Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77430 | Canola | nucleus | 64.38 | 98.81 |
| CDY29038 | Canola | nucleus | 14.62 | 85.8 |
| CDY59589 | Canola | nucleus | 14.42 | 84.66 |
| CDX93009 | Canola | nucleus | 73.77 | 78.56 |
| CDX94823 | Canola | nucleus | 72.31 | 76.69 |
| AT3G24340.1 | Thale cress | nucleus | 64.09 | 58.48 |
| VIT_02s0012g00110.t01 | Wine grape | cytosol | 31.46 | 50.39 |
| HORVU6Hr1G061730.1 | Barley | cytosol, nucleus | 16.07 | 47.03 |
| Os05t0392400-01 | Rice | cytosol, nucleus | 19.46 | 44.67 |
| KRH39939 | Soybean | nucleus | 26.62 | 44.57 |
| GSMUA_Achr7P06840_001 | Banana | nucleus | 30.98 | 33.93 |
| Os02t0650800-00 | Rice | cytosol | 30.2 | 33.3 |
| CDY47279 | Canola | nucleus | 42.5 | 32.83 |
| KRH23851 | Soybean | mitochondrion, nucleus | 36.59 | 32.42 |
| KRH46527 | Soybean | nucleus | 35.62 | 32.06 |
| CDY10115 | Canola | nucleus | 42.01 | 31.47 |
| KRH46528 | Soybean | cytosol, extracellular, nucleus | 36.88 | 30.58 |
| TraesCS3A01G220700.1 | Wheat | nucleus | 31.17 | 30.49 |
| TraesCS3B01G251000.1 | Wheat | nucleus | 31.17 | 30.35 |
| TraesCS3A01G238800.1 | Wheat | nucleus | 30.98 | 30.27 |
| HORVU6Hr1G061720.1 | Barley | cytosol | 9.39 | 27.32 |
| CDY67491 | Canola | cytosol | 4.16 | 27.22 |
| TraesCS2D01G053900.1 | Wheat | nucleus | 28.27 | 26.89 |
| TraesCS6A01G241100.1 | Wheat | nucleus | 29.62 | 26.87 |
| HORVU3Hr1G054100.2 | Barley | nucleus | 32.62 | 26.49 |
| TraesCS3D01G231800.1 | Wheat | nucleus | 32.14 | 26.14 |
| KXG31163 | Sorghum | nucleus | 31.46 | 25.43 |
| Zm00001d051324_P001 | Maize | nucleus | 32.14 | 24.83 |
| CDY37734 | Canola | nucleus | 18.01 | 24.6 |
| CDY23754 | Canola | cytosol | 18.2 | 24.38 |
| TraesCS1D01G245400.1 | Wheat | nucleus | 34.66 | 24.11 |
| HORVU1Hr1G062970.3 | Barley | mitochondrion | 34.56 | 24.09 |
| TraesCS1B01G256700.1 | Wheat | mitochondrion, nucleus | 34.75 | 24.05 |
| TraesCS1A01G245700.1 | Wheat | mitochondrion, nucleus | 34.66 | 24.04 |
| Zm00001d038113_P001 | Maize | mitochondrion, nucleus | 33.01 | 23.76 |
| OQU77943 | Sorghum | mitochondrion | 33.3 | 23.59 |
| CDX89710 | Canola | nucleus | 18.68 | 22.34 |
| CDY16534 | Canola | nucleus | 9.29 | 22.02 |
| CDX78226 | Canola | cytosol | 3.58 | 20.0 |
| CDY56857 | Canola | cytosol | 23.91 | 19.53 |
