Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_12s0028g03440.t01 | Wine grape | plastid | 67.52 | 66.59 |
| KRH25617 | Soybean | nucleus | 65.55 | 64.94 |
| PGSC0003DMT400082782 | Potato | plastid | 65.78 | 63.85 |
| Solyc07g053870.2.1 | Tomato | plastid | 64.97 | 63.13 |
| GSMUA_Achr7P00330_001 | Banana | plastid | 62.76 | 62.26 |
| TraesCS2D01G202400.1 | Wheat | plastid | 60.32 | 59.98 |
| TraesCS2B01G222000.1 | Wheat | plastid | 60.09 | 59.75 |
| TraesCS2A01G185300.1 | Wheat | plastid | 60.09 | 59.75 |
| HORVU2Hr1G037590.4 | Barley | plastid | 60.67 | 59.64 |
| Zm00001d013828_P002 | Maize | plastid | 59.63 | 58.48 |
| EER91354 | Sorghum | plastid | 60.09 | 58.33 |
| Os05t0247900-01 | Rice | plastid | 57.89 | 58.29 |
| CDY32510 | Canola | mitochondrion, nucleus | 85.85 | 46.08 |
| CDY37413 | Canola | mitochondrion, nucleus | 85.03 | 45.76 |
| Bra032544.1-P | Field mustard | nucleus | 85.96 | 45.1 |
| AT3G19210.1 | Thale cress | nucleus | 22.51 | 21.32 |
| AT2G18760.3 | Thale cress | nucleus | 25.64 | 17.74 |
| AT5G63950.1 | Thale cress | cytosol | 20.77 | 16.42 |
| AT2G21450.2 | Thale cress | nucleus | 14.62 | 15.31 |
| AT3G32330.1 | Thale cress | cytosol | 5.68 | 14.98 |
| AT2G16390.2 | Thale cress | nucleus | 13.81 | 13.36 |
| AT1G08600.3 | Thale cress | nucleus | 20.88 | 12.17 |
| AT3G24340.1 | Thale cress | nucleus | 13.81 | 10.51 |
| AT3G42670.4 | Thale cress | nucleus | 14.97 | 10.25 |
| AT5G20420.1 | Thale cress | cytosol | 14.27 | 9.75 |
| AT1G05490.1 | Thale cress | mitochondrion, nucleus | 14.62 | 8.94 |
| AT3G31900.1 | Thale cress | cytosol | 3.94 | 8.65 |
| AT3G54280.2 | Thale cress | mitochondrion | 20.88 | 8.45 |
| AT3G32280.1 | Thale cress | endoplasmic reticulum, plasma membrane | 3.94 | 7.17 |
Protein Annotations
| MapMan:12.4.1.4.3 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | EntrezGene:839417 | UniProt:A0A178WG64 | ProteinID:AAD10693.1 |
| ProteinID:AEE27606.1 | ArrayExpress:AT1G03750 | EnsemblPlantsGene:AT1G03750 | RefSeq:AT1G03750 | TAIR:AT1G03750 | RefSeq:AT1G03750-TAIR-G |
| EnsemblPlants:AT1G03750.1 | TAIR:AT1G03750.1 | Unigene:At.42526 | Symbol:CHR9 | UniProt:F4I2H2 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006950 |
| GO:GO:0006974 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016787 |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR038718 | RefSeq:NP_171871.2 |
