Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra031634.1-P | Field mustard | nucleus | 96.56 | 96.73 |
| CDY22674 | Canola | nucleus | 83.16 | 62.86 |
| CDX93550 | Canola | nucleus | 67.7 | 26.39 |
| CDX95047 | Canola | nucleus | 66.84 | 26.28 |
| HORVU3Hr1G014630.1 | Barley | cytosol, nucleus, plastid | 3.09 | 5.94 |
| CDY13196 | Canola | cytosol, nucleus, plastid | 2.75 | 4.08 |
| PGSC0003DMT400033315 | Potato | nucleus | 0.69 | 2.76 |
| CDX92882 | Canola | nucleus | 5.33 | 2.75 |
| CDX84469 | Canola | cytosol, mitochondrion, nucleus, plastid | 5.33 | 2.71 |
| CDX78226 | Canola | cytosol | 0.86 | 2.7 |
| CDY51705 | Canola | nucleus | 5.33 | 2.67 |
| CDY43772 | Canola | mitochondrion | 5.33 | 2.67 |
| CDX73492 | Canola | mitochondrion | 7.9 | 2.21 |
| CDX92308 | Canola | nucleus | 3.26 | 2.09 |
| CDY16534 | Canola | nucleus | 1.55 | 2.06 |
| CDX78225 | Canola | mitochondrion | 7.04 | 2.03 |
| CDX89710 | Canola | nucleus | 2.92 | 1.97 |
| CDX99258 | Canola | nucleus | 2.92 | 1.87 |
| CDY23754 | Canola | cytosol | 2.41 | 1.82 |
| CDY56857 | Canola | cytosol | 3.78 | 1.74 |
| CDX92463 | Canola | nucleus | 3.78 | 1.74 |
| CDY37734 | Canola | nucleus | 2.23 | 1.72 |
| PGSC0003DMT400004673 | Potato | nucleus | 2.58 | 1.64 |
| PGSC0003DMT400096321 | Potato | nucleus | 0.34 | 1.6 |
| CDY10115 | Canola | nucleus | 3.78 | 1.6 |
| CDY47279 | Canola | nucleus | 3.61 | 1.57 |
| PGSC0003DMT400017313 | Potato | nucleus | 3.09 | 1.49 |
| PGSC0003DMT400037430 | Potato | nucleus | 1.72 | 1.49 |
| PGSC0003DMT400038789 | Potato | nucleus | 2.58 | 1.36 |
| PGSC0003DMT400004672 | Potato | nucleus | 2.23 | 1.31 |
| CDX93009 | Canola | nucleus | 2.06 | 1.24 |
| CDY66441 | Canola | nucleus | 1.89 | 1.06 |
| CDY37413 | Canola | mitochondrion, nucleus | 2.92 | 1.06 |
| CDY32510 | Canola | mitochondrion, nucleus | 2.92 | 1.06 |
| CDX94823 | Canola | nucleus | 1.72 | 1.03 |
| PGSC0003DMT400004629 | Potato | nucleus | 1.37 | 0.9 |
| PGSC0003DMT400090992 | Potato | mitochondrion | 0.34 | 0.82 |
| CDX77430 | Canola | nucleus | 0.86 | 0.74 |
| PGSC0003DMT400017302 | Potato | nucleus | 0.69 | 0.64 |
| PGSC0003DMT400085993 | Potato | cytosol | 0.17 | 0.6 |
| PGSC0003DMT400085944 | Potato | cytosol | 0.17 | 0.43 |
| CDY67491 | Canola | cytosol | 0.0 | 0.0 |
| CDY59589 | Canola | nucleus | 0.0 | 0.0 |
| PGSC0003DMT400088837 | Potato | cytosol | 0.0 | 0.0 |
| CDY29038 | Canola | nucleus | 0.0 | 0.0 |
| Solyc08g061350.1.1 | Tomato | mitochondrion | 0.0 | 0.0 |
