Factsheet for VIT_12s0028g03440.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH25617	Soybean	nucleus	72.31	72.64
PGSC0003DMT400082782	Potato	plastid	73.57	72.41
Solyc07g053870.2.1	Tomato	plastid	72.54	71.48
GSMUA_Achr7P00330_001	Banana	plastid	67.62	68.01
AT1G03750.1	Thale cress	plastid	66.59	67.52
Os05t0247900-01	Rice	plastid	62.01	63.32
TraesCS2A01G185300.1	Wheat	plastid	62.59	63.09
TraesCS2B01G222000.1	Wheat	plastid	62.47	62.98
TraesCS2D01G202400.1	Wheat	plastid	62.13	62.63
HORVU2Hr1G037590.4	Barley	plastid	62.81	62.6
EER91354	Sorghum	plastid	63.27	62.27
Zm00001d013828_P002	Maize	plastid	62.47	62.12
CDY37413	Canola	mitochondrion, nucleus	66.36	36.2
CDY32510	Canola	mitochondrion, nucleus	66.25	36.05
Bra032544.1-P	Field mustard	nucleus	66.36	35.3
VIT_02s0012g00110.t01	Wine grape	cytosol	14.65	19.84
VIT_03s0063g00580.t01	Wine grape	nucleus	21.28	19.02
VIT_07s0005g03670.t01	Wine grape	nucleus	25.51	18.17
VIT_04s0044g01680.t01	Wine grape	cytosol	21.51	18.02
VIT_06s0004g08480.t01	Wine grape	mitochondrion, plastid	13.27	17.03
VIT_03s0038g04290.t01	Wine grape	nucleus	3.89	15.38
VIT_14s0036g01460.t01	Wine grape	nucleus	22.08	13.07
VIT_03s0038g00030.t01	Wine grape	nucleus	14.07	12.93
VIT_13s0067g01950.t01	Wine grape	nucleus	14.65	10.09
VIT_15s0024g00350.t01	Wine grape	mitochondrion	21.62	9.35

Protein Annotations

MapMan:12.4.1.4.3	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	EMBL:AM467863	ProteinID:CAN79218	ProteinID:CAN79218.1
ProteinID:CBI21870	ProteinID:CBI21870.3	UniProt:E0CTF5	EMBL:FN595235	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0016020	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR038718	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF804	SMART:SM00487	SMART:SM00490
InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540	UniParc:UPI0001984379	ArrayExpress:VIT_12s0028g03440	EnsemblPlantsGene:VIT_12s0028g03440
EnsemblPlants:VIT_12s0028g03440.t01	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr12:-:4227694..4234100

Molecular Weight (calculated)

99299.1 Da

IEP (calculated)

7.863

GRAVY (calculated)

-0.447

Length

874 amino acids

Sequence
(BLAST)

001: MSLNTLKETL RQCTNPSSST LISYTNSSIS REIDPINPRK PPKSSLSKQL QRLQDPFSLP QIQPRNQQKQ SLDHEEEEEV EAQEGFEKPQ LGFLQFDLTG
101: PFVPLVLSSD DEVPVIQVPA SINHRLLEHQ REGVKFLYNL YKHNHGGVLG DDMGLGKTIQ TIAFLAAMFG KDGECGDSTI LKGNQMGKKG PVLIVCPTSV
201: IHNWESEFSK WATFSVSVYH GANRDLILDK LEAHGVEILI TSFDTYRIHG SILSEVPWEI VVIDEAHRLK NEKSKLYTAC LEIKTCKRIG LTGTIMQNKI
301: MELFNLFDWV APGCLGTREH FREFYDEPLK HGQRSTAPER FVRVADERKQ HLVAVLHKYL LRRTKEETIG HLMMGKEDNV VFCAMSELQK RVYTRMLQLP
401: DIQCLINKDL PCSCGSPLTQ VECCKRTVPN GVIWSYLHRD NPDGCDSCPF CLVLPCLVKL LQISNHLELI KPNPRDDPDK QRKDAEFASA VFGTDIDLVG
501: GNTQSESFMG LSDVKHCGKM RALEKLMLSW VSHGDKILLF SYSVRMLDIL EKFLIRKGYC FSRLDGSTPT NLRQSLVDDF NSSPSKQVFL ISTRAGGLGL
601: NLVSANRVVI FDPNWNPAQD LQAQDRSFRY GQKRHVVVFR LLAAGSLEEL VYSRQVYKQQ LSNIAISGKM EKRYFEGVQD CKEFQGELFG ICNLFRDLSD
701: KLFTSEIIEL HENQRQDHGH NRSTKMDLSE LGSYFVQSKE AIETVSSAPE SRKPKYFKSD TTLEDLGIVY AHRNEDIVNF GPTIQGKEEA SVAQHDGQRQ
801: SHIPVAEKRR PNGVSRKENA SSAKDWKKRE FSLLAQFMGM KEVEFSKWLL AAAPSEREKV LQDYKKRKKK IPNG

Best Arabidopsis Sequence Match ( AT1G03750.1 )
(BLAST)

001: MSLLHTFKET LKPCGSFPSS SSLRVSSTQE LEPSRKPPKS SLSQQLLRLD DSYFLPSKHE SKISKTQVED FDHNEDDHKR NIKFDEEEVD EDDERSIEFG
101: RPGLSRAEFD YSGPYEPLML SSIGEIPIIH VPASINCRLL EHQREGVKFM YNLYKNNHGG ILGDDMGLGK TIQTIAFLAA VYGKDGDAGE SCLLESDKGP
201: VLIICPSSII HNWESEFSRW ASFFKVSVYH GSNRDMILEK LKARGVEVLV TSFDTFRIQG PVLSGINWEI VIADEAHRLK NEKSKLYEAC LEIKTKKRIG
301: LTGTVMQNKI SELFNLFEWV APGSLGTREH FRDFYDEPLK LGQRATAPER FVQIADKRKQ HLGSLLRKYM LRRTKEETIG HLMMGKEDNV VFCQMSQLQR
401: RVYQRMIQLP EIQCLVNKDN PCACGSPLKQ SECCRRIVPD GTIWSYLHRD NHDGCDSCPF CLVLPCLMKL QQISNHLELI KPNPKDEPEK QKKDAEFVST
501: VFGTDIDLLG GISASKSFMD LSDVKHCGKM RALEKLMASW ISKGDKILLF SYSVRMLDIL EKFLIRKGYS FARLDGSTPT NLRQSLVDDF NASPSKQVFL
601: ISTKAGGLGL NLVSANRVVI FDPNWNPSHD LQAQDRSFRY GQKRHVVVFR LLSAGSLEEL VYTRQVYKQQ LSNIAVAGKM ETRYFEGVQD CKEFQGELFG
701: ISNLFRDLSD KLFTSDIVEL HRDSNIDENK KRSLLETGVS EDEKEEEVMC SYKPEMEKPI LKDLGIVYAH RNEDIINIGE TTTSTSQRLN GDGNSADRKK
801: KKRKGCSEEE DMSSSNREQK REKYKMLAEF KGMEILEFSR WVLSASPFDR EKLLQDFLER VK

Arabidopsis Description

SWI2Switch 2 [Source:UniProtKB/Swiss-Prot;Acc:F4I2H2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.