Factsheet for Os05t0392400-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g077650.1.1	Tomato	cytosol	7.56	65.38
PGSC0003DMT400033315	Potato	nucleus	15.56	48.28
Solyc08g077580.1.1	Tomato	cytosol	17.78	46.24
Solyc01g068300.1.1	Tomato	cytosol	38.0	43.85
PGSC0003DMT400096321	Potato	nucleus	11.56	41.6
PGSC0003DMT400085993	Potato	cytosol	13.33	35.71
CDY29038	Canola	nucleus	13.78	35.23
CDY59589	Canola	nucleus	13.78	35.23
VIT_02s0012g00110.t01	Wine grape	cytosol	49.56	34.57
Solyc08g062000.1.1	Tomato	cytosol	29.11	33.5
Solyc08g061410.1.1	Tomato	cytosol	32.0	32.8
Solyc08g061990.1.1	Tomato	mitochondrion	27.78	32.47
Solyc08g061350.1.1	Tomato	mitochondrion	5.11	32.39
Solyc08g062070.1.1	Tomato	cytosol	9.56	32.33
Solyc08g061340.1.1	Tomato	cytosol	15.11	30.49
CDX77430	Canola	nucleus	44.67	29.87
GSMUA_Achr7P06840_001	Banana	nucleus	61.33	29.27
Os07t0692600-01	Rice	mitochondrion	30.89	29.26
Solyc08g077610.1.1	Tomato	nucleus	43.11	29.0
Zm00001d038113_P001	Maize	mitochondrion, nucleus	91.78	28.78
Solyc08g077590.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	11.11	28.74
Solyc02g033050.1.1	Tomato	nucleus	39.78	28.46
OQU77943	Sorghum	mitochondrion	92.0	28.4
TraesCS1D01G245400.1	Wheat	nucleus	93.56	28.35
TraesCS1A01G245700.1	Wheat	mitochondrion, nucleus	93.78	28.34
TraesCS1B01G256700.1	Wheat	mitochondrion, nucleus	93.56	28.2
HORVU1Hr1G062970.3	Barley	mitochondrion	92.67	28.14
Solyc01g068320.1.1	Tomato	cytosol	41.33	27.84
Solyc04g054440.1.1	Tomato	nucleus	40.44	27.79
PGSC0003DMT400017302	Potato	nucleus	36.22	26.16
KRH39939	Soybean	nucleus	34.89	25.45
PGSC0003DMT400088837	Potato	cytosol	10.44	24.87
Solyc08g077690.2.1	Tomato	nucleus	40.22	24.43
Os02t0650800-00	Rice	cytosol	50.0	24.01
PGSC0003DMT400090992	Potato	mitochondrion	12.89	23.67
Solyc01g049740.1.1	Tomato	endoplasmic reticulum, extracellular	12.44	23.24
Solyc01g060460.1.1	Tomato	nucleus	39.11	23.13
CDX93009	Canola	nucleus	44.89	20.82
CDX94823	Canola	nucleus	44.67	20.64
Solyc03g061640.1.1	Tomato	cytosol	7.56	20.48
PGSC0003DMT400004629	Potato	nucleus	39.56	19.96
Os07t0434500-01	Rice	cytoskeleton, cytosol, nucleus	29.78	19.94
Solyc08g077600.1.1	Tomato	cytosol	17.33	19.85
CDY66441	Canola	nucleus	44.67	19.46
Bra015035.1-P	Field mustard	nucleus	44.67	19.29
Bra001944.1-P	Field mustard	nucleus	44.89	18.95
PGSC0003DMT400085944	Potato	cytosol	9.78	18.72
Os08t0243866-00	Rice	endoplasmic reticulum	26.44	18.42
PGSC0003DMT400004673	Potato	nucleus	36.67	18.01
KRH46527	Soybean	nucleus	44.67	17.51
KRH23851	Soybean	mitochondrion, nucleus	45.33	17.5
AT3G24340.1	Thale cress	nucleus	43.33	17.23
KRH46528	Soybean	cytosol, extracellular, nucleus	44.67	16.13
PGSC0003DMT400004672	Potato	nucleus	35.56	16.08
PGSC0003DMT400038789	Potato	nucleus	39.33	16.0
CDY47279	Canola	nucleus	46.67	15.71
PGSC0003DMT400017313	Potato	nucleus	41.11	15.35
CDY10115	Canola	nucleus	46.67	15.23
AT1G05490.1	Thale cress	mitochondrion, nucleus	46.89	14.96
Os06t0255700-01	Rice	cytosol	29.78	14.16
Bra015430.1-P	Field mustard	nucleus	46.67	13.27
Solyc08g077670.1.1	Tomato	cytosol	13.33	13.24
Os03t0165266-00	Rice	nucleus	27.56	11.55
Os01t0102800-01	Rice	cytosol, nucleus, plastid	22.22	10.91
Os05t0247900-01	Rice	plastid	20.22	10.63
Os04t0692750-01	Rice	cytosol	21.11	9.63
PGSC0003DMT400037430	Potato	nucleus	13.56	9.08
Os02t0762800-00	Rice	nucleus	19.33	8.88
Os10t0457700-01	Rice	nucleus	23.78	8.11
Solyc08g061390.1.1	Tomato	cytosol	4.22	7.66
Os01t0636700-01	Rice	cytoskeleton, cytosol, nucleus	7.33	7.04
Os08t0289400-00	Rice	cytosol, nucleus	4.22	3.6
Solyc08g061370.1.1	Tomato	cytosol	1.33	3.45
Os02t0161200-01	Rice	nucleus	3.11	3.29
Os07t0692401-00	Rice	mitochondrion	0.22	0.21
Solyc08g062060.1.1	Tomato	nucleus	0.0	0.0
Os02t0762600-01	Rice	cytosol	0.0	0.0
Os02t0161300-01	Rice	extracellular	0.0	0.0
Os04t0692700-01	Rice	nucleus	0.0	0.0
Os07t0692500-01	Rice	cytosol	0.0	0.0

