CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16534	Canola	nucleus	99.37	36.01
Bra000888.1-P	Field mustard	cytosol	98.1	33.77
CDY29038	Canola	nucleus	17.09	15.34
CDY37734	Canola	nucleus	72.15	15.08
CDY23754	Canola	cytosol	73.42	15.05
CDY59589	Canola	nucleus	16.46	14.77
AT2G21450.2	Thale cress	nucleus	75.95	14.58
CDX89710	Canola	nucleus	48.73	8.91
CDX77430	Canola	nucleus	27.22	6.39
CDX93009	Canola	nucleus	25.95	4.23
CDY66441	Canola	nucleus	27.22	4.16
CDX94823	Canola	nucleus	25.32	4.11
CDX92463	Canola	nucleus	28.48	3.56
CDX99258	Canola	nucleus	20.25	3.53
CDX92308	Canola	nucleus	20.25	3.51
CDY56857	Canola	cytosol	27.85	3.48
CDY47279	Canola	nucleus	27.22	3.22
CDY10115	Canola	nucleus	27.22	3.12
CDX95047	Canola	nucleus	22.15	2.36
CDX93550	Canola	nucleus	22.15	2.34
CDX84469	Canola	cytosol, mitochondrion, nucleus, plastid	16.46	2.27
CDY43772	Canola	mitochondrion	16.46	2.24
CDY51705	Canola	nucleus	13.29	1.81
CDX92882	Canola	nucleus	12.66	1.77
CDY37413	Canola	mitochondrion, nucleus	15.19	1.5
CDY32510	Canola	mitochondrion, nucleus	15.19	1.49
CDX78225	Canola	mitochondrion	13.92	1.09
CDX73492	Canola	mitochondrion	13.92	1.06
CDY22674	Canola	nucleus	1.27	0.26
CDY13196	Canola	cytosol, nucleus, plastid	0.0	0.0
CDX78226	Canola	cytosol	0.0	0.0
CDY06321	Canola	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:CDY67491	EnsemblPlantsGene:GSBRNA2T00063669001	Gene3D:3.40.50.10810	GO:A0A078JP35	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:IPR038718	InterPro:P-loop_NTPase	InterPro:SNF2-like_sf	InterPro:SNF2_N
PANTHER:PTHR10799	PANTHER:PTHR10799:SF807	PFAM:PF00176	ProteinID:CDY67491	ProteinID:CDY67491.1	SUPFAM:SSF52540
UniParc:UPI0004EE4A41	UniProt:A0A078JP35	MapMan:35.1	:	:	:

Description

BnaCnng55270DBnaCnng55270D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JP35]

Coordinates

chrLK036167:+:4615..5091

Molecular Weight (calculated)

18471.7 Da

IEP (calculated)

9.167

GRAVY (calculated)

-0.138

Length

158 amino acids

Sequence
(BLAST)

001: MAMDPQAKPL IVLPKGIIES WKREFTKWAV ENIPLYSVKA ESRRQQLKVL REWVEERSIL LLGYQQFAKI ICDDSINIDD EVSEDCKRIL LEKPTLLILD
101: EGHTSRNKET NMLISLARVR TPRKVVLTGT FVFIMADWYT PTLNNRFTLF TLNSFVRL

Best Arabidopsis Sequence Match ( AT2G16390.1 )
(BLAST)

001: MGFVYIVMTG YYKNVHKRKQ NQVDDGPEAK RVKSSAKVID YSNPFAVSNM LEALDSGKFG SVSKELEEIA DMRMDLVKRS IWLYPSLAYT VFEAEKTMDN
101: QQVVEGVINL DDDDDDDTDV EKKALCVVPS SSEIVLLDSD DEDNERQRPM YQFQSTLVQH QKNQGDVTPL IPQCSFEEVD LGRGKEMPSA IKAIVEGQTS
201: RGKVLPIENG VVNEKGVYVG VEEDDSDNES EAADEDLGNI WNEMALSIEC SKDVARETSH KEKADVVEDC EHSFILKDDM GYVCRVCGVI EKSILEIIDV
301: QFTKAKRNTR TYASETRTKR FGESDNELKF SEEGLMIGGL AAHPTHAAEM KPHQIEGFQF LCSNLVADDP GGCIMAHAPG SGKTFMIISF MQSFLAKYPQ
401: AKPLVVLPKG ILPTWKKEFV RWQVEDIPLL DFYSAKAENR AQQLSILKQW MEKKSILFLG YQQFSTIVCD DTTDSLSCQE ILLKVPSILI LDEGHTPRNE
501: DTNLLQSLAQ VQTPRKVVLS GTLYQNHVKE VFNILNLVRP KFLKLDTSKS AVKRILAYTP CDVRGRLTGS NSDMASMFNE TVEHTLQKSE DFTVKIKVIQ
601: DLREMTKKVL HYYKGDFLDE LPGLADFTVV LNLSPKQLNE VKKLRREKRK FKVSAVGSAI YLHPKLKVFS DKSDDVSDTT MDEMVEKLDL NEGVKAKFFL
701: NLINLCDSAG EKLLVFSQYL IPLKFLERLA ALAKGWKLGK EVFVLTGNTS SEQREWSMET FNSSPDAKIF FGSIKACGEG ISLVGASRIL ILDVPLNPSV
801: TRQAIGRAFR PGQKKMVHAY RLIAGSSPEE EDHNTCFKKE VISKMWFEWN EYCGYQNFEV ETIDVDEAGD TFLESPALRE DIRVLYKR

Arabidopsis Description

DRD1SNF2 domain-containing protein / helicase domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8B0G3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.