Factsheet for VIT_06s0004g08480.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

nucleus 2
plastid 2
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0038g04290.t01	Wine grape	nucleus	22.61	69.68
VIT_03s0038g00030.t01	Wine grape	nucleus	85.9	61.51
Os07t0434500-01	Rice	cytoskeleton, cytosol, nucleus	55.36	56.1
HORVU2Hr1G024970.1	Barley	nucleus	25.4	52.91
KRH27453	Soybean	cytosol	68.58	52.89
Os08t0243866-00	Rice	endoplasmic reticulum	46.4	48.92
KRH20806	Soybean	cytosol	66.81	47.74
AT2G16390.2	Thale cress	nucleus	61.97	47.36
CDX89710	Canola	nucleus	58.44	46.06
Bra021841.1-P	Field mustard	cytosol	51.4	45.81
Solyc01g109970.2.1	Tomato	extracellular	60.79	45.65
PGSC0003DMT400079488	Potato	nucleus	60.5	44.54
TraesCS2B01G208700.1	Wheat	cytosol	55.07	40.94
Os06t0255700-01	Rice	cytosol	56.68	40.8
TraesCS2D01G189900.1	Wheat	nucleus	54.63	39.08
Zm00001d024677_P003	Maize	cytosol	53.89	38.63
TraesCS5A01G340400.1	Wheat	nucleus	54.04	38.41
TraesCS5D01G344400.1	Wheat	nucleus	53.89	38.31
HORVU2Hr1G034330.2	Barley	mitochondrion, nucleus, plastid	54.33	37.95
KXG24379	Sorghum	cytosol	53.45	37.53
HORVU5Hr1G085320.1	Barley	plastid	53.6	37.44
Zm00001d049605_P037	Maize	cytosol	53.16	37.05
TraesCS2A01G140400.2	Wheat	cytosol	51.54	36.72
TraesCS2B01G164300.3	Wheat	nucleus	51.4	36.61
TraesCS4D01G279200.1	Wheat	cytosol	50.95	36.49
TraesCS4B01G280600.1	Wheat	nucleus	50.66	36.13
TraesCS2A01G182200.1	Wheat	plastid	54.77	35.9
EER92800	Sorghum	nucleus, plastid	49.63	35.77
TraesCS4A01G022800.1	Wheat	mitochondrion, plastid	50.66	34.64
GSMUA_Achr6P04530_001	Banana	nucleus	44.49	34.16
HORVU4Hr1G074230.3	Barley	nucleus, plastid	50.07	33.24
Os03t0165266-00	Rice	nucleus	51.98	32.96
Bra000888.1-P	Field mustard	cytosol	21.29	31.59
VIT_02s0012g00110.t01	Wine grape	cytosol	27.61	29.15
Os08t0289400-00	Rice	cytosol, nucleus	22.32	28.79
TraesCS2D01G143100.1	Wheat	cytosol	22.91	25.16
VIT_13s0067g01950.t01	Wine grape	nucleus	27.02	14.5
VIT_12s0028g03440.t01	Wine grape	plastid	17.03	13.27
VIT_04s0044g01680.t01	Wine grape	cytosol	18.5	12.08
VIT_03s0063g00580.t01	Wine grape	nucleus	14.68	10.22
VIT_14s0036g01460.t01	Wine grape	nucleus	21.44	9.88
VIT_07s0005g03670.t01	Wine grape	nucleus	16.01	8.88
VIT_15s0024g00350.t01	Wine grape	mitochondrion	14.24	4.8

Protein Annotations

MapMan:12.4.1.3.3	MapMan:12.5.1.14.1	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	ProteinID:CCB43375	ProteinID:CCB43375.1
UniProt:F6GU59	EMBL:FN594951	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0015074	GO:GO:0016491	GO:GO:0016787	GO:GO:0055114
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR038718	InterPro:P-loop_NTPase
PFAM:PF00176	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF807
SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540	TIGR:TC65416
UniParc:UPI000210A5E8	ArrayExpress:VIT_06s0004g08480	EnsemblPlantsGene:VIT_06s0004g08480	EnsemblPlants:VIT_06s0004g08480.t01	:	:

Description

No Description!

