CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70947
CDX88837
CDX92430
CDY16571

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G19210.1	CDX70947	AT5G20850.1	17227544
AT3G19210.1	CDX88837	AT5G20850.1	17227544
AT3G19210.1	CDX92430	AT5G20850.1	17227544
AT3G19210.1	CDY16571	AT5G20850.1	17227544
AT3G19210.1	CDX70947	AT5G20850.1	18430956
AT3G19210.1	CDX88837	AT5G20850.1	18430956
AT3G19210.1	CDX92430	AT5G20850.1	18430956
AT3G19210.1	CDY16571	AT5G20850.1	18430956

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92308	Canola	nucleus	98.46	98.02
Bra022395.1-P	Field mustard	nucleus	98.02	97.37
AT3G19210.1	Thale cress	nucleus	89.75	89.45
KRH77966	Soybean	nucleus	67.36	67.89
HORVU1Hr1G071540.2	Barley	nucleus	19.74	65.57
HORVU7Hr1G119270.3	Barley	nucleus	20.18	65.36
Solyc04g056410.2.1	Tomato	nucleus	42.12	65.08
Solyc04g056400.2.1	Tomato	cytosol, nucleus, plastid	25.69	63.14
VIT_03s0063g00580.t01	Wine grape	nucleus	67.7	62.78
GSMUA_Achr5P24600_001	Banana	nucleus	64.39	62.53
EES07568	Sorghum	nucleus	65.05	60.82
Zm00001d018151_P003	Maize	nucleus	64.5	60.43
HORVU6Hr1G078680.2	Barley	nucleus	64.83	60.18
TraesCS6A01G321200.1	Wheat	nucleus	64.5	60.12
Os02t0762800-00	Rice	nucleus	64.72	59.9
TraesCS6B01G351900.1	Wheat	nucleus	63.73	57.63
TraesCS6D01G300900.1	Wheat	cytosol	64.06	54.86
CDX78226	Canola	cytosol	5.84	28.65
CDY67491	Canola	cytosol	3.53	20.25
CDY29038	Canola	nucleus	3.64	18.75
CDY59589	Canola	nucleus	3.64	18.75
CDX77430	Canola	nucleus	13.23	17.83
CDX92882	Canola	nucleus	20.73	16.65
CDY51705	Canola	nucleus	20.73	16.22
CDY23754	Canola	cytosol	13.23	15.56
CDY37734	Canola	nucleus	12.9	15.48
CDX84469	Canola	cytosol, mitochondrion, nucleus, plastid	18.96	15.01
CDY43772	Canola	mitochondrion	19.07	14.91
CDX95047	Canola	nucleus	22.49	13.78
CDX93009	Canola	nucleus	14.55	13.61
CDX93550	Canola	nucleus	22.27	13.53
CDX94823	Canola	nucleus	14.22	13.24
CDX89710	Canola	nucleus	12.57	13.19
CDY66441	Canola	nucleus	14.11	12.39
CDY16534	Canola	nucleus	5.84	12.16
CDY32510	Canola	mitochondrion, nucleus	21.39	12.08
CDY37413	Canola	mitochondrion, nucleus	21.28	12.05
CDY22674	Canola	nucleus	9.7	11.43
CDX92463	Canola	nucleus	14.11	10.12
CDY56857	Canola	cytosol	14.0	10.04
CDY47279	Canola	nucleus	14.44	9.8
CDY10115	Canola	nucleus	14.55	9.57
CDX73492	Canola	mitochondrion	20.07	8.75
CDX78225	Canola	mitochondrion	14.44	6.49
CDY06321	Canola	nucleus	1.87	2.92
CDY13196	Canola	cytosol, nucleus, plastid	0.66	1.53

Protein Annotations

Gene3D:1.20.120.850	MapMan:12.4.1.3.1	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	GO:A0A078EIS6	EnsemblPlants:CDX99258
ProteinID:CDX99258	ProteinID:CDX99258.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
EnsemblPlantsGene:GSBRNA2T00107499001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR038718
InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799
PANTHER:PTHR10799:SF889	SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540
UniParc:UPI0004EE28A9	SEG:seg	:	:	:	:

Description

BnaC05g33730D

Coordinates

chrLK031909:+:614723..620727

Molecular Weight (calculated)

101442.0 Da

IEP (calculated)

6.117

GRAVY (calculated)

-0.497

Length

907 amino acids

Sequence
(BLAST)

