Factsheet for VIT_03s0063g00580.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_11s0016g00340.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G19210.1	VIT_11s0016g00340.t01	AT5G20850.1	17227544
AT3G19210.1	VIT_11s0016g00340.t01	AT5G20850.1	18430956

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g056400.2.1	Tomato	cytosol, nucleus, plastid	26.48	70.19
KRH77966	Soybean	nucleus	63.29	68.78
CDX99258	Canola	nucleus	62.78	67.7
AT3G19210.1	Thale cress	nucleus	62.88	67.58
CDX92308	Canola	nucleus	62.88	67.51
Bra022395.1-P	Field mustard	nucleus	62.88	67.36
HORVU1Hr1G071540.2	Barley	nucleus	18.71	67.03
HORVU7Hr1G119270.3	Barley	nucleus	19.02	66.43
Solyc04g056410.2.1	Tomato	nucleus	37.93	63.2
GSMUA_Achr5P24600_001	Banana	nucleus	60.12	62.95
EES07568	Sorghum	nucleus	59.92	60.41
Os02t0762800-00	Rice	nucleus	60.12	60.0
TraesCS6A01G321200.1	Wheat	nucleus	59.51	59.81
Zm00001d018151_P003	Maize	nucleus	59.2	59.81
HORVU6Hr1G078680.2	Barley	nucleus	59.3	59.37
TraesCS6B01G351900.1	Wheat	nucleus	59.1	57.63
TraesCS6D01G300900.1	Wheat	cytosol	59.61	55.05
VIT_12s0028g03440.t01	Wine grape	plastid	19.02	21.28
VIT_04s0044g01680.t01	Wine grape	cytosol	18.2	17.07
VIT_02s0012g00110.t01	Wine grape	cytosol	11.15	16.9
VIT_03s0038g04290.t01	Wine grape	nucleus	3.48	15.38
VIT_06s0004g08480.t01	Wine grape	mitochondrion, plastid	10.22	14.68
VIT_07s0005g03670.t01	Wine grape	nucleus	17.69	14.1
VIT_14s0036g01460.t01	Wine grape	nucleus	19.63	13.0
VIT_03s0038g00030.t01	Wine grape	nucleus	11.45	11.78
VIT_13s0067g01950.t01	Wine grape	nucleus	11.04	8.51
VIT_15s0024g00350.t01	Wine grape	mitochondrion	17.18	8.31

Protein Annotations

MapMan:12.4.1.3.1	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	EMBL:AM460282	ProteinID:CAN70202	ProteinID:CAN70202.1
ProteinID:CCB56877	ProteinID:CCB56877.1	UniProt:F6HQC0	EMBL:FN596006	GO:GO:0000166	GO:GO:0000724
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009987	GO:GO:0010332	GO:GO:0045003
GO:GO:0051701	GO:GO:0071248	GO:GO:0071480	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR038718	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFscan:PS51192
PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF889	SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf
InterPro:SNF2_N	SUPFAM:SSF52540	UniParc:UPI0002108582	ArrayExpress:VIT_03s0063g00580	EnsemblPlantsGene:VIT_03s0063g00580	EnsemblPlants:VIT_03s0063g00580.t01
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3:+:4076753..4093973

Molecular Weight (calculated)

110088.0 Da

IEP (calculated)

6.067

GRAVY (calculated)

-0.534

Length

978 amino acids

Sequence
(BLAST)

