRCTA CNNVTVEVHS HPLLDVIVCM DCKRLIEDRV AKQLDASLER HCEWCGHVAD
0501: LINCRSCEKL FCASCIKRNI GDEYLSEAQS SGWDCCCCAP IPLRRLTLEL EKAMGDKKSM ESSSDSSSDS SSDSSSDDNS VDTDADVTVA VSSKKKLKKK
0601: IRRIIDDAEL GKDTRSKIAI EKKRQERLRS LQFSARYKTI SSMGDVKIPE GAEAEVLGDA HSGYIVNVAR EIGEEAVRVP RSISAKLKPH QVTGIRFMWE
0701: NIIQSINSVK SGDKGLGCIL AHTMGLGKTF QVIAFLYTAM RCVDLGLKSA LIVTPVNVLH NWRSEFTKWM PSEVKPLRIF MLEDVSRERR LDLLRKWRNK
0801: GGVFLMGYAA FRNLSLGRGV KDINAAKEFC SALRDGPDIL VCDEAHIIKN TRADTTQALK QVKCQRRIAL TGSPLQNNLM EYYCMVDFVR EGFLGSSPEF
0901: RNRFQNPIEN GQHMNSTAED VKIMNQRSHI LYEELKGFVQ RMDMNVVKKD LPPKTVFVIS VKLSPLQRKL YKRFLKLYGF NDGRADERMR KNFFAAYQVL
1001: AQILNHPGIP QLRSEDKRQG RRGSIVDIPD DCSSDENLDC NMVVGEKQRN MSDLQDKVDG YLQKDWWVDL LQKNNYKVSE YSGKMILLLD ILSMCAHVGD
1101: KALVFSQSIP TLDLIELYLS RVPRHGKHGK CWKKGKDWYR IDGKTESSER QKLVDRFNEP ENKRVKCTLI STRAGSLGIN LYAANRVIIV DGSWNPTYDL
1201: QAIFRAWRYG QKKPVFAYRL MARGTIEEKI YKRQVNKEGL AARVVDRQQV HRTISKEEML HLFEFDDDDE KSDAVTEISK RKEAATSSRG CDSDKLMENL
1301: LQRHSPDWIS SFHEHETLLQ ENEDERLTKE EKDMAWEVYR KALQWEEVQR APVSEAPVLQ KPSPSPQIQP LRHPRGFNRS RFVNRSCTRI AHQLTLVSQG
1401: RKVGSSTICG ECGCVIRWED VLPAPKLSES NHIIARGPRL IPNLAKISDD HVIGNSIWNR TRHYQDSQDS HCFIHLIDSG
0101: ESLSKVESEV REELAQTLHG DELDKAVEAE MMTFKDEWEA TLDELETESA NLLEQLDGAG IELPKLYEMI ESQAPNGCYT EAWKKRAHWV GTQVTKETGE
0201: SLAKAESFLL THRPVRKRHG KLLEEGASGF LEKKFADDAV KECLTGTSEL DWSSLNKVFS EKRDEAISFG SKHWASVYLA STPQQAAAMG LEFPGVNEVE
0301: EIEEIDESLA DPFFADAIEN ERELALTGEQ KKNYIRVKEE DDINIDRELQ LRLKRKRRKK RSKQVIRHTA EDRDDDSAYL YGNSIAPDPA EDQVKCPENS
0401: IEFQNNEVNK QENGNLSNSD ADKMVPVADL NVDTMRDDSQ NPASNFRCTA CNNVTVEVHS HPLLDVIVCM DCKRLIEDRV AKQLDASLER HCEWCGHVAD
0501: LINCRSCEKL FCASCIKRNI GDEYLSEAQS SGWDCCCCAP IPLRRLTLEL EKAMGDKKSM ESSSDSSSDS SSDSSSDDNS VDTDADVTVA VSSKKKLKKK
0601: IRRIIDDAEL GKDTRSKIAI EKKRQERLRS LQFSARYKTI SSMGDVKIPE GAEAEVLGDA HSGYIVNVAR EIGEEAVRVP RSISAKLKPH QVTGIRFMWE
0701: NIIQSINSVK SGDKGLGCIL AHTMGLGKTF QVIAFLYTAM RCVDLGLKSA LIVTPVNVLH NWRSEFTKWM PSEVKPLRIF MLEDVSRERR LDLLRKWRNK
0801: GGVFLMGYAA FRNLSLGRGV KDINAAKEFC SALRDGPDIL VCDEAHIIKN TRADTTQALK QVKCQRRIAL TGSPLQNNLM EYYCMVDFVR EGFLGSSPEF
