CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67491	Canola	cytosol	36.01	99.37
Bra000888.1-P	Field mustard	cytosol	93.58	88.89
CDY23754	Canola	cytosol	78.44	44.36
CDY37734	Canola	nucleus	75.23	43.39
AT2G21450.2	Thale cress	nucleus	67.43	35.72
CDX89710	Canola	nucleus	39.68	20.02
CDY29038	Canola	nucleus	6.19	15.34
CDY59589	Canola	nucleus	5.96	14.77
CDX77430	Canola	nucleus	19.5	12.63
CDX93009	Canola	nucleus	21.56	9.69
CDX94823	Canola	nucleus	21.1	9.45
CDY66441	Canola	nucleus	22.02	9.29
CDX92463	Canola	nucleus	21.1	7.27
CDY56857	Canola	cytosol	20.87	7.19
CDY47279	Canola	nucleus	21.33	6.96
CDY10115	Canola	nucleus	21.1	6.67
CDX99258	Canola	nucleus	12.16	5.84
CDX92308	Canola	nucleus	12.16	5.82
CDY43772	Canola	mitochondrion	12.84	4.83
CDX84469	Canola	cytosol, mitochondrion, nucleus, plastid	12.61	4.8
CDX95047	Canola	nucleus	16.05	4.73
CDX93550	Canola	nucleus	16.05	4.69
CDY51705	Canola	nucleus	9.17	3.45
CDX92882	Canola	nucleus	8.72	3.37
CDY37413	Canola	mitochondrion, nucleus	10.32	2.81
CDY32510	Canola	mitochondrion, nucleus	10.32	2.8
CDX78225	Canola	mitochondrion	10.78	2.33
CDX73492	Canola	mitochondrion	10.78	2.26
CDY06321	Canola	nucleus	2.06	1.55
CDY22674	Canola	nucleus	2.52	1.43
CDY13196	Canola	cytosol, nucleus, plastid	0.69	0.77
CDX78226	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.40.50.10810	MapMan:35.1	GO:A0A078FU91	UniProt:A0A078FU91	EnsemblPlants:CDY16534	ProteinID:CDY16534
ProteinID:CDY16534.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00091149001
InterPro:Helicase_ATP-bd	InterPro:IPR014001	InterPro:IPR038718	InterPro:P-loop_NTPase	PFAM:PF00176	PFscan:PS51192
PANTHER:PTHR10799	PANTHER:PTHR10799:SF807	SMART:SM00487	InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540
UniParc:UPI0004EF0CAE	SEG:seg	:	:	:	:

Description

BnaA08g02330DBnaA08g02330D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FU91]

Coordinates

chrLK032064:-:772662..775143

Molecular Weight (calculated)

50492.7 Da

IEP (calculated)

4.981

GRAVY (calculated)

-0.517

Length

436 amino acids

Sequence
(BLAST)

001: MESRRGSGRS LVSEVVSTFV YKAWILRSES KRISQSELAK RPDPFFLLDL LDWFEESKYV DLPQKSVTLC IFYVVKTEDC SGSDASPERY NEEDSSSKTP
101: TDDDNETHLN GVDEEEEAEL WRQMAFAQES SKVTVENVQD NDPKQTEDCE HSFIYKDDVG EVCRVCGLIK TPIESIIEVV YYKPKRSRRA YTREQEEDTE
201: TTRMDFTETH HSSSHPNNIL GDKMFIHPRH DNEMRPHQIE GFKFLCNNLT SEEPGGCILA HAPGSGKTFL LFSFLQSFMA MDPQAKPLIV LPKGIIESWK
301: REFTKWAVEN IPLYSVKAES RRQQLKVLRE WVEERSILFL GYQQFAKIIC DDSINIDDEV SEDCKRILLE KPTLLILDEG HTSRNKETNM LISLARVRTP
401: RKVVLTGTFV FIMADWYTPT LNNRFTLFTL NSFVRL

Best Arabidopsis Sequence Match ( AT2G21450.1 )
(BLAST)

001: MFTAWNLRSR SRSITQEELA KRPDPFCLPN LLDGLEDGLY GRLADDVKRL CKLRQEYLNG SISLEDIEAR QDNKRAKSSH NLIIDSDDEL PQESVTQINP
101: LEKRLKKLKE VIVVKNGDSS GSDSSPQGYD EEDSSRNSTD IDNQSLYVDA EEEEELWRKM AFAQESIKVT VEDSQSNDHK QIEDCDHSFI CKDDIGEVCR
201: VCGLIKKPIE SMIEVVFNKQ KRSRRTYMRE KENGETSRDF SGIQSSHTNI LGEKMFIHPW HDQEMRPHQT EGFRFLCNNL AADEPGGCIL AHAPGSGKTF
301: LLISFLQSFM AMDPQARPLV VLPKGIIESW KREFTLWEVE KIPLLDFYSV KAESRKQQLK VLGQWIKERS ILFLGYQQFT RIICDDNFEA ASEDCKLILL
401: EKPTLLILDE GHTSRNKETY MLSSLARVKT RRKVVLTGTL FQNNVEEVFN ILDLVRPKFL KRPGTREIVS RIMSKAEIPR GKQVNQSSSS IEGTFFAAVE
501: LTLQRSTNFS AKASLIKDLR EMTRNILHYH KADFSGLLPG LSEFTVMLNL SSIQRDEVKG LRKMELFKQI SLGAALYIHP KLKSFLEENP SNGEKGFSDN
601: NTTVMKLDKM LKKINVRDGV KMKFFLNLLA LCESTGEKLL VFSQYIVPIK TLERLMSSMK GWRLGKEMFT ITGDSSNEQR EWSMERFNNS LEAKVFFGSI
701: KACGEGISLV GASRVLILDV HLNPSVTQQA VARAYRPGQK RKVYAYKLVA ADSPEEENYE TCTRKEMMSK MWFEWNVGSG REDFGFRAID ADHSGDAFLE
801: TTKMKEDIKC LYTKVN

Arabidopsis Description

CHR34chromatin remodeling 34 [Source:TAIR;Acc:AT2G21450]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.