001: MEEYDEEVPS SSDPSDSSDE FAGESEEEEE EENDDEERSA VKSPTSDEGR KSQNVDALLR GNLVLRRQSL LPRVLSVTDG AAVARKPFKP PFSNGYHDRN
101: DQLVHRLWAR KRFVPWGSSR PALVLITNRV NISSAAEKDV LEESVSLPAG IDPLVLWHPE ESEEQADNLM PIVVDPLLVR FLRPHQREGV QFMFDCVSGL
201: SSTANISGCI LADDMGLGKT LQSITLLYTL LRQGFDGKAM VKKAIIVTPT SLVSNWEAEI KKWVGERVQL VALCESTRDD VVFGIDSFTS PHSPLQVLIV
301: SYETFRMHSS KFSHSGSCDL LICDEAHRLK NDQTLTNRAL AALACKRRVL LSGTPMQNDL EEFFAMVNFT NPGILGDATY FRRYYETPII CGREPTAAEE
401: EKKLGAERSA ELSSTVNQFI LRRTNALLSN HLPPKIVEVV CCRLSPLQSE LYNHFIHSKN VKKVINEEMK QSKILAYITA LKKLCNHPKL IYDTVKSGNQ
501: GTSGFEDCMR FFPPEMFSGR SGAWTGGEGI WVELSGKMHV LARLLAHLRQ KTDDRIVLVS NYTQTLDLFA QLCRERRYPY LRLDGTTSIN KRQKLVNRFS
601: DPLKDEFVFL LSSKAGGCGL NLIGGNRLVL FDPDWNPAND KQVFQRQMSK EGLQKVIQQE QKDSLKTQGN FLSTEDLRDL FSFHENVRSE IHEKMNCNRC
701: QNYDERPESV REEDGFESKN EGCQSYQMDC DDIGGFAGIT GCLHKLKRSE KQVGTALEED LGSWGHHFFS TSVPDAIFQA SAGDEVTFVF TNQVDGKLVP
801: VESKVRANMQ GVEANKNQSD KRGKLLQKPT LLSKHQQSAP PVSNKGDSIT SISSSSSKPF HLADTQHPIK KHETNYREAP VSSDFEFSVK NNNMTSADEI
901: FFKGMLLPTK PKMTLRDELL VDDDDDDGFK DVLPRLQKSS GRWKQRFGLK RGDKSDGTLE RVVEEKPETQ LEGARLQN

Best Arabidopsis Sequence Match ( AT3G19210.1 )
(BLAST)

001: MEEEDEEILS SSDCDDSSDS YKDDSQDSEG ENDNPECEDL AVVSLSSDAD RKSKNVKDLL RGNLVVQRQP LLPRVLSVSD GAAVCRKPFK PPCSHGYDST
101: GQLSRRLSAR KRFVPWGSST PVVVALPTKL EASTNIERDE EEEVVCLPPD IEPLVLWQSE EDGMSNVTTI MVHSVLVKFL RPHQREGVQF MFDCVSGLHG
201: SANINGCILA DDMGLGKTLQ SITLLYTLLC QGFDGTPMVK KAIIVTPTSL VSNWEAEIKK WVGDRIQLIA LCESTRDDVL SGIDSFTRPR SALQVLIISY
301: ETFRMHSSKF CQSESCDLLI CDEAHRLKND QTLTNRALAS LTCKRRVLLS GTPMQNDLEE FFAMVNFTNP GSLGDAAHFR HYYEAPIICG REPTATEEEK
401: NLAADRSAEL SSKVNQFILR RTNALLSNHL PPKIIEVVCC KMTTLQSTLY NHFISSKNLK RALADNAKQT KVLAYITALK KLCNHPKLIY DTIKSGNPGT
501: VGFENCLEFF PAEMFSGRSG AWTGGDGAWV ELSGKMHVLS RLLANLRRKT DDRIVLVSNY TQTLDLFAQL CRERRYPFLR LDGSTTISKR QKLVNRLNDP
601: TKDEFAFLLS SKAGGCGLNL IGANRLVLFD PDWNPANDKQ AAARVWRDGQ KKRVYVYRFL STGTIEEKVY QRQMSKEGLQ KVIQHEQTDN STRQGNLLST
701: EDLRDLFSFH GDVRSEIHEK MSCSRCQNDA SGTENIEEGN ENNVDDNACQ IDQEDIGGFA KDAGCFNLLK NSERQVGTPL EEDLGSWGHH FTSKSVPDAI
801: LQASAGDEVT FVFTNQVDGK LVPIESNVSP KTVESEEHNR NQPVNKRAFN KPQQRPREPL QPLSLNETTK RVKLSTYKRL HGNSNIDDAQ IKMSLQRPNL
901: VSVNHDDDFV

Arabidopsis Description

CHR25Protein CHROMATIN REMODELING 25 [Source:UniProtKB/Swiss-Prot;Acc:Q0PCS3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.