Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 4
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78226 | Canola | cytosol | 8.36 | 96.22 |
| Bra007061.1-P | Field mustard | mitochondrion | 88.02 | 91.5 |
| CDX73492 | Canola | mitochondrion | 87.88 | 89.91 |
| PGSC0003DMT400076122 | Potato | cytosol, nucleus, plastid | 27.05 | 79.34 |
| KXG34530 | Sorghum | endoplasmic reticulum, golgi, plasma membrane | 6.01 | 73.14 |
| Solyc08g074500.2.1 | Tomato | cytosol, nucleus, plastid | 42.84 | 71.92 |
| VIT_15s0024g00350.t01 | Wine grape | mitochondrion | 66.6 | 70.13 |
| KRH23760 | Soybean | mitochondrion | 66.37 | 69.03 |
| KRH40039 | Soybean | mitochondrion | 65.71 | 68.34 |
| GSMUA_Achr4P27500_001 | Banana | mitochondrion | 60.69 | 62.96 |
| Zm00001d039160_P031 | Maize | cytosol, mitochondrion, nucleus, plasma membrane | 58.62 | 61.06 |
| KXG22701 | Sorghum | mitochondrion | 58.71 | 61.04 |
| HORVU1Hr1G094870.2 | Barley | mitochondrion | 58.29 | 59.98 |
| TraesCS1D01G450200.1 | Wheat | mitochondrion | 58.15 | 59.84 |
| TraesCS1A01G442400.2 | Wheat | mitochondrion | 58.15 | 59.84 |
| TraesCS1B01G476500.1 | Wheat | mitochondrion | 58.1 | 59.79 |
| AT1G03750.1 | Thale cress | plastid | 8.45 | 20.88 |
| AT3G19210.1 | Thale cress | nucleus | 8.55 | 20.0 |
| AT5G63950.1 | Thale cress | cytosol | 10.05 | 19.63 |
| AT2G18760.3 | Thale cress | nucleus | 10.85 | 18.54 |
| AT1G08600.3 | Thale cress | nucleus | 10.24 | 14.74 |
| AT3G32330.1 | Thale cress | cytosol | 2.21 | 14.37 |
| AT2G21450.2 | Thale cress | nucleus | 5.31 | 13.73 |
| AT2G16390.2 | Thale cress | nucleus | 5.64 | 13.47 |
| AT3G42670.4 | Thale cress | nucleus | 7.0 | 11.84 |
| AT5G20420.1 | Thale cress | cytosol | 6.95 | 11.74 |
| AT1G05490.1 | Thale cress | mitochondrion, nucleus | 7.47 | 11.28 |
| AT3G24340.1 | Thale cress | nucleus | 5.92 | 11.13 |
| AT3G31900.1 | Thale cress | cytosol | 1.78 | 9.67 |
| AT3G32280.1 | Thale cress | endoplasmic reticulum, plasma membrane | 1.88 | 8.44 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:12.4.1.4.2 | MapMan:15.3.5.7.2 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | EntrezGene:824595 |
| ProteinID:AEE79208.1 | InterPro:ARM-like | InterPro:ARM-type_fold | ArrayExpress:AT3G54280 | EnsemblPlantsGene:AT3G54280 | RefSeq:AT3G54280 |
| TAIR:AT3G54280 | RefSeq:AT3G54280-TAIR-G | EnsemblPlants:AT3G54280.2 | TAIR:AT3G54280.2 | Unigene:At.35125 | Symbol:CHR16 |
| InterPro:DUF3535 | UniProt:F4JCU6 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR011989 | InterPro:IPR014001 | InterPro:IPR038718 |
| RefSeq:NP_001190085.1 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFAM:PF12054 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR36498 | Symbol:RGD3 | SMART:SM00487 |
| SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF48371 | SUPFAM:SSF52540 | UniParc:UPI0001E92E17 |
| SEG:seg | : | : | : | : | : |
Description
RGD3ROOT GROWTH DEFECTIVE 3 [Source:UniProtKB/TrEMBL;Acc:F4JCU6]
Coordinates
chr3:+:20091976..20104257
Molecular Weight (calculated)
236604.0 Da
IEP (calculated)
5.524
GRAVY (calculated)
-0.133
Length
2129 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAQQQSSRLN RLLTLLDTGS TQATRLTAAK QIGDIAKSHP QDLSSLLRKV LHHLRSKKWD TRVAAAHAIG AIVLNVKHPS LSELLNSLAT KLGEAGISDN
0101: VDEVVAFRNL QSKILANAPF RSFEMNKVLE FGALLASGGQ AFITKNILCQ LQPVKLFPTV SLFDLKKFYG LEYDILNDNS KNPRDRVARQ KKNLRRRLGL
0201: DMCEQFMDVN EMIRDEDLIE QKSNVPANGV GNRLYANCSP HHIQQFVSRM VPRVNSRRPS ARELNLLKRK AKISSKDQAK GSCEVADVEM SSSHVASTSK
0301: RILSDSLDSS KADIGNEDDI EPDGDGKWPF HSFVEQLILD MFDPAWEIRH GSVMALREIL MLHGGSAGVS TEEFSSDNGF ELKDVLNKVT REREIDLNMQ
0401: VSENELEPLR KRPKIEDPSK SFIDNTVLEV IGGDYDINVK DEDAEFLLPP VKVNGQTDCS STKLEPQSSM DDSTSHSEIN HVAEVNNHFE DKSFIEEPVI
0501: PKQQEENLEV LDLVKQARHS WIKNFEFLQD CTIRFLCVLS LDRFGDYISD QVVAPVREAC AQALGATFKY MNPSLIYETL NILLQMQRRP EWEIRHGSLL
0601: GIKYLVAVRQ EMLQDLLGYI LPACKAGLED SDDDVRAVAA DALIPAAAAI VSLRGQTLLS IVMLLWDILL ELDDLSPSTS SIMNLLAEIY SQDDMTLVMH
0701: EELSLGEEQN IELNEMGHIE SIGERRDVKE SPYALSGLAP RLWPFTRHDI TSVRFSAIRT LERLLEAGCR KNISGQSKSS FWPSSILGDT LRIVFQNLLL
0801: ESTEEILECS ERVWRLLVQC PVDDLEDTAK FYMASWIELA ATPYGSTLDA TKMFWPVAPP RKSHFKAAAK MKAVKLENEA SSILGFDYAR SSASLEKQED
0901: ASARSTKIIV GSDMEMSVTR TRVVTASALG IFASRLREGS MQFVVDPLSS TLTSMSGVQR QVGSIVLISW FRETKCKAPS DGSGSLPGFP SPLKKWLLDL
1001: LACADPAFPT KDIFLPYAEL SRTYTKMRNE ASQLLHTVET CHCFDKLLST NKLNVESVTA DETIDFASTL DLWNKESAGN ESLEKQVFED VESSRQQLLS
1101: TAGYLKCVQS NLHITVTSLV AAAVVWMSEF PARLNPIILP LMASIKREQE QILQQIAAEA LAELIAYCVD RKPSPNDKLI KNICSLTCMD PSETPQASII
1201: SSMDIVDDMD FLSSRSNTGK QKAKVVLASG EDRSKVEGFI TRRGSELALK HLSLKFGGSL FDKLPKLWEC LTEVLVPEIP SDQQKIDLKI ESISDPQVLI
1301: NNIQVVRSIA PVMEETLKPR LLSLLPCIFK CVRHSHVAVR LAASRCVMTM AKSMTTDVMA AVVESAIPML GDLTCISGRQ GAGMLIGLLV QGLGVELVPY
1401: SPLLVVPLLR CMSDVDSSVR QSVTRSFAAL VPMLPLARGV PPPVGLSKDL SSNAEDAKFL EQLLDNSHID DYKLCTELKV QLRRYQQEGI NWLGFLKRFK
1501: LHGILCDDMG LGKTLQASAI VASDAAERRG STDELDVFPS IIVCPSTLVG HWAFEIEKYI DLSLLSVLQY VGSAQDRVSL REQFNNHNVI ITSYDVVRKD
1601: VDYLTQFSWN YCILDEGHII KNAKSKITAA VKQLKAQHRL ILSGTPIQNN IMELWSLFDF LMPGFLGTER QFQASYGKPL LAARDPKCSA KDAEAGVLAM
1701: EALHKQVMPF LLRRTKEEVL SDLPEKIIQD RYCDLSPVQL KLYEQFSGSS AKQEISSIIK VDGSADSGNA DVAPTKASTH VFQALQYLLK LCSHPLLVLG
1801: DKVTEPVASD LAAMINGCSD IITELHKVQH SPKLVALQEI LEECGIGSDA SSSDGTLSVG QHRVLIFAQH KALLDIIEKD LFQAHMKSVT YMRLDGSVVP