Protein Annotations

MapMan:16.10.1.2	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	ProteinID:BAF17365.1	ProteinID:BAS93860.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR038718	EnsemblPlantsGene:Os05g0392400
EnsemblPlants:Os05t0392400-01	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR10799	PANTHER:PTHR10799:SF937	UniProt:Q0DIF8	SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N
SUPFAM:SSF52540	UniParc:UPI0000E124AD	:	:	:	:

Description

SNF2-related domain containing protein. (Os05t0392400-01)

Coordinates

chr5:+:19097132..19099197

Molecular Weight (calculated)

51597.7 Da

IEP (calculated)

9.446

GRAVY (calculated)

-0.339

Length

450 amino acids

Sequence
(BLAST)

001: YGLYMKLTSE KVGCTGENKV RTILLENPGL LVLDEGHTPR NERSVIWKTL GKVKTEKRII LSGTPFQNNF LELYNILCLV RPRFGEMFLT KTRVGRRHCV
101: SKKQRDKFSD KYEKGVWASL TSNVTDDNAE KVRSILKPFV HIHNGTILRT LPGLRECVIV LKPLPLQKSI IRKVENVGSG NNFEHEYVIS LASTHPSLVN
201: AINMTEEEAS LIDKPMLERL RSNPYEGVKT RFVMEVVRLC EALKEKVLIF SQFIQPLELI KEHLRKIFKW REGKEILQMD GKILPRYRQN SIEVFNNPDS
301: DARVLLASTR ACCEGISLTG ASRVVLLDVV WNPAVGRQAI SRAFRIGQKK FVYTYNLITY GTGEGDKYDR QAEKDHLSKL VFSTEDEFSN VRNMLSKAEM
401: EHCSKLISED KVLEEMTSHD QLKGMFLKIH YPPTESNIVF TYNQIAPELS