| CDX92463 | Canola | nucleus | 23.62 | 19.29 |
| CDX92308 | Canola | nucleus | 12.49 | 14.16 |
| CDX99258 | Canola | nucleus | 12.39 | 14.11 |
| CDX92882 | Canola | nucleus | 13.07 | 11.96 |
| CDY51705 | Canola | nucleus | 13.36 | 11.91 |
| CDX84469 | Canola | cytosol, mitochondrion, nucleus, plastid | 13.17 | 11.87 |
| CDY43772 | Canola | mitochondrion | 12.78 | 11.38 |
| CDX95047 | Canola | nucleus | 14.81 | 10.34 |
| CDX93550 | Canola | nucleus | 14.81 | 10.25 |
| CDY22674 | Canola | nucleus | 6.78 | 9.09 |
| CDY37413 | Canola | mitochondrion, nucleus | 11.91 | 7.68 |
| CDY32510 | Canola | mitochondrion, nucleus | 11.71 | 7.53 |
| CDX73492 | Canola | mitochondrion | 13.07 | 6.49 |
| CDX78225 | Canola | mitochondrion | 9.68 | 4.95 |
| HORVU3Hr1G014620.1 | Barley | nucleus | 0.29 | 2.78 |
| CDY06321 | Canola | nucleus | 1.06 | 1.89 |
| CDY13196 | Canola | cytosol, nucleus, plastid | 0.68 | 1.79 |
| Os02t0762600-01 | Rice | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:16.10.1.2 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | GO:A0A078JKX2 | UniProt:A0A078JKX2 | EnsemblPlants:CDY66441 |
| ProteinID:CDY66441 | ProteinID:CDY66441.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 |
| EnsemblPlantsGene:GSBRNA2T00053627001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR038718 |
| InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 |
| PANTHER:PTHR10799:SF858 | SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 |
| UniParc:UPI0004EF20D8 | SEG:seg | : | : | : | : |
Description
BnaCnng50860DBnaCnng50860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JKX2]
Coordinates
chrLK035265:+:12393..15668
Molecular Weight (calculated)
118213.0 Da
IEP (calculated)
5.436
GRAVY (calculated)
-0.766
Length
1033 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDMTTCVGRR TRSRTESYLN SLLNKSKGIS VENQSRSRIE RRKKRDSLRD SVSPAKPKRR REKKRKDDDD VEFVETIYPK GKQDDDNVGS SPVIAPSLES
0101: KSPVVDVNSI DEEKTPDDDD CSVDCDMDVD DGDLRGEEKV SEADEVVSLS SSSEEEGSVE EVCGEDDYSD EEEDVESDSS DYMEESSDST YTGSSDSGFD
0201: CSDDDDEVGG DARNTSKVKN KSPSERVYKR EKPKNYYKKN DLDVFRLLAK SVWDRTKIFD QEICSGEDED TAEFDTREDP IVRDSSGEYP IVRERKRRRY
0301: HREKKKKHLN VTDQQGDSFC EEGGKPWLST HVNLRFGCEE EPEPIEKTEE EKEIDRLWED MALALSLEGV RSSAHSRSGD VSCSNGKHDF VLDEEVGLKC