1901: EKRFEIVKAF NSDPTIDVLL LTTHVGGLGL NLTSADTLVF MEHDWNPMRD HQAMDRAHRL GQKRVVNVHR LIMRGTLEEK VMSLQKFKVS VANTVINAEN
2001: ASMKTMNTDQ LLDLFASAET SKKGGGSSKK GSEDNDQIAG TGKGMKAILG NLEELWDQSQ YTEEYNLSQF LTKLNGGENE KREVDDIGVV SFGNTTGLMF
2101: VTAEVVFVVD SESCKYAFNQ LFLFCFSFF
0101: VDEVVAFRNL QSKILANAPF RSFEMNKVLE FGALLASGGQ AFITKNILCQ LQPVKLFPTV SLFDLKKFYG LEYDILNDNS KNPRDRVARQ KKNLRRRLGL
0201: DMCEQFMDVN EMIRDEDLIE QKSNVPANGV GNRLYANCSP HHIQQFVSRM VPRVNSRRPS ARELNLLKRK AKISSKDQAK GSCEVADVEM SSSHVASTSK
0301: RILSDSLDSS KADIGNEDDI EPDGDGKWPF HSFVEQLILD MFDPAWEIRH GSVMALREIL MLHGGSAGVS TEEFSSDNGF ELKDVLNKVT REREIDLNMQ
0401: VSENELEPLR KRPKIEDPSK SFIDNTVLEV IGGDYDINVK DEDAEFLLPP VKVNGQTDCS STKLEPQSSM DDSTSHSEIN HVAEVNNHFE DKSFIEEPVI
0501: PKQQEENLEV LDLVKQARHS WIKNFEFLQD CTIRFLCVLS LDRFGDYISD QVVAPVREAC AQALGATFKY MNPSLIYETL NILLQMQRRP EWEIRHGSLL
0601: GIKYLVAVRQ EMLQDLLGYI LPACKAGLED SDDDVRAVAA DALIPAAAAI VSLRGQTLLS IVMLLWDILL ELDDLSPSTS SIMNLLAEIY SQDDMTLVMH
0701: EELSLGEEQN IELNEMGHIE SIGERRDVKE SPYALSGLAP RLWPFTRHDI TSVRFSAIRT LERLLEAGCR KNISGQSKSS FWPSSILGDT LRIVFQNLLL
0801: ESTEEILECS ERVWRLLVQC PVDDLEDTAK FYMASWIELA ATPYGSTLDA TKMFWPVAPP RKSHFKAAAK MKAVKLENEA SSILGFDYAR SSASLEKQED
0901: ASARSTKIIV GSDMEMSVTR TRVVTASALG IFASRLREGS MQFVVDPLSS TLTSMSGVQR QVGSIVLISW FRETKCKAPS DGSGSLPGFP SPLKKWLLDL
1001: LACADPAFPT KDIFLPYAEL SRTYTKMRNE ASQLLHTVET CHCFDKLLST NKLNVESVTA DETIDFASTL DLWNKESAGN ESLEKQVFED VESSRQQLLS
1101: TAGYLKCVQS NLHITVTSLV AAAVVWMSEF PARLNPIILP LMASIKREQE QILQQIAAEA LAELIAYCVD RKPSPNDKLI KNICSLTCMD PSETPQASII
1201: SSMDIVDDMD FLSSRSNTGK QKAKVVLASG EDRSKVEGFI TRRGSELALK HLSLKFGGSL FDKLPKLWEC LTEVLVPEIP SDQQKIDLKI ESISDPQVLI
1301: NNIQVVRSIA PVMEETLKPR LLSLLPCIFK CVRHSHVAVR LAASRCVMTM AKSMTTDVMA AVVESAIPML GDLTCISGRQ GAGMLIGLLV QGLGVELVPY
1401: SPLLVVPLLR CMSDVDSSVR QSVTRSFAAL VPMLPLARGV PPPVGLSKDL SSNAEDAKFL EQLLDNSHID DYKLCTELKV QLRRYQQEGI NWLGFLKRFK
1501: LHGILCDDMG LGKTLQASAI VASDAAERRG STDELDVFPS IIVCPSTLVG HWAFEIEKYI DLSLLSVLQY VGSAQDRVSL REQFNNHNVI ITSYDVVRKD
1601: VDYLTQFSWN YCILDEGHII KNAKSKITAA VKQLKAQHRL ILSGTPIQNN IMELWSLFDF LMPGFLGTER QFQASYGKPL LAARDPKCSA KDAEAGVLAM
1701: EALHKQVMPF LLRRTKEEVL SDLPEKIIQD RYCDLSPVQL KLYEQFSGSS AKQEISSIIK VDGSADSGNA DVAPTKASTH VFQALQYLLK LCSHPLLVLG
1801: DKVTEPVASD LAAMINGCSD IITELHKVQH SPKLVALQEI LEECGIGSDA SSSDGTLSVG QHRVLIFAQH KALLDIIEKD LFQAHMKSVT YMRLDGSVVP
1901: EKRFEIVKAF NSDPTIDVLL LTTHVGGLGL NLTSADTLVF MEHDWNPMRD HQAMDRAHRL GQKRVVNVHR LIMRGTLEEK VMSLQKFKVS VANTVINAEN
2001: ASMKTMNTDQ LLDLFASAET SKKGGGSSKK GSEDNDQIAG TGKGMKAILG NLEELWDQSQ YTEEYNLSQF LTKLNGGENE KREVDDIGVV SFGNTTGLMF
2101: VTAEVVFVVD SESCKYAFNQ LFLFCFSFF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.