Best Arabidopsis Sequence Match ( AT1G05490.1 )
(BLAST)

0001: MECIGKRVKS RSWQRLQAVN KRKKMETVAP VTSPPKKRRQ KKPKNYDSDI EDITPTCNDS VPPPQVSNMY SVPNNSVKES FSRIMRDLNV EKKSGPSSSR
0101: LTDGSEQNPC LKERSFRVSD LGVEKKCSPE ITDLDVGIPV PRFSKLKDVS EQKNTCLMQK SSPEIADLDL VISVPSSSVL KDVSEEIRFL KDKCSPEIRG
0201: LVLEKSVPGE IEILSDSESE TEARRRASAK KKLFEESSRI VESISDGEDS SSETDEEEEE NQDSEDNNTK DNVTVESLSS EDPSSSSSSS SSSSSSSSSS
0301: SSDDESYVKE VVGDNRDDDD LRKASSPIKR VSLVERKALV RYKRSGSSLT KPRERDNKIQ KLNHREEEKK ERQREVVRVV TKQPSNVVYT CAHCGKENTG
0401: NPESHSSFIR PHSIRDEIED VNNFASTNVS KYEDSVSINS GKTTGAPSRP EVENPETGKE LNTPEKPSIS RPEIFTTEKA IDVQVPEEPS RPEIYSSEKA
0501: KEVQAPEMPS RPEVFSSEKA KEIQVPEMPS IPEIQNSEKA KEVQANNRMG LTTPAVAEGL NKSVVTNEHI EDDSDSSISS GDGYESDPTL KDKEVKINNH
0601: SDWRILNGNN KEVDLFRLLV NSVWEKGQLG EEDEADELVS SAEDQSQEQA REDHRKYDDA GLLIIRPPPL IEKFGVEEPQ SPPVVSEIDS EEDRLWEELA
0701: FFTKSNDIGG NELFSNVEKN ISANETPAAQ CKKGKHDLCI DLEVGLKCMH CGFVEREIRS MDVSEWGEKT TRERRKFDRF EEEEGSSFIG KLGFDAPNNS
0801: LNEGCVSSEG TVWDKIPGVK SQMYPHQQEG FEFIWKNLAG TIMLNELKDF ENSDETGGCI MSHAPGTGKT RLTIIFLQAY LQCFPDCKPV IIAPASLLLT
0901: WAEEFKKWNI SIPFHNLSSL DFTGKENSAA LGLLMQKNAT ARSNNEIRMV KIYSWIKSKS ILGISYNLYE KLAGVKDEDK KTKMVREVKP DKELDDIREI
1001: LMGRPGLLVL DEAHTPRNQR SCIWKTLSKV ETQKRILLSG TPFQNNFLEL CNVLGLARPK YLERLTSTLK KSGMTVTKRG KKNLGNEINN RGIEELKAVM
1101: LPFVHVHKGS ILQSSLPGLR ECVVVLNPPE LQRRVLESIE VTHNRKTKNV FETEHKLSLV SVHPSLVSRC KISEKERLSI DEALLAQLKK VRLDPNQSVK
1201: TRFLMEFVEL CEVIKEKVLV FSQYIDPLKL IMKHLVSRFK WNPGEEVLYM HGKLEQKQRQ TLINEFNDPK SKAKVFLAST KACSEGISLV GASRVILLDV
1301: VWNPAVERQA ISRAYRIGQK RIVYTYHLVA KGTPEGPKYC KQAQKDRISE LVFACSSRHD KGKEKIAEAV TEDKVLDTMV EHSKLGDMFD NLIVQPKEAD
1401: LVEGFSILMP

Arabidopsis Description

CLSY3SNF2 domain-containing protein CLASSY 3 [Source:UniProtKB/Swiss-Prot;Acc:F4I8S3]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.