Coordinates

chr6:-:9417922..9420749

Molecular Weight (calculated)

77212.8 Da

IEP (calculated)

9.516

GRAVY (calculated)

-0.241

Length

681 amino acids

Sequence
(BLAST)

001: MEAKRFVLVF PGRKGLLGGW GILVGKLCNL GVTLGSQVSK GVPLVVGRSK EGTLTRVSFV MSFADKVKKG LEALGEVVWF QMGEKEVKRS RTYMYEPRNT
101: KDREPTDDPS DGLRFSEHSL IVTEIHAHPR HSMQMKPHQV EGFNFLVSNL VADNPGGCIL AHAPGSGKTF MIISFMQSFL AKYPQARPLV VLPKGILATW
201: KKEFLTWQVE DIPLYDFYSV KADSRPQQLE VLKQWVAEKS ILFLGYKQFS SIVCGDGASK AAMACQEILL KAPQILILDE GHTPRNENTD VLYSLAKVQT
301: PRKVVLSGTL YQNHVKEVFN ILNLVRPKFL KLESSRAIVK RIMSKVDIMG VRKQLKSNAA DAFYDLVENT LQKDDNFRRK ITVIQDLREM TSKVLHYYKG
401: DFLDELPGLV DFTVLLNLSA RQKKEVGNLN KFERKFKKNS VGSAVYLHPQ LKYFAEKLAA NESKTDEMTY QKKMDEILEQ LDVREGVKVK FFLNVLALCQ
501: SAGEKLLVFS QYLLPLRFLE KLTMKVNGWS SGKEIFVISG ESSSEQREWS MERFNTSPDA RVFFGSIKAC GEGISLVGAS RVLILDVHLN PSVTRQAIGR
601: AFRPGQKKKV HVYKLVAADS PEEEDHNTCF KKELISKMWF EWNEYCGNHE FEAETVNVSD SGDLFLESPL LREDVTVLYK R

Best Arabidopsis Sequence Match ( AT2G16390.2 )
(BLAST)

001: MDILQTDQAS SNGYYKNVHK RKQNQVDDGP EAKRVKSSAK VIDYSNPFAV SNMLEALDSG KFGSVSKELE EIADMRMDLV KRSIWLYPSL AYTVFEAEKT
101: MDNQQVVEGV INLDDDDDDD TDVEKKALCV VPSSSEIVLL DSDDEDNERQ RPMYQFQSTL VQHQKNQGDV TPLIPQCSFE EVDLGRGKEM PSAIKAIVEG
201: QTSRGKVLPI ENGVVNEKGV YVGVEEDDSD NESEAADEDL GNIWNEMALS IECSKDVARE TSHKEKADVV EDCEHSFILK DDMGYVCRVC GVIEKSILEI
301: IDVQFTKAKR NTRTYASETR TKRFGESDNE LKFSEEGLMI GGLAAHPTHA AEMKPHQIEG FQFLCSNLVA DDPGGCIMAH APGSGKTFMI ISFMQSFLAK
401: YPQAKPLVVL PKGILPTWKK EFVRWQVEDI PLLDFYSAKA ENRAQQLSIL KQWMEKKSIL FLGYQQFSTI VCDDTTDSLS CQEILLKVPS ILILDEGHTP
501: RNEDTNLLQS LAQVQTPRKV VLSGTLYQNH VKEVFNILNL VRPKFLKLDT SKSAVKRILA YTPCDVRGRL TGSNSDMASM FNETVEHTLQ KSEDFTVKIK
601: VIQDLREMTK KVLHYYKGDF LDELPGLADF TVVLNLSPKQ LNEVKKLRRE KRKFKVSAVG SAIYLHPKLK VFSDKSDDVS DTTMDEMVEK LDLNEGVKAK
701: FFLNLINLCD SAGEKLLVFS QYLIPLKFLE RLAALAKGWK LGKEVFVLTG NTSSEQREWS METFNSSPDA KIFFGSIKAC GEGISLVGAS RILILDVPLN
801: PSVTRQAIGR AFRPGQKKMV HAYRLIAGSS PEEEDHNTCF KKEVISKMWF EWNEYCGYQN FEVETIDVDE AGDTFLESPA LREDIRVLYK R

Arabidopsis Description

DRD1SNF2 domain-containing protein / helicase domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8B0G3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.