Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400076122 | Potato | cytosol, nucleus, plastid | 85.41 | 21.76 |
| Solyc08g074500.2.1 | Tomato | cytosol, nucleus, plastid | 85.41 | 12.46 |
| CDX73492 | Canola | mitochondrion | 99.46 | 8.84 |
| AT3G54280.2 | Thale cress | mitochondrion | 96.22 | 8.36 |
| GSMUA_Achr4P27500_001 | Banana | mitochondrion | 78.92 | 7.12 |
| KXG22701 | Sorghum | mitochondrion | 78.38 | 7.08 |
| Zm00001d039160_P031 | Maize | cytosol, mitochondrion, nucleus, plasma membrane | 77.84 | 7.05 |
| TraesCS1D01G450200.1 | Wheat | mitochondrion | 75.68 | 6.77 |
| TraesCS1B01G476500.1 | Wheat | mitochondrion | 75.68 | 6.77 |
| TraesCS1A01G442400.2 | Wheat | mitochondrion | 75.68 | 6.77 |
| HORVU1Hr1G094870.2 | Barley | mitochondrion | 75.68 | 6.77 |
| CDY22674 | Canola | nucleus | 25.41 | 6.1 |
| CDX99258 | Canola | nucleus | 28.65 | 5.84 |
| CDX92308 | Canola | nucleus | 28.65 | 5.82 |
| CDX77430 | Canola | nucleus | 20.0 | 5.5 |
| CDX92882 | Canola | nucleus | 30.27 | 4.96 |
| CDY51705 | Canola | nucleus | 30.27 | 4.83 |
| CDX84469 | Canola | cytosol, mitochondrion, nucleus, plastid | 27.57 | 4.45 |
| CDY43772 | Canola | mitochondrion | 27.57 | 4.4 |
| CDX93009 | Canola | nucleus | 21.08 | 4.02 |
| CDY37734 | Canola | nucleus | 15.68 | 3.84 |
| CDX94823 | Canola | nucleus | 20.0 | 3.8 |
| CDY23754 | Canola | cytosol | 15.68 | 3.76 |
| CDY32510 | Canola | mitochondrion, nucleus | 31.89 | 3.67 |
| CDY37413 | Canola | mitochondrion, nucleus | 31.35 | 3.62 |
| CDY66441 | Canola | nucleus | 20.0 | 3.58 |
| CDX89710 | Canola | nucleus | 15.68 | 3.36 |
| CDX93550 | Canola | nucleus | 27.03 | 3.35 |
| CDX95047 | Canola | nucleus | 26.49 | 3.31 |
| CDY56857 | Canola | cytosol | 19.46 | 2.85 |
| CDX92463 | Canola | nucleus | 19.46 | 2.85 |
| CDY47279 | Canola | nucleus | 20.0 | 2.77 |
| CDY10115 | Canola | nucleus | 20.0 | 2.68 |
| CDY06321 | Canola | nucleus | 2.7 | 0.86 |
| CDX78225 | Canola | mitochondrion | 4.32 | 0.4 |
| CDY59589 | Canola | nucleus | 0.0 | 0.0 |
| KXG34530 | Sorghum | endoplasmic reticulum, golgi, plasma membrane | 0.0 | 0.0 |
| CDY67491 | Canola | cytosol | 0.0 | 0.0 |
| CDY13196 | Canola | cytosol, nucleus, plastid | 0.0 | 0.0 |
| CDY29038 | Canola | nucleus | 0.0 | 0.0 |
| CDY16534 | Canola | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX78226 | EnsemblPlantsGene:GSBRNA2T00129548001 | Gene3D:3.40.50.300 | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:P-loop_NTPase |
| PANTHER:PTHR10799 | PANTHER:PTHR10799:SF814 | PFAM:PF00271 | PFscan:PS51194 | ProteinID:CDX78226 | ProteinID:CDX78226.1 |
| SEG:seg | SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI0004EF44B4 | MapMan:35.1 | : |