| Zm00001d047708_P001 | Maize | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY06321 | EnsemblPlantsGene:GSBRNA2T00122250001 | ncoils:Coil | ProteinID:CDY06321 | ProteinID:CDY06321.1 | SEG:seg |
| UniParc:UPI0004EE5482 | MapMan:35.1 | : | : | : | : |
Description
BnaA09g48820D
Coordinates
chrLK031968:+:789965..793134
Molecular Weight (calculated)
66189.4 Da
IEP (calculated)
4.224
GRAVY (calculated)
-0.884
Length
582 amino acids
Sequence
(BLAST)
(BLAST)
001: MDARDDNEDP MEAKEEENIN ESIMEMQDDQ QMEENNNQDE EMQAVDTRSE SCVSLSDDEE QLLMGHDDES DLEKPLSEEE IDELISELVG VESKAAEAQK
101: AIEEESLAKV EGEVREKLAR TLRGLDKSVS AEMMTFKDVR EETLDNLEIK SANLLEQLSG AGVELPKLYK MIESQVPSRL YTEAWKKRAH WVGTQVTEET
201: VESLANAESF LQTHRPVRKR HGELLEEGAS GFLEKKFADD GVKESQAGPS ELDWSSLNKV FTEKKDEAVS FGSKNWASVY SASTPQQAAA MGLEFPGVNE
301: VEEIEEIDAD LEGTFFADAM ENERVLAQTE EQKKNYTRAR EEDDINIDLQ LRLNQKRRKT RSKQVIRHTA ENSDDESACL YENNTVPNPA EDQVKCLETS
401: TQFQNNEDDK EESMNLSNSD VDEMVPVTES YAEDSQNTST KQKVGCCSDK LMENLLQLHN PNWISSLHEH ETFLKENEEE NPTMEEKDMA WEVYRRALEW
501: KGVQRVAPEL QKPLPSPQTV TPRLPKRFNR SRFVIRNCTR TAHQRTLISQ GSKVGSSTVC GECGLVLTWE DVTTPAPKID YF
101: AIEEESLAKV EGEVREKLAR TLRGLDKSVS AEMMTFKDVR EETLDNLEIK SANLLEQLSG AGVELPKLYK MIESQVPSRL YTEAWKKRAH WVGTQVTEET
201: VESLANAESF LQTHRPVRKR HGELLEEGAS GFLEKKFADD GVKESQAGPS ELDWSSLNKV FTEKKDEAVS FGSKNWASVY SASTPQQAAA MGLEFPGVNE
301: VEEIEEIDAD LEGTFFADAM ENERVLAQTE EQKKNYTRAR EEDDINIDLQ LRLNQKRRKT RSKQVIRHTA ENSDDESACL YENNTVPNPA EDQVKCLETS
401: TQFQNNEDDK EESMNLSNSD VDEMVPVTES YAEDSQNTST KQKVGCCSDK LMENLLQLHN PNWISSLHEH ETFLKENEEE NPTMEEKDMA WEVYRRALEW
501: KGVQRVAPEL QKPLPSPQTV TPRLPKRFNR SRFVIRNCTR TAHQRTLISQ GSKVGSSTVC GECGLVLTWE DVTTPAPKID YF
0001: MEANEESLKG KIEKLEGKEV IVESKEDEMD IIIEENREAE QEVMEVKARD GRGEQNDVLM EENNNQGEQK DEEMQDASSR SESSDFNSDE DEQILSRRDD
0101: ELDLEKPLSE EEIDELISDL LAVESKAAEA QEALEKESLS KVESEVREEL AQALRGDELD EAVAAEMMTF KDEWEATLDE LETESATLLE QLDGAGIELP
0201: KLYEMIESQA PNGCYTEAWK QRAHWVGTQV TKETVESLAN AERFLHTHRP VRKRHGKLLE EGASGFLEKK LADGAVKESL AGTSELDWSS LNKVFSEKRD
0301: ESVSFGSKQW ASVYLASTPH QAAAMGLEFP GVNEVEEIEE IDASLADPFL ADAIDNEREL ALTEEQKTNY IRVKEEDDIT CDRVLQLRLK RKRRKKRSKQ
0401: VIRCAAENMD DDSVYLDGNN TTPNFAKDQV KSPETSTQVH NSEVNIEENG NFSNSDVDKM TPSTHINVDA KRDDSQNPAN NFRCTACNKV AVEVHSHPLL
0501: EVIVCMDCKR SIEDRVSKVD DSLERHCEWC GHIADLIDCR TCEKLFCASC IKRNIGEEYM SEAQSSGWDC CCCSPIPLQR LTLELEKAMR DKKSIELSSD
0601: SSSDSSSDNN SVDTDADVNV TISSKKKSKK KIRRIIDDAE LGKDTRTKIA IEKARQERLR SLQFSARYKT ISSMGDVKSI PEGAEVEVLG DAHSGYIVNV
0701: VREIGEEAVR VPRSISAKLK VHQVTGIRFM WENIIQSISR VKSGDKGLGC ILAHTMGLGK TFQVIAFLYT AMRCVDLGLK TALIVTPVNV LHNWRSEFEK