0901: RNRFQNPIEN GQHMNSTAED VKIMNQRSHI LYEELKGFVQ RMDMNVVKKD LPPKTVFVIS VKLSPLQRKL YKRFLKLYGF NDGRADERMR KNFFAAYQVL
1001: AQILNHPGIP QLRSEDKRQG RRGSIVDIPD DCSSDENLDC NMVVGEKQRN MSDLQDKVDG YLQKDWWVDL LQKNNYKVSE YSGKMILLLD ILSMCAHVGD
1101: KALVFSQSIP TLDLIELYLS RVPRHGKHGK CWKKGKDWYR IDGKTESSER QKLVDRFNEP ENKRVKCTLI STRAGSLGIN LYAANRVIIV DGSWNPTYDL
1201: QAIFRAWRYG QKKPVFAYRL MARGTIEEKI YKRQVNKEGL AARVVDRQQV HRTISKEEML HLFEFDDDDE KSDAVTEISK RKEAATSSRG CDSDKLMENL
1301: LQRHSPDWIS SFHEHETLLQ ENEDERLTKE EKDMAWEVYR KALQWEEVQR APVSEAPVLQ KPSPSPQIQP LRHPRGFNRS RFVNRSCTRI AHQLTLVSQG
1401: RKVGSSTICG ECGCVIRWED VLPAPKLSES NHIIARGPRL IPNLAKISDD HVIGNSIWNR TRHYQDSQDS HCFIHLIDSG
0001: MEANEESLKG KIEKLEGKEV IVESKEDEMD IIIEENREAE QEVMEVKARD GRGEQNDVLM EENNNQGEQK DEEMQDASSR SESSDFNSDE DEQILSRRDD
0101: ELDLEKPLSE EEIDELISDL LAVESKAAEA QEALEKESLS KVESEVREEL AQALRGDELD EAVAAEMMTF KDEWEATLDE LETESATLLE QLDGAGIELP
0201: KLYEMIESQA PNGCYTEAWK QRAHWVGTQV TKETVESLAN AERFLHTHRP VRKRHGKLLE EGASGFLEKK LADGAVKESL AGTSELDWSS LNKVFSEKRD
0301: ESVSFGSKQW ASVYLASTPH QAAAMGLEFP GVNEVEEIEE IDASLADPFL ADAIDNEREL ALTEEQKTNY IRVKEEDDIT CDRVLQLRLK RKRRKKRSKQ
0401: VIRCAAENMD DDSVYLDGNN TTPNFAKDQV KSPETSTQVH NSEVNIEENG NFSNSDVDKM TPSTHINVDA KRDDSQNPAN NFRCTACNKV AVEVHSHPLL
0501: EVIVCMDCKR SIEDRVSKVD DSLERHCEWC GHIADLIDCR TCEKLFCASC IKRNIGEEYM SEAQSSGWDC CCCSPIPLQR LTLELEKAMR DKKSIELSSD
0601: SSSDSSSDNN SVDTDADVNV TISSKKKSKK KIRRIIDDAE LGKDTRTKIA IEKARQERLR SLQFSARYKT ISSMGDVKSI PEGAEVEVLG DAHSGYIVNV
0701: VREIGEEAVR VPRSISAKLK VHQVTGIRFM WENIIQSISR VKSGDKGLGC ILAHTMGLGK TFQVIAFLYT AMRCVDLGLK TALIVTPVNV LHNWRSEFEK
0801: WMPSEVKPLR IFMLGDVSRE RRFDLLTKWR KKGGVFLMGY TNFRNLSLGR GVKDLNAARG ICNALRDGPD ILVCDEAHII KNTKADTTQA LKQVKCQRRI
0901: ALTGSPLQNN LMEYYCMVDF VREGFLGSSP EFRNRFQNPI ENGQHMNSTA EDVKIMNQRS HILYEQLKGF VQRMDMNVVK KDLPPKTVFV ISVKLSPLQR
1001: ILYQRFLELY GFSDGRTDER MRKNFFAAYQ VLAQILNHPG IPQLRSEDSK NGRRGSIVDI PDDCSSDENI DYNMVTGEKQ RTMNDLQDKV DGYLQKDWWV
1101: DLLQKNNYKV SDFSGKMILL LDILSMSADV GDKALVFSQS IPTLDLIELY LSRVPRHGKQ GKFWKKGKDW YRIDGKTESS ERQKLVDRFN EPDNKRVKCT
