Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G31900.1 | Thale cress | cytosol | 52.29 | 43.51 |
| AT3G32280.1 | Thale cress | endoplasmic reticulum, plasma membrane | 54.13 | 37.34 |
| AT2G16390.2 | Thale cress | nucleus | 39.45 | 14.48 |
| AT2G21450.2 | Thale cress | nucleus | 33.95 | 13.49 |
| AT3G24340.1 | Thale cress | nucleus | 22.94 | 6.63 |
| AT5G20420.1 | Thale cress | cytosol | 23.85 | 6.19 |
| AT3G42670.4 | Thale cress | nucleus | 22.94 | 5.96 |
| AT3G19210.1 | Thale cress | nucleus | 16.21 | 5.82 |
| AT1G03750.1 | Thale cress | plastid | 14.98 | 5.68 |
| AT1G05490.1 | Thale cress | mitochondrion, nucleus | 23.55 | 5.46 |
| AT5G63950.1 | Thale cress | cytosol | 16.51 | 4.95 |
| AT1G08600.3 | Thale cress | nucleus | 16.51 | 3.65 |
| AT2G18760.3 | Thale cress | nucleus | 12.84 | 3.37 |
| AT3G54280.2 | Thale cress | mitochondrion | 14.37 | 2.21 |
Protein Annotations
| Gene3D:3.40.50.10810 | MapMan:35.1 | EntrezGene:823009 | ProteinID:AEE77696.1 | ArrayExpress:AT3G32330 | EnsemblPlantsGene:AT3G32330 |
| RefSeq:AT3G32330 | TAIR:AT3G32330 | RefSeq:AT3G32330-TAIR-G | EnsemblPlants:AT3G32330.1 | TAIR:AT3G32330.1 | Unigene:At.66569 |
| ncoils:Coil | UniProt:F4JA85 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0009506 | InterPro:IPR038718 |
| RefSeq:NP_683620.1 | InterPro:P-loop_NTPase | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF807 | InterPro:SNF2-like_sf | SUPFAM:SSF52540 |
| UniParc:UPI000016366A | : | : | : | : | : |
Description
DNA repair protein-like protein [Source:UniProtKB/TrEMBL;Acc:F4JA85]
Coordinates
chr3:+:13276082..13277155
Molecular Weight (calculated)
37189.5 Da
IEP (calculated)
8.684
GRAVY (calculated)
-0.152
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: MRVPKDGFSG TGIFPHPFHK MIMKPHHFEI LNFLYKNLVV ENSNGCIIAQ TPLSEKTFLM ISFIYGYLEK HPNSKSLFVL PKWVLNLEVL KRWIKTWSII
101: FLGAKQFSNI VSDNSGAEAS DSCRDILLNI LSVVVFDRGT DPRNEMMSFL KVVSRIKTPH KVLLTGSLYQ NNIKEVFNIL DVAFPEFLKH NQIGKNFRKL
201: LNVEADGPST NLKMPLFDKL EEALLSQDSD HGDKICYLTE LKMLTNKVIY NHKGECLLEV PGLMDFTVVL KPTSSQKSAW EVERKSNGKG FKKYSTLSGI
301: MLHPLLCAFS DRAKGLPAPN EDEMDEM
101: FLGAKQFSNI VSDNSGAEAS DSCRDILLNI LSVVVFDRGT DPRNEMMSFL KVVSRIKTPH KVLLTGSLYQ NNIKEVFNIL DVAFPEFLKH NQIGKNFRKL
201: LNVEADGPST NLKMPLFDKL EEALLSQDSD HGDKICYLTE LKMLTNKVIY NHKGECLLEV PGLMDFTVVL KPTSSQKSAW EVERKSNGKG FKKYSTLSGI
301: MLHPLLCAFS DRAKGLPAPN EDEMDEM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.