Description
BnaA09g34210D
Coordinates
chrLK031814:+:1857583..1858795
Molecular Weight (calculated)
20564.6 Da
IEP (calculated)
6.690
GRAVY (calculated)
-0.436
Length
185 amino acids
Sequence
(BLAST)
(BLAST)
001: MRLDGSVVPE KRFEIVKAFN SDPTIDVLLL TTHVGGLGLN LTSADTIVFM EHDWNPMRDH QAMDRAHRLG QKRVVNVHRL IMRGTLEEKV MSLQRFKVSV
101: ANTVINAENA SMKTMNTDQL LDLFASAETS KKGGASSKKG SEDNDQTAGT GKGIKAILGN LEELWDQSQY TEEYNLNQFL AKLNG
101: ANTVINAENA SMKTMNTDQL LDLFASAETS KKGGASSKKG SEDNDQTAGT GKGIKAILGN LEELWDQSQY TEEYNLNQFL AKLNG
0001: MAQQQSSRLN RLLTLLDTGS TQATRLTAAK QIGDIAKSHP QDLSSLLRKV LHHLRSKKWD TRVAAAHAIG AIVLNVKHPS LSELLNSLAT KLGEAGISDN
0101: VDEVVAFRNL QSKILANAPF RSFEMNKVLE FGALLASGGQ EYDILNDNSK NPRDRVARQK KNLRRRLGLD MCEQFMDVNE MIRDEDLIEQ KSNVPANGVG
0201: NRLYANCSPH HIQQFVSRMV PRVNSRRPSA RELNLLKRKA KISSKDQAKG SCEVADVEMS SSHVASTSKR ILSDSLDSSK ADIGNEDDIE PDGDGKWPFH
0301: SFVEQLILDM FDPAWEIRHG SVMALREILM LHGGSAGVST EEFSSDNGFE LKDVLNKVTR EREIDLNMQV SENELEPLRK RPKIEDPSKS FIDNTVLEVI
0401: GGDYDINVKD EDAEFLLPPV KVNGQTDCSS TKLEPQSSMD DSTSHSEINH VAEVNNHFED KSFIEEPVIP KQQEENLEVL DLVKQARHSW IKNFEFLQDC
0501: TIRFLCVLSL DRFGDYISDQ VVAPVREACA QALGATFKYM NPSLIYETLN ILLQMQRRPE WEIRHGSLLG IKYLVAVRQE MLQDLLGYIL PACKAGLEDS
0601: DDDVRAVAAD ALIPAAAAIV SLRGQTLLSI VMLLWDILLE LDDLSPSTSS IMNLLAEIYS QDDMTLVMHE ELSLGEEQNI ELNEMGHIES IGERRDVKES
0701: PYALSGLAPR LWPFTRHDIT SVRFSAIRTL ERLLEAGCRK NISGQSKSSF WPSSILGDTL RIVFQNLLLE STEEILECSE RVWRLLVQCP VDDLEDTAKF
0801: YMASWIELAA TPYGSTLDAT KMFWPVAPPR KSHFKAAAKM KAVKLENEAS SILGFDYARS SASLEKQEDA SARSTKIIVG SDMEMSVTRT RVVTASALGI
0901: FASRLREGSM QFVVDPLSST LTSMSGVQRQ VGSIVLISWF RETKCKAPSD GSGSLPGFPS PLKKWLLDLL ACADPAFPTK DIFLPYAELS RTYTKMRNEA
1001: SQLLHTVETC HCFDKLLSTN KLNVESVTAD ETIDFASTLD LWNKESAGNE SLEKQVFEDV ESSRQQLLST AGYLKCVQSN LHITVTSLVA AAVVWMSEFP
1101: ARLNPIILPL MASIKREQEQ ILQQIAAEAL AELIAYCVDR KPSPNDKLIK NICSLTCMDP SETPQASIIS SMDIVDDMDF LSSRSNTGKQ KAKVVLASGE
1201: DRSKVEGFIT RRGSELALKH LSLKFGGSLF DKLPKLWECL TEVLVPEIPS DQQKIDLKIE SISDPQVLIN NIQVVRSIAP VMEETLKPRL LSLLPCIFKC
1301: VRHSHVAVRL AASRCVMTMA KSMTTDVMAA VVESAIPMLG DLTCISGRQG AGMLIGLLVQ GLGVELVPYS PLLVVPLLRC MSDVDSSVRQ SVTRSFAALV
1401: PMLPLARGVP PPVGLSKDLS SNAEDAKFLE QLLDNSHIDD YKLCTELKVQ LRRYQQEGIN WLGFLKRFKL HGILCDDMGL GKTLQASAIV ASDAAERRGS
1501: TDELDVFPSI IVCPSTLVGH WAFEIEKYID LSLLSVLQYV GSAQDRVSLR EQFNNHNVII TSYDVVRKDV DYLTQFSWNY CILDEGHIIK NAKSKITAAV
1601: KQLKAQHRLI LSGTPIQNNI MELWSLFDFL MPGFLGTERQ FQASYGKPLL AARDPKCSAK DAEAGVLAME ALHKQVMPFL LRRTKEEVLS DLPEKIIQDR
1701: YCDLSPVQLK LYEQFSGSSA KQEISSIIKV DGSADSGNAD VAPTKASTHV FQALQYLLKL CSHPLLVLGD KVTEPVASDL AAMINGCSDI ITELHKVQHS
