Factsheet for Os08t0289400-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0255700-01	Rice	cytosol	90.53	50.53
VIT_03s0038g04290.t01	Wine grape	nucleus	20.83	49.77
Os07t0434500-01	Rice	cytoskeleton, cytosol, nucleus	54.92	43.15
Zm00001d049605_P037	Maize	cytosol	60.98	32.96
Zm00001d024677_P003	Maize	cytosol	59.28	32.95
KXG24379	Sorghum	cytosol	60.23	32.78
TraesCS2B01G208700.1	Wheat	cytosol	56.63	32.64
TraesCS5D01G344400.1	Wheat	nucleus	57.2	31.52
TraesCS2D01G189900.1	Wheat	nucleus	56.82	31.51
TraesCS5A01G340400.1	Wheat	nucleus	57.01	31.42
HORVU5Hr1G085320.1	Barley	plastid	57.77	31.28
HORVU2Hr1G034330.2	Barley	mitochondrion, nucleus, plastid	57.39	31.08
Bra000888.1-P	Field mustard	cytosol	25.95	29.85
TraesCS2A01G182200.1	Wheat	plastid	56.25	28.59
Os08t0243866-00	Rice	endoplasmic reticulum	32.58	26.63
VIT_06s0004g08480.t01	Wine grape	mitochondrion, plastid	28.79	22.32
KRH27453	Soybean	cytosol	36.74	21.97
GSMUA_Achr6P04530_001	Banana	nucleus	36.36	21.65
VIT_03s0038g00030.t01	Wine grape	nucleus	36.55	20.29
Bra021841.1-P	Field mustard	cytosol	28.98	20.03
KRH20806	Soybean	cytosol	35.98	19.94
AT2G16390.2	Thale cress	nucleus	33.33	19.75
Solyc01g109970.2.1	Tomato	extracellular	33.33	19.4
PGSC0003DMT400079488	Potato	nucleus	33.71	19.24
CDX89710	Canola	nucleus	29.73	18.17
Os03t0165266-00	Rice	nucleus	32.95	16.2
Os01t0636700-01	Rice	cytoskeleton, cytosol, nucleus	9.09	10.23
Os02t0650800-00	Rice	cytosol	17.8	10.03
Os04t0692750-01	Rice	cytosol	10.42	5.57
Os07t0692600-01	Rice	mitochondrion	4.55	5.05
Os02t0762800-00	Rice	nucleus	9.28	5.0
Os10t0457700-01	Rice	nucleus	11.93	4.78
Os05t0247900-01	Rice	plastid	7.39	4.56
Os01t0102800-01	Rice	cytosol, nucleus, plastid	7.58	4.36
Os05t0392400-01	Rice	cytosol, nucleus	3.6	4.22
Os07t0692500-01	Rice	cytosol	4.17	3.87
Os02t0161200-01	Rice	nucleus	1.7	2.11
Os02t0161300-01	Rice	extracellular	1.14	1.17
Os04t0692700-01	Rice	nucleus	0.0	0.0
Os02t0762600-01	Rice	cytosol	0.0	0.0
Os07t0692401-00	Rice	mitochondrion	0.0	0.0

Protein Annotations

EnsemblPlants:Os08t0289400-00	EnsemblPlantsGene:Os08g0289400	Gene3D:3.40.50.10810	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:IPR014001	InterPro:IPR038718	InterPro:P-loop_NTPase	InterPro:SNF2-like_sf
InterPro:SNF2_N	PANTHER:PTHR10799	PANTHER:PTHR10799:SF807	PFAM:PF00176	ProteinID:BAT04748.1	SEG:seg
SMART:SM00487	SUPFAM:SSF52540	UniParc:UPI0003939624	UniProt:A0A0P0XE56	MapMan:35.1	:

Description

SNF2-related domain containing protein. (Os08t0289400-00)

Coordinates

chr8:-:11512090..11528238

Molecular Weight (calculated)