0401: RYCSYVSVEI RDVSPTMDKY RANINDKKTC SDKKGNPLLD SLDFEASDRS RDMESLKNTQ GTVWEYIPGI KNTLYPHQQE GFEFMWNNLA GTTKLDELKS
0501: SVGKESGGCI ISHSPGTGKT RLTIVFLQSY LEQFPESHPV VIAPASLMLT WEEEFKKWNS NIPFYNMSSQ DFSGQENQSA VSLLKGNRHL RRNKDSVRMV
0601: KLYSWRNKKS ILGISYNLYE KLAGNRCAGE VQEFRKMLLE LPGLLVLDEG HTPRNHNSCI WKVLTEVKTE KRIILSGTPF QNNFKELSNV LCLTRPAYAD
0701: KISSRLQDLT RLSQEGKNGR FDEEVGISEL KDMIAPFVHV HKGNILRESL PGLRDCVVML NPPFQQEKIL KRIDHSQNTF ELEHKLSAVS VHPSLYMCCK
0801: QTNKEQLTIG PVALKVLESL RLDSKEGAKT RFLIDFIRFS QTVNEKVLVF SQYIDTLELI RDQLNAVFGW TEGEEILYMH GQLKQTIRQH LINNFNRPDS
0901: KSKVLLASTG ACSEGIHLVG ASRVVLLDVV WNPSVERQAI SRAYRIGQKR VVYTYHLMVK GTTEWGKYCK QTKKHRISEM VFSPTNEKDK LIENEVVSED
1001: KILDEMVRHE KLKDMFGKVL YRKKESDMFT DIL
0101: KSPVVDVNSI DEEKTPDDDD CSVDCDMDVD DGDLRGEEKV SEADEVVSLS SSSEEEGSVE EVCGEDDYSD EEEDVESDSS DYMEESSDST YTGSSDSGFD
0201: CSDDDDEVGG DARNTSKVKN KSPSERVYKR EKPKNYYKKN DLDVFRLLAK SVWDRTKIFD QEICSGEDED TAEFDTREDP IVRDSSGEYP IVRERKRRRY
0301: HREKKKKHLN VTDQQGDSFC EEGGKPWLST HVNLRFGCEE EPEPIEKTEE EKEIDRLWED MALALSLEGV RSSAHSRSGD VSCSNGKHDF VLDEEVGLKC
0401: RYCSYVSVEI RDVSPTMDKY RANINDKKTC SDKKGNPLLD SLDFEASDRS RDMESLKNTQ GTVWEYIPGI KNTLYPHQQE GFEFMWNNLA GTTKLDELKS
0501: SVGKESGGCI ISHSPGTGKT RLTIVFLQSY LEQFPESHPV VIAPASLMLT WEEEFKKWNS NIPFYNMSSQ DFSGQENQSA VSLLKGNRHL RRNKDSVRMV
0601: KLYSWRNKKS ILGISYNLYE KLAGNRCAGE VQEFRKMLLE LPGLLVLDEG HTPRNHNSCI WKVLTEVKTE KRIILSGTPF QNNFKELSNV LCLTRPAYAD
0701: KISSRLQDLT RLSQEGKNGR FDEEVGISEL KDMIAPFVHV HKGNILRESL PGLRDCVVML NPPFQQEKIL KRIDHSQNTF ELEHKLSAVS VHPSLYMCCK
0801: QTNKEQLTIG PVALKVLESL RLDSKEGAKT RFLIDFIRFS QTVNEKVLVF SQYIDTLELI RDQLNAVFGW TEGEEILYMH GQLKQTIRQH LINNFNRPDS
0901: KSKVLLASTG ACSEGIHLVG ASRVVLLDVV WNPSVERQAI SRAYRIGQKR VVYTYHLMVK GTTEWGKYCK QTKKHRISEM VFSPTNEKDK LIENEVVSED
1001: KILDEMVRHE KLKDMFGKVL YRKKESDMFT DIL
0001: MDMTSCVARR TRSRTESYLN SILNKSKGIS GEEEDQSLGC VNSRTEKRRV NMRDACSPSP RKKKRRRRKD DDDDVVFVRT EYPEGKRDDE NVGSTSGNLQ
0101: SKSFDFGDRV CDFDADDRNL GCEEKASNFN PIDDDDDVVF VGTVQRENDH VEDDDNVGSA SVISPRVCDF DEDDAKVSGK ENPLSPDDDD DVVFLGTIAG
0201: ENQHVEDVNA GSEVCDILLD DANLRGEEKT YVSDEVVSLS SSSDDEEDPL EELGTDSREE VSGEDRDSGE SDMDEDANDS DSSDYVGESS DSSDVESSDS
0301: DFVCSEDEEG GTRDDATCEK NPSEKVYHHK KSRTFRRKHN FDVINLLAKS MLESKDVFKE DIFSWDKIAE VDSREDPVVR ESSSEKVNEH GKPRERRSFH