1201: LISTRAGSLG INLYAANRVI IVDGSWNPTY DLQAIFRAWR YGQKKPVFAY RLMARGTIEE KIYKRQVTKE GLAARVVDRQ QVHRTISKEE MLHLFEFDDD
1301: DEKSEAVTEI SKQNEAGHSN LVEQAILWTK KATLSRVGGD KLMENLLQRH GPNWISSFHE HETLLQENEE ERLTKEEKDM AWEVYRRALE WEEVQRVPFS
1401: ESPVVPKPSP STQTEPLPQP KGFNRSRFVN RNCTRIAHQL TLISQGLKVG SSTVCGECGR VIRWEDVIPA SKLSAVIVN
0101: ELDLEKPLSE EEIDELISDL LAVESKAAEA QEALEKESLS KVESEVREEL AQALRGDELD EAVAAEMMTF KDEWEATLDE LETESATLLE QLDGAGIELP
0201: KLYEMIESQA PNGCYTEAWK QRAHWVGTQV TKETVESLAN AERFLHTHRP VRKRHGKLLE EGASGFLEKK LADGAVKESL AGTSELDWSS LNKVFSEKRD
0301: ESVSFGSKQW ASVYLASTPH QAAAMGLEFP GVNEVEEIEE IDASLADPFL ADAIDNEREL ALTEEQKTNY IRVKEEDDIT CDRVLQLRLK RKRRKKRSKQ
0401: VIRCAAENMD DDSVYLDGNN TTPNFAKDQV KSPETSTQVH NSEVNIEENG NFSNSDVDKM TPSTHINVDA KRDDSQNPAN NFRCTACNKV AVEVHSHPLL
0501: EVIVCMDCKR SIEDRVSKVD DSLERHCEWC GHIADLIDCR TCEKLFCASC IKRNIGEEYM SEAQSSGWDC CCCSPIPLQR LTLELEKAMR DKKSIELSSD
0601: SSSDSSSDNN SVDTDADVNV TISSKKKSKK KIRRIIDDAE LGKDTRTKIA IEKARQERLR SLQFSARYKT ISSMGDVKSI PEGAEVEVLG DAHSGYIVNV
0701: VREIGEEAVR VPRSISAKLK VHQVTGIRFM WENIIQSISR VKSGDKGLGC ILAHTMGLGK TFQVIAFLYT AMRCVDLGLK TALIVTPVNV LHNWRSEFEK
0801: WMPSEVKPLR IFMLGDVSRE RRFDLLTKWR KKGGVFLMGY TNFRNLSLGR GVKDLNAARG ICNALRDGPD ILVCDEAHII KNTKADTTQA LKQVKCQRRI
0901: ALTGSPLQNN LMEYYCMVDF VREGFLGSSP EFRNRFQNPI ENGQHMNSTA EDVKIMNQRS HILYEQLKGF VQRMDMNVVK KDLPPKTVFV ISVKLSPLQR
1001: ILYQRFLELY GFSDGRTDER MRKNFFAAYQ VLAQILNHPG IPQLRSEDSK NGRRGSIVDI PDDCSSDENI DYNMVTGEKQ RTMNDLQDKV DGYLQKDWWV
1101: DLLQKNNYKV SDFSGKMILL LDILSMSADV GDKALVFSQS IPTLDLIELY LSRVPRHGKQ GKFWKKGKDW YRIDGKTESS ERQKLVDRFN EPDNKRVKCT
1201: LISTRAGSLG INLYAANRVI IVDGSWNPTY DLQAIFRAWR YGQKKPVFAY RLMARGTIEE KIYKRQVTKE GLAARVVDRQ QVHRTISKEE MLHLFEFDDD
1301: DEKSEAVTEI SKQNEAGHSN LVEQAILWTK KATLSRVGGD KLMENLLQRH GPNWISSFHE HETLLQENEE ERLTKEEKDM AWEVYRRALE WEEVQRVPFS
1401: ESPVVPKPSP STQTEPLPQP KGFNRSRFVN RNCTRIAHQL TLISQGLKVG SSTVCGECGR VIRWEDVIPA SKLSAVIVN
Arabidopsis Description
ATRXCHR20 [Source:UniProtKB/TrEMBL;Acc:A0A178VZQ9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.