CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021841.1-P	Field mustard	cytosol	96.16	95.16
CDY23754	Canola	cytosol	94.71	92.87
CDY16534	Canola	nucleus	43.39	75.23
CDY67491	Canola	cytosol	15.08	72.15
AT2G21450.2	Thale cress	nucleus	78.17	71.81
CDX89710	Canola	nucleus	47.75	41.78
CDX77430	Canola	nucleus	23.55	26.45
CDY59589	Canola	nucleus	5.95	25.57
CDY29038	Canola	nucleus	5.95	25.57
CDX93009	Canola	nucleus	24.34	18.97
CDX94823	Canola	nucleus	23.81	18.48
CDY66441	Canola	nucleus	24.6	18.01
CDX78226	Canola	cytosol	3.84	15.68
CDX92463	Canola	nucleus	25.79	15.41
CDY56857	Canola	cytosol	25.66	15.34
CDY47279	Canola	nucleus	24.6	13.91
CDY10115	Canola	nucleus	24.34	13.34
CDX99258	Canola	nucleus	15.48	12.9
CDX92308	Canola	nucleus	15.34	12.73
CDX84469	Canola	cytosol, mitochondrion, nucleus, plastid	16.27	10.73
CDY43772	Canola	mitochondrion	16.27	10.6
CDX95047	Canola	nucleus	19.97	10.2
CDX93550	Canola	nucleus	19.84	10.05
CDX92882	Canola	nucleus	13.76	9.21
CDY51705	Canola	nucleus	13.89	9.06
CDY22674	Canola	nucleus	9.13	8.96
CDY37413	Canola	mitochondrion, nucleus	15.87	7.49
CDY32510	Canola	mitochondrion, nucleus	15.87	7.47
CDX73492	Canola	mitochondrion	13.62	4.95
CDX78225	Canola	mitochondrion	10.32	3.86
CDY06321	Canola	nucleus	1.72	2.23
CDY13196	Canola	cytosol, nucleus, plastid	0.26	0.51

Protein Annotations

MapMan:12.4.1.3.3	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	GO:A0A078HK98	UniProt:A0A078HK98	EnsemblPlants:CDY37734
ProteinID:CDY37734	ProteinID:CDY37734.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
EnsemblPlantsGene:GSBRNA2T00064636001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR038718
InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799
PANTHER:PTHR10799:SF807	SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540
UniParc:UPI0004EE679F	SEG:seg	:	:	:	:

Description

BnaA04g19340DBnaA04g19340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HK98]

Coordinates

chrLK032406:+:265612..268393

Molecular Weight (calculated)

86028.3 Da

IEP (calculated)

6.523

GRAVY (calculated)

-0.414

Length

756 amino acids

Sequence
(BLAST)

001: MVGTDQSLPF SKARNLPWIL RSESKRISQS ELTKRPDPFF LPDLLDGFEE SKYGWLADGV KRLCELKRKL LNGSVSVNLP QESVISGESS GSDLSPQGYN
101: EEDSSSIHTD DDNGTHPYGV GEEEEEAELW RQMAFAQESS KVTVENLQEN DPKQVEDCEH SFIYKDDVGE VCRVCGLIKT PIESIIEVVY YKPKRSRRTY
201: TREQEYTETT RMDFTETHSN NILGDKMFIH PRHDNEMRPH QIEGFKFLCN NLASNEPGGC ILAHAPGSGK TFLLISFLQS FMAMDPQAKP LIVLPKGIIE
301: QQLKVLREWV EERSILFLGY QQFAKIICDD SISIDDEVSE DCKRILLEKP TLLILDEGHT SRNKETNLLI SLARVKTRRK VVLTGTLFQN NVEEVFNILN
401: LVRPKFLKRH REIVSRIMSK AEIPSGKHMN QSSIENTFFA AVELTLSRES SAKASMIKDL REMTRHVLHY HKADFKGLLP GLSEFTVMLN LSSLQRDEIK
501: GLREMDLFKQ ISLGAALYIH PKIKAFLEAN PSNGEKGFAD NLLKKLDTLL KKINVKDGAK MKFFLNLIAL CESTGEKLLV FSQYIIPLKT LERLMTLTKG
601: WRLGKEMFTI TGDSSSGERE VSMERFNTSP DAKVFFGSIK ACGEGISLVG ASRVLILDVH LNPSVTQQAV ARAYRPGQKR RVYSYRLVAA DSPEEESFET
701: CSRKEMMSKM WFEWNVECGG GRRDEFGFRD VDVDQCGDVF LETTKMKEDI KSLYTR

Best Arabidopsis Sequence Match ( AT2G21450.2 )
(BLAST)

001: MVGTNQFSFS KPRETPWNLR SRSRSITQEE LAKRPDPFCL PNLLDGLEDG LYGRLADDVK RLCKLRQEYL NGSISLEDIE ARQDNKRAKS SHNLIIDSDD
101: ELPQESPLEK RLKKLKEVIV VKNGDSSGSD SSPQGYDEED SSRNSTDIDN QSLYVDAEEE EELWRKMAFA QESIKVTVED SQSNDHKQIE DCDHSFICKD
201: DIGEVCRVCG LIKKPIESMI EVVFNKQKRS RRTYMREKEN GETSRDFSGI QSSHTNILGE KMFIHPWHDQ EMRPHQTEGF RFLCNNLAAD EPGGCILAHA
301: PGSGKTFLLI SFLQSFMAMD PQARPLVVLP KGIIESWKRE FTLWEVEKIP LLDFYSVKAE SRKQQLKVLG QWIKERSILF LGYQQFTRII CDDNFEAASE
401: DCKLILLEKP TLLILDEGHT SRNKETYMLS SLARVKTRRK VVLTGTLFQN NVEEVFNILD LVRPKFLKRP GTREIVSRIM SKAEIPRGKQ VNQSSSSIEG
501: TFFAAVELTL QRSTNFSAKA SLIKDLREMT RNILHYHKAD FSGLLPGLSE FTVMLNLSSI QRDEVKGLRK MELFKQISLG AALYIHPKLK SFLEENPSNG
601: EKGFSDNNTT VMKLDKMLKK INVRDGVKMK FFLNLLALCE STGEKLLVFS QYIVPIKTLE RLMSSMKGWR LGKEMFTITG DSSNEQREWS MERFNNSLEA
701: KVFFGSIKAC GEGISLVGAS RVLILDVHLN PSVTQQAVAR AYRPGQKRKV YAYKLVAADS PEEENYETCT RKEMMSKMWF EWNVGSGRED FGFRAIDADH
801: SGDAFLETTK MKEDIKCLYT KVN

Arabidopsis Description

CHR34chromatin remodeling 34 [Source:TAIR;Acc:AT2G21450]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.