0401: RVREKNHLNG ESFYGGEKLC DGEETINYST EDSPPLNLRF GCEEPVLIEK TEEEKELDSL WEDMNVALTL EGMHSSTPDK NGDMLCSKGT HDFVLDDEIG
0501: LKCVHCAYVA VEIKDISPAM DKYRPSVNDN KKCSDRKGDP LPNRLEFDAS DPSSFVAPLD NIEGTVWQYV PGIKDTLYPH QQEGFEFIWK NLAGTTKINE
0601: LNSVGVKGSG GCIISHKAGT GKTRLTVVFL QSYLKRFPNS HPMVIAPATL MRTWEDEVRK WNVNIPFYNM NSLQLSGYED AEAVSRLEGN RHHNSIRMVK
0701: LVSWWKQKSI LGISYPLYEK LAANKNTEGM QVFRRMLVEL PGLLVLDEGH TPRNQSSLIW KVLTEVRTEK RIFLSGTLFQ NNFKELSNVL CLARPADKDT
0801: ISSRIHELSK CSQEGEHGRV NEENRIVDLK AMIAHFVHVH EGTILQESLP GLRDCVVVLN PPFQQKKILD RIDTSQNTFE FEHKLSAVSV HPSLYLCCNP
0901: TKKEDLVIGP ATLGTLKRLR LKYEEGVKTK FLIDFIRISG TVKEKVLVYS QYIDTLKLIM EQLIAECDWT EGEQILLMHG KVEQRDRQHM IDNFNKPDSG
1001: SKVLLASTKA CSEGISLVGA SRVVILDVVW NPSVESQAIS RAFRIGQKRA VFIYHLMVKD TSEWNKYCKQ SEKHRISELV FSSTNEKDKP INNEVVSKDR
1101: ILDEMVRHEK LKHIFEKILY HPKKSDMNTS FF
0101: SKSFDFGDRV CDFDADDRNL GCEEKASNFN PIDDDDDVVF VGTVQRENDH VEDDDNVGSA SVISPRVCDF DEDDAKVSGK ENPLSPDDDD DVVFLGTIAG
0201: ENQHVEDVNA GSEVCDILLD DANLRGEEKT YVSDEVVSLS SSSDDEEDPL EELGTDSREE VSGEDRDSGE SDMDEDANDS DSSDYVGESS DSSDVESSDS
0301: DFVCSEDEEG GTRDDATCEK NPSEKVYHHK KSRTFRRKHN FDVINLLAKS MLESKDVFKE DIFSWDKIAE VDSREDPVVR ESSSEKVNEH GKPRERRSFH
0401: RVREKNHLNG ESFYGGEKLC DGEETINYST EDSPPLNLRF GCEEPVLIEK TEEEKELDSL WEDMNVALTL EGMHSSTPDK NGDMLCSKGT HDFVLDDEIG
0501: LKCVHCAYVA VEIKDISPAM DKYRPSVNDN KKCSDRKGDP LPNRLEFDAS DPSSFVAPLD NIEGTVWQYV PGIKDTLYPH QQEGFEFIWK NLAGTTKINE
0601: LNSVGVKGSG GCIISHKAGT GKTRLTVVFL QSYLKRFPNS HPMVIAPATL MRTWEDEVRK WNVNIPFYNM NSLQLSGYED AEAVSRLEGN RHHNSIRMVK
0701: LVSWWKQKSI LGISYPLYEK LAANKNTEGM QVFRRMLVEL PGLLVLDEGH TPRNQSSLIW KVLTEVRTEK RIFLSGTLFQ NNFKELSNVL CLARPADKDT
0801: ISSRIHELSK CSQEGEHGRV NEENRIVDLK AMIAHFVHVH EGTILQESLP GLRDCVVVLN PPFQQKKILD RIDTSQNTFE FEHKLSAVSV HPSLYLCCNP
0901: TKKEDLVIGP ATLGTLKRLR LKYEEGVKTK FLIDFIRISG TVKEKVLVYS QYIDTLKLIM EQLIAECDWT EGEQILLMHG KVEQRDRQHM IDNFNKPDSG
1001: SKVLLASTKA CSEGISLVGA SRVVILDVVW NPSVESQAIS RAFRIGQKRA VFIYHLMVKD TSEWNKYCKQ SEKHRISELV FSSTNEKDKP INNEVVSKDR
1101: ILDEMVRHEK LKHIFEKILY HPKKSDMNTS FF
Arabidopsis Description
CLSY4SNF2 domain-containing protein CLASSY 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK10]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.