| ProteinID:OAP17236.1 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF804 |
| SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 | UniParc:UPI000034F3FF |
| SEG:seg | : | : | : | : | : |
Description
SWI2Switch 2 [Source:UniProtKB/Swiss-Prot;Acc:F4I2H2]
Coordinates
chr1:+:937826..941162
Molecular Weight (calculated)
98491.9 Da
IEP (calculated)
6.958
GRAVY (calculated)
-0.512
Length
862 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLLHTFKET LKPCGSFPSS SSLRVSSTQE LEPSRKPPKS SLSQQLLRLD DSYFLPSKHE SKISKTQVED FDHNEDDHKR NIKFDEEEVD EDDERSIEFG
101: RPGLSRAEFD YSGPYEPLML SSIGEIPIIH VPASINCRLL EHQREGVKFM YNLYKNNHGG ILGDDMGLGK TIQTIAFLAA VYGKDGDAGE SCLLESDKGP
201: VLIICPSSII HNWESEFSRW ASFFKVSVYH GSNRDMILEK LKARGVEVLV TSFDTFRIQG PVLSGINWEI VIADEAHRLK NEKSKLYEAC LEIKTKKRIG
301: LTGTVMQNKI SELFNLFEWV APGSLGTREH FRDFYDEPLK LGQRATAPER FVQIADKRKQ HLGSLLRKYM LRRTKEETIG HLMMGKEDNV VFCQMSQLQR
401: RVYQRMIQLP EIQCLVNKDN PCACGSPLKQ SECCRRIVPD GTIWSYLHRD NHDGCDSCPF CLVLPCLMKL QQISNHLELI KPNPKDEPEK QKKDAEFVST
501: VFGTDIDLLG GISASKSFMD LSDVKHCGKM RALEKLMASW ISKGDKILLF SYSVRMLDIL EKFLIRKGYS FARLDGSTPT NLRQSLVDDF NASPSKQVFL
601: ISTKAGGLGL NLVSANRVVI FDPNWNPSHD LQAQDRSFRY GQKRHVVVFR LLSAGSLEEL VYTRQVYKQQ LSNIAVAGKM ETRYFEGVQD CKEFQGELFG
701: ISNLFRDLSD KLFTSDIVEL HRDSNIDENK KRSLLETGVS EDEKEEEVMC SYKPEMEKPI LKDLGIVYAH RNEDIINIGE TTTSTSQRLN GDGNSADRKK
801: KKRKGCSEEE DMSSSNREQK REKYKMLAEF KGMEILEFSR WVLSASPFDR EKLLQDFLER VK
101: RPGLSRAEFD YSGPYEPLML SSIGEIPIIH VPASINCRLL EHQREGVKFM YNLYKNNHGG ILGDDMGLGK TIQTIAFLAA VYGKDGDAGE SCLLESDKGP
201: VLIICPSSII HNWESEFSRW ASFFKVSVYH GSNRDMILEK LKARGVEVLV TSFDTFRIQG PVLSGINWEI VIADEAHRLK NEKSKLYEAC LEIKTKKRIG
301: LTGTVMQNKI SELFNLFEWV APGSLGTREH FRDFYDEPLK LGQRATAPER FVQIADKRKQ HLGSLLRKYM LRRTKEETIG HLMMGKEDNV VFCQMSQLQR
401: RVYQRMIQLP EIQCLVNKDN PCACGSPLKQ SECCRRIVPD GTIWSYLHRD NHDGCDSCPF CLVLPCLMKL QQISNHLELI KPNPKDEPEK QKKDAEFVST
501: VFGTDIDLLG GISASKSFMD LSDVKHCGKM RALEKLMASW ISKGDKILLF SYSVRMLDIL EKFLIRKGYS FARLDGSTPT NLRQSLVDDF NASPSKQVFL
601: ISTKAGGLGL NLVSANRVVI FDPNWNPSHD LQAQDRSFRY GQKRHVVVFR LLSAGSLEEL VYTRQVYKQQ LSNIAVAGKM ETRYFEGVQD CKEFQGELFG
701: ISNLFRDLSD KLFTSDIVEL HRDSNIDENK KRSLLETGVS EDEKEEEVMC SYKPEMEKPI LKDLGIVYAH RNEDIINIGE TTTSTSQRLN GDGNSADRKK
801: KKRKGCSEEE DMSSSNREQK REKYKMLAEF KGMEILEFSR WVLSASPFDR EKLLQDFLER VK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.