001: MEEEDQVVIS SSDSEDSSDS YEEESQDSEG EYENSDCEDL AAVSPPSDAD RKFKNVNDLL RGNLVVQRQP LLPRVLSVSE GAAVCRKPFK PPCSHGYNTT
101: GQLSRRLSAR KRFVPWGSSS PVVVVLPTKL NESTTIEKDE EEEVVSLPPE VEPLVLWQLD ESDDAMRISV HPLLVRFLRP HQREGVQFMF DCVSGLHGSE
201: NINGCILADD MGLGKTLQSI TLLYTLLCQG FDGTPMVKKA IIVTPTSLVS NWEAEIKKWV GDRIQLIALC ESTRDDVLSG IDSFTRPRSA LQVLIISYET
301: FRMHSSKFGQ TGSCDLLICD EAHRLKNDQT LTNKALASLT CKRRVLLSGT PMQNDLEEFF AMVNFTNPGS LGDAAHFRHY FEAPIICGRE PTATEEEKNL
401: AAARSTELSS KVNQFILRRT NALLSNHLPP KIIEVVCCKM TTLQSTLYNH FISSKNLKRA LADNAKQTKV LAYITALKKL CNHPKLIYDT IKSKSPGTIG
501: FEDFLEFFPA EMFSGRSGAW TGGDGAWVEL SGKMHVLSRL LANLRRNTDD RIVLVSNYTQ TLDLFAQLCR ERRYPYLRLD GSTSISKRQK LVNRLNDPTK
601: DEFAFLLSSK AGGCGLNLIG ANRLVLFDPD WNPANDKQAA ARVWRDGQKK RVYVYRFLST GTIEEKVYQR QMSKEGLQKV IQHEQTDNST RQGNLLSTED
701: LRDLFSFHGD VRSEIHGKMS CSRCQNDASG TENTEEGNEN NLDDSACQTD QEDIGGFAND AGCLHSLKIS ERQVGTPLEE DLASWGHHFT SKSVPDTILQ
801: ASAGDEVTFV FTNQVDGKLI PIKSNPSPKP EVTELNRNQA VSNRGFNKPQ QRPREPLQPL SPNETNKRVK LSTYKRLHCT SNTDGAQMQM PLPRPNQVSV
901: NHDDDFV

Best Arabidopsis Sequence Match ( AT3G19210.1 )
(BLAST)

001: MEEEDEEILS SSDCDDSSDS YKDDSQDSEG ENDNPECEDL AVVSLSSDAD RKSKNVKDLL RGNLVVQRQP LLPRVLSVSD GAAVCRKPFK PPCSHGYDST
101: GQLSRRLSAR KRFVPWGSST PVVVALPTKL EASTNIERDE EEEVVCLPPD IEPLVLWQSE EDGMSNVTTI MVHSVLVKFL RPHQREGVQF MFDCVSGLHG
201: SANINGCILA DDMGLGKTLQ SITLLYTLLC QGFDGTPMVK KAIIVTPTSL VSNWEAEIKK WVGDRIQLIA LCESTRDDVL SGIDSFTRPR SALQVLIISY
301: ETFRMHSSKF CQSESCDLLI CDEAHRLKND QTLTNRALAS LTCKRRVLLS GTPMQNDLEE FFAMVNFTNP GSLGDAAHFR HYYEAPIICG REPTATEEEK
401: NLAADRSAEL SSKVNQFILR RTNALLSNHL PPKIIEVVCC KMTTLQSTLY NHFISSKNLK RALADNAKQT KVLAYITALK KLCNHPKLIY DTIKSGNPGT
501: VGFENCLEFF PAEMFSGRSG AWTGGDGAWV ELSGKMHVLS RLLANLRRKT DDRIVLVSNY TQTLDLFAQL CRERRYPFLR LDGSTTISKR QKLVNRLNDP
601: TKDEFAFLLS SKAGGCGLNL IGANRLVLFD PDWNPANDKQ AAARVWRDGQ KKRVYVYRFL STGTIEEKVY QRQMSKEGLQ KVIQHEQTDN STRQGNLLST
701: EDLRDLFSFH GDVRSEIHEK MSCSRCQNDA SGTENIEEGN ENNVDDNACQ IDQEDIGGFA KDAGCFNLLK NSERQVGTPL EEDLGSWGHH FTSKSVPDAI
801: LQASAGDEVT FVFTNQVDGK LVPIESNVSP KTVESEEHNR NQPVNKRAFN KPQQRPREPL QPLSLNETTK RVKLSTYKRL HGNSNIDDAQ IKMSLQRPNL
901: VSVNHDDDFV

Arabidopsis Description

CHR25Protein CHROMATIN REMODELING 25 [Source:UniProtKB/Swiss-Prot;Acc:Q0PCS3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.