60346.3 Da

IEP (calculated)

5.523

GRAVY (calculated)

-0.573

Length

528 amino acids

Sequence
(BLAST)

001: PLEWMQKQKD SSAIIVLDSD DEDEYTEGCE QLTSENNKEQ APSGPTSPYT TWIVSSTKDQ VNGTLHVDGV QSTQIVPYGQ NAPLINQFPL QTSWQPSIQY
101: ERVILQKRPE EQRVQDLVAA SHAEKIAETQ VLLTLPTLPT ERKRRKTEPT TLVDVDGGTN LGKRKRKNHQ NQAAVDSNLD LQQNDVPSQS YRTMIEEEKP
201: VKESEGLEDL WKDFSLAAEC TKLDTNEDMS NEKDVDDENE MDDDCNHDIR IHEDLGHVCR ICGMIVRKAE TIIDYQWKKA SRTRTNYYES RSKDADEIDT
301: GAVKVSEDFI VSDIAIHPRH AKQMRPHQLE GFSFLVKNLV GDKPGGCILA HAPGSGKTFM LISFIQSFLA KYPSARPLVV LPKGIGSTWK REFQWWQVED
401: IPLYDFYSVK ADKRVEQLEV LKYWEAQMSI LFLGYKQFSR IICGDGDGNI AAACWDRLLM VPNLLILDEG HTPRNRETDV LASLKRHHAK WSCLVHFSRT
501: TFRKCLTSWT LCTLSFSRWN RPVLLLDV

Best Arabidopsis Sequence Match ( AT2G16390.2 )
(BLAST)

001: MDILQTDQAS SNGYYKNVHK RKQNQVDDGP EAKRVKSSAK VIDYSNPFAV SNMLEALDSG KFGSVSKELE EIADMRMDLV KRSIWLYPSL AYTVFEAEKT
101: MDNQQVVEGV INLDDDDDDD TDVEKKALCV VPSSSEIVLL DSDDEDNERQ RPMYQFQSTL VQHQKNQGDV TPLIPQCSFE EVDLGRGKEM PSAIKAIVEG
201: QTSRGKVLPI ENGVVNEKGV YVGVEEDDSD NESEAADEDL GNIWNEMALS IECSKDVARE TSHKEKADVV EDCEHSFILK DDMGYVCRVC GVIEKSILEI
301: IDVQFTKAKR NTRTYASETR TKRFGESDNE LKFSEEGLMI GGLAAHPTHA AEMKPHQIEG FQFLCSNLVA DDPGGCIMAH APGSGKTFMI ISFMQSFLAK
401: YPQAKPLVVL PKGILPTWKK EFVRWQVEDI PLLDFYSAKA ENRAQQLSIL KQWMEKKSIL FLGYQQFSTI VCDDTTDSLS CQEILLKVPS ILILDEGHTP
501: RNEDTNLLQS LAQVQTPRKV VLSGTLYQNH VKEVFNILNL VRPKFLKLDT SKSAVKRILA YTPCDVRGRL TGSNSDMASM FNETVEHTLQ KSEDFTVKIK
601: VIQDLREMTK KVLHYYKGDF LDELPGLADF TVVLNLSPKQ LNEVKKLRRE KRKFKVSAVG SAIYLHPKLK VFSDKSDDVS DTTMDEMVEK LDLNEGVKAK
701: FFLNLINLCD SAGEKLLVFS QYLIPLKFLE RLAALAKGWK LGKEVFVLTG NTSSEQREWS METFNSSPDA KIFFGSIKAC GEGISLVGAS RILILDVPLN
801: PSVTRQAIGR AFRPGQKKMV HAYRLIAGSS PEEEDHNTCF KKEVISKMWF EWNEYCGYQN FEVETIDVDE AGDTFLESPA LREDIRVLYK R

Arabidopsis Description

DRD1SNF2 domain-containing protein / helicase domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8B0G3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.