1801: PKLVALQEIL EECGIGSDAS SSDGTLSVGQ HRVLIFAQHK ALLDIIEKDL FQAHMKSVTY MRLDGSVVPE KRFEIVKAFN SDPTIDVLLL TTHVGGLGLN
1901: LTSADTLVFM EHDWNPMRDH QAMDRAHRLG QKRVVNVHRL IMRGTLEEKV MSLQKFKVSV ANTVINAENA SMKTMNTDQL LDLFASAETS KKGGGSSKKG
2001: SEDNDQIAGT GKGMKAILGN LEELWDQSQY TEEYNLSQFL TKLNG
0101: VDEVVAFRNL QSKILANAPF RSFEMNKVLE FGALLASGGQ EYDILNDNSK NPRDRVARQK KNLRRRLGLD MCEQFMDVNE MIRDEDLIEQ KSNVPANGVG
0201: NRLYANCSPH HIQQFVSRMV PRVNSRRPSA RELNLLKRKA KISSKDQAKG SCEVADVEMS SSHVASTSKR ILSDSLDSSK ADIGNEDDIE PDGDGKWPFH
0301: SFVEQLILDM FDPAWEIRHG SVMALREILM LHGGSAGVST EEFSSDNGFE LKDVLNKVTR EREIDLNMQV SENELEPLRK RPKIEDPSKS FIDNTVLEVI
0401: GGDYDINVKD EDAEFLLPPV KVNGQTDCSS TKLEPQSSMD DSTSHSEINH VAEVNNHFED KSFIEEPVIP KQQEENLEVL DLVKQARHSW IKNFEFLQDC
0501: TIRFLCVLSL DRFGDYISDQ VVAPVREACA QALGATFKYM NPSLIYETLN ILLQMQRRPE WEIRHGSLLG IKYLVAVRQE MLQDLLGYIL PACKAGLEDS
0601: DDDVRAVAAD ALIPAAAAIV SLRGQTLLSI VMLLWDILLE LDDLSPSTSS IMNLLAEIYS QDDMTLVMHE ELSLGEEQNI ELNEMGHIES IGERRDVKES
0701: PYALSGLAPR LWPFTRHDIT SVRFSAIRTL ERLLEAGCRK NISGQSKSSF WPSSILGDTL RIVFQNLLLE STEEILECSE RVWRLLVQCP VDDLEDTAKF
0801: YMASWIELAA TPYGSTLDAT KMFWPVAPPR KSHFKAAAKM KAVKLENEAS SILGFDYARS SASLEKQEDA SARSTKIIVG SDMEMSVTRT RVVTASALGI
0901: FASRLREGSM QFVVDPLSST LTSMSGVQRQ VGSIVLISWF RETKCKAPSD GSGSLPGFPS PLKKWLLDLL ACADPAFPTK DIFLPYAELS RTYTKMRNEA
1001: SQLLHTVETC HCFDKLLSTN KLNVESVTAD ETIDFASTLD LWNKESAGNE SLEKQVFEDV ESSRQQLLST AGYLKCVQSN LHITVTSLVA AAVVWMSEFP
1101: ARLNPIILPL MASIKREQEQ ILQQIAAEAL AELIAYCVDR KPSPNDKLIK NICSLTCMDP SETPQASIIS SMDIVDDMDF LSSRSNTGKQ KAKVVLASGE
1201: DRSKVEGFIT RRGSELALKH LSLKFGGSLF DKLPKLWECL TEVLVPEIPS DQQKIDLKIE SISDPQVLIN NIQVVRSIAP VMEETLKPRL LSLLPCIFKC
1301: VRHSHVAVRL AASRCVMTMA KSMTTDVMAA VVESAIPMLG DLTCISGRQG AGMLIGLLVQ GLGVELVPYS PLLVVPLLRC MSDVDSSVRQ SVTRSFAALV
1401: PMLPLARGVP PPVGLSKDLS SNAEDAKFLE QLLDNSHIDD YKLCTELKVQ LRRYQQEGIN WLGFLKRFKL HGILCDDMGL GKTLQASAIV ASDAAERRGS
1501: TDELDVFPSI IVCPSTLVGH WAFEIEKYID LSLLSVLQYV GSAQDRVSLR EQFNNHNVII TSYDVVRKDV DYLTQFSWNY CILDEGHIIK NAKSKITAAV
1601: KQLKAQHRLI LSGTPIQNNI MELWSLFDFL MPGFLGTERQ FQASYGKPLL AARDPKCSAK DAEAGVLAME ALHKQVMPFL LRRTKEEVLS DLPEKIIQDR
1701: YCDLSPVQLK LYEQFSGSSA KQEISSIIKV DGSADSGNAD VAPTKASTHV FQALQYLLKL CSHPLLVLGD KVTEPVASDL AAMINGCSDI ITELHKVQHS
1801: PKLVALQEIL EECGIGSDAS SSDGTLSVGQ HRVLIFAQHK ALLDIIEKDL FQAHMKSVTY MRLDGSVVPE KRFEIVKAFN SDPTIDVLLL TTHVGGLGLN
1901: LTSADTLVFM EHDWNPMRDH QAMDRAHRLG QKRVVNVHRL IMRGTLEEKV MSLQKFKVSV ANTVINAENA SMKTMNTDQL LDLFASAETS KKGGGSSKKG
2001: SEDNDQIAGT GKGMKAILGN LEELWDQSQY TEEYNLSQFL TKLNG
Arabidopsis Description
RGD3ROOT GROWTH DEFECTIVE 3 [Source:UniProtKB/TrEMBL;Acc:F4JCU6]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.