Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021841.1-P | Field mustard | cytosol | 72.78 | 78.4 |
| CDY37734 | Canola | nucleus | 71.81 | 78.17 |
| CDY23754 | Canola | cytosol | 71.81 | 76.65 |
| CDY67491 | Canola | cytosol | 14.58 | 75.95 |
| CDY16534 | Canola | nucleus | 35.72 | 67.43 |
| Bra000888.1-P | Field mustard | cytosol | 35.72 | 64.05 |
| AT2G16390.2 | Thale cress | nucleus | 47.39 | 43.77 |
| AT3G32330.1 | Thale cress | cytosol | 13.49 | 33.95 |
| AT3G31900.1 | Thale cress | cytosol | 10.45 | 21.88 |
| AT3G32280.1 | Thale cress | endoplasmic reticulum, plasma membrane | 11.91 | 20.68 |
| AT3G42670.4 | Thale cress | nucleus | 25.39 | 16.61 |
| AT3G24340.1 | Thale cress | nucleus | 22.84 | 16.61 |
| AT5G20420.1 | Thale cress | cytosol | 24.79 | 16.18 |
| AT1G03750.1 | Thale cress | plastid | 15.31 | 14.62 |
| AT1G05490.1 | Thale cress | mitochondrion, nucleus | 24.54 | 14.33 |
| AT3G19210.1 | Thale cress | nucleus | 14.34 | 12.97 |
| AT5G63950.1 | Thale cress | cytosol | 16.16 | 12.2 |
| AT1G08600.3 | Thale cress | nucleus | 19.08 | 10.62 |
| AT2G18760.3 | Thale cress | nucleus | 14.46 | 9.55 |
| AT3G54280.2 | Thale cress | mitochondrion | 13.73 | 5.31 |
Protein Annotations
| Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | MapMan:35.1 | EntrezGene:816684 | UniProt:A0A1P8B2I9 | ProteinID:ANM63098.1 |
| ArrayExpress:AT2G21450 | EnsemblPlantsGene:AT2G21450 | RefSeq:AT2G21450 | TAIR:AT2G21450 | RefSeq:AT2G21450-TAIR-G | EnsemblPlants:AT2G21450.2 |
| Unigene:At.39568 | Symbol:CHR34 | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR038718 |
| RefSeq:NP_001325209.1 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 |
| PANTHER:PTHR10799 | PANTHER:PTHR10799:SF807 | SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N |
| SUPFAM:SSF52540 | UniParc:UPI00084959F6 | SEG:seg | : | : | : |
Description
CHR34chromatin remodeling 34 [Source:TAIR;Acc:AT2G21450]
Coordinates
chr2:-:9179410..9183037
Molecular Weight (calculated)
94104.8 Da
IEP (calculated)
7.481
GRAVY (calculated)
-0.499
Length
823 amino acids
Sequence
(BLAST)
(BLAST)
001: MVGTNQFSFS KPRETPWNLR SRSRSITQEE LAKRPDPFCL PNLLDGLEDG LYGRLADDVK RLCKLRQEYL NGSISLEDIE ARQDNKRAKS SHNLIIDSDD
101: ELPQESPLEK RLKKLKEVIV VKNGDSSGSD SSPQGYDEED SSRNSTDIDN QSLYVDAEEE EELWRKMAFA QESIKVTVED SQSNDHKQIE DCDHSFICKD
201: DIGEVCRVCG LIKKPIESMI EVVFNKQKRS RRTYMREKEN GETSRDFSGI QSSHTNILGE KMFIHPWHDQ EMRPHQTEGF RFLCNNLAAD EPGGCILAHA
301: PGSGKTFLLI SFLQSFMAMD PQARPLVVLP KGIIESWKRE FTLWEVEKIP LLDFYSVKAE SRKQQLKVLG QWIKERSILF LGYQQFTRII CDDNFEAASE
401: DCKLILLEKP TLLILDEGHT SRNKETYMLS SLARVKTRRK VVLTGTLFQN NVEEVFNILD LVRPKFLKRP GTREIVSRIM SKAEIPRGKQ VNQSSSSIEG
501: TFFAAVELTL QRSTNFSAKA SLIKDLREMT RNILHYHKAD FSGLLPGLSE FTVMLNLSSI QRDEVKGLRK MELFKQISLG AALYIHPKLK SFLEENPSNG
601: EKGFSDNNTT VMKLDKMLKK INVRDGVKMK FFLNLLALCE STGEKLLVFS QYIVPIKTLE RLMSSMKGWR LGKEMFTITG DSSNEQREWS MERFNNSLEA
701: KVFFGSIKAC GEGISLVGAS RVLILDVHLN PSVTQQAVAR AYRPGQKRKV YAYKLVAADS PEEENYETCT RKEMMSKMWF EWNVGSGRED FGFRAIDADH
801: SGDAFLETTK MKEDIKCLYT KVN
101: ELPQESPLEK RLKKLKEVIV VKNGDSSGSD SSPQGYDEED SSRNSTDIDN QSLYVDAEEE EELWRKMAFA QESIKVTVED SQSNDHKQIE DCDHSFICKD
201: DIGEVCRVCG LIKKPIESMI EVVFNKQKRS RRTYMREKEN GETSRDFSGI QSSHTNILGE KMFIHPWHDQ EMRPHQTEGF RFLCNNLAAD EPGGCILAHA
301: PGSGKTFLLI SFLQSFMAMD PQARPLVVLP KGIIESWKRE FTLWEVEKIP LLDFYSVKAE SRKQQLKVLG QWIKERSILF LGYQQFTRII CDDNFEAASE
401: DCKLILLEKP TLLILDEGHT SRNKETYMLS SLARVKTRRK VVLTGTLFQN NVEEVFNILD LVRPKFLKRP GTREIVSRIM SKAEIPRGKQ VNQSSSSIEG
501: TFFAAVELTL QRSTNFSAKA SLIKDLREMT RNILHYHKAD FSGLLPGLSE FTVMLNLSSI QRDEVKGLRK MELFKQISLG AALYIHPKLK SFLEENPSNG
601: EKGFSDNNTT VMKLDKMLKK INVRDGVKMK FFLNLLALCE STGEKLLVFS QYIVPIKTLE RLMSSMKGWR LGKEMFTITG DSSNEQREWS MERFNNSLEA
701: KVFFGSIKAC GEGISLVGAS RVLILDVHLN PSVTQQAVAR AYRPGQKRKV YAYKLVAADS PEEENYETCT RKEMMSKMWF EWNVGSGRED FGFRAIDADH
801: SGDAFLETTK MKEDIKCLYT KVN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.