0801: WMPSEVKPLR IFMLGDVSRY KFFYERNFWG VKDLNAARGI CNALRDGPDI LVCDEAHIIK NTKADTTQAL KQVKCQRRIA LTGSPLQNNL MEYYCMVDFV
0901: REGFLGSSPE FRNRFQNPIE NGQHMNSTAE DVKIMNQRSH ILYEQLKGFV QRMDMNVVKK DLPPKTVFVI SVKLSPLQRI LYQRFLELYG FSDGRTDERM
1001: RKNFFAAYQV LAQILNHPGI PQLRSEDSKN GRRGSIVDIP DDCSSDENID YNMVTGEKQR TMNDLQDKVD GYLQKDWWVD LLQKNNYKVS DFSGKMILLL
1101: DILSMSADVG DKALVFSQSI PTLDLIELYL SRVPRHGKQG KFWKKGKDWY RIDGKTESSE RQKLVDRFNE PDNKRVKCTL ISTRAGSLGI NLYAANRVII
1201: VDGSWNPTYD LQAIFRAWRY GQKKPVFAYR LMARGTIEEK IYKRQVTKEG LAARVVDRQQ VHRTISKEEM LHLFEFDDDD EKSEAVTEIS KQNEAGHSNL
1301: VEQAILWTKK ATLSRVGGDK LMENLLQRHG PNWISSFHEH ETLLQENEEE RLTKEEKDMA WEVYRRALEW EEVQRVPFSE SPVVPKPSPS TQTEPLPQPK
1401: GFNRSRFVNR NCTRIAHQLT LISQGLKVGS STVCGECGRV IRWEDVIPAS KLSAVIVN
0101: ELDLEKPLSE EEIDELISDL LAVESKAAEA QEALEKESLS KVESEVREEL AQALRGDELD EAVAAEMMTF KDEWEATLDE LETESATLLE QLDGAGIELP
0201: KLYEMIESQA PNGCYTEAWK QRAHWVGTQV TKETVESLAN AERFLHTHRP VRKRHGKLLE EGASGFLEKK LADGAVKESL AGTSELDWSS LNKVFSEKRD
0301: ESVSFGSKQW ASVYLASTPH QAAAMGLEFP GVNEVEEIEE IDASLADPFL ADAIDNEREL ALTEEQKTNY IRVKEEDDIT CDRVLQLRLK RKRRKKRSKQ
0401: VIRCAAENMD DDSVYLDGNN TTPNFAKDQV KSPETSTQVH NSEVNIEENG NFSNSDVDKM TPSTHINVDA KRDDSQNPAN NFRCTACNKV AVEVHSHPLL
0501: EVIVCMDCKR SIEDRVSKVD DSLERHCEWC GHIADLIDCR TCEKLFCASC IKRNIGEEYM SEAQSSGWDC CCCSPIPLQR LTLELEKAMR DKKSIELSSD
0601: SSSDSSSDNN SVDTDADVNV TISSKKKSKK KIRRIIDDAE LGKDTRTKIA IEKARQERLR SLQFSARYKT ISSMGDVKSI PEGAEVEVLG DAHSGYIVNV
0701: VREIGEEAVR VPRSISAKLK VHQVTGIRFM WENIIQSISR VKSGDKGLGC ILAHTMGLGK TFQVIAFLYT AMRCVDLGLK TALIVTPVNV LHNWRSEFEK
0801: WMPSEVKPLR IFMLGDVSRY KFFYERNFWG VKDLNAARGI CNALRDGPDI LVCDEAHIIK NTKADTTQAL KQVKCQRRIA LTGSPLQNNL MEYYCMVDFV
0901: REGFLGSSPE FRNRFQNPIE NGQHMNSTAE DVKIMNQRSH ILYEQLKGFV QRMDMNVVKK DLPPKTVFVI SVKLSPLQRI LYQRFLELYG FSDGRTDERM
1001: RKNFFAAYQV LAQILNHPGI PQLRSEDSKN GRRGSIVDIP DDCSSDENID YNMVTGEKQR TMNDLQDKVD GYLQKDWWVD LLQKNNYKVS DFSGKMILLL
1101: DILSMSADVG DKALVFSQSI PTLDLIELYL SRVPRHGKQG KFWKKGKDWY RIDGKTESSE RQKLVDRFNE PDNKRVKCTL ISTRAGSLGI NLYAANRVII
1201: VDGSWNPTYD LQAIFRAWRY GQKKPVFAYR LMARGTIEEK IYKRQVTKEG LAARVVDRQQ VHRTISKEEM LHLFEFDDDD EKSEAVTEIS KQNEAGHSNL
1301: VEQAILWTKK ATLSRVGGDK LMENLLQRHG PNWISSFHEH ETLLQENEEE RLTKEEKDMA WEVYRRALEW EEVQRVPFSE SPVVPKPSPS TQTEPLPQPK
1401: GFNRSRFVNR NCTRIAHQLT LISQGLKVGS STVCGECGRV IRWEDVIPAS KLSAVIVN
Arabidopsis Description
ATRXCHR20 [Source:UniProtKB/TrEMBL;Acc:A0A178VZQ9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.