Factsheet for Os02t0161200-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 5
nucleus 3

Predictors

GFP

MS/MS

Papers

nucleus: 19621931
nucleus: 23303719
nucleus: 23777608

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 23303719 doi

Q He, L Chen, Y Xu, W Yu

State Key Laboratory for Agrobiotechnology, Institute of Plant Molecular Biology and Agricultural Biotechnology, School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0636700-01	Rice	cytoskeleton, cytosol, nucleus	4.69	4.26
Os02t0762800-00	Rice	nucleus	7.51	3.27
Os05t0392400-01	Rice	cytosol, nucleus	3.29	3.11
Os07t0692600-01	Rice	mitochondrion	3.29	2.95
Os01t0102800-01	Rice	cytosol, nucleus, plastid	6.34	2.94
Os04t0692750-01	Rice	cytosol	6.57	2.84
Os05t0247900-01	Rice	plastid	5.63	2.8
Os08t0243866-00	Rice	endoplasmic reticulum	4.23	2.79
Os07t0434500-01	Rice	cytoskeleton, cytosol, nucleus	4.23	2.68
Os06t0255700-01	Rice	cytosol	4.69	2.11
Os10t0457700-01	Rice	nucleus	6.34	2.05
GSMUA_Achr4P25080_001	Banana	nucleus	5.4	2.04
CDX95047	Canola	nucleus	7.04	2.03
CDX93550	Canola	nucleus	7.04	2.01
Os02t0161300-01	Rice	extracellular	2.35	1.96
Solyc04g050160.2.1	Tomato	nucleus	1.41	1.9
AT1G08600.3	Thale cress	nucleus	6.57	1.89
Os03t0165266-00	Rice	nucleus	4.69	1.86
Os02t0650800-00	Rice	cytosol	3.99	1.81
VIT_14s0036g01460.t01	Wine grape	nucleus	6.1	1.76
Os08t0289400-00	Rice	cytosol, nucleus	2.11	1.7
Os07t0692500-01	Rice	cytosol	2.11	1.58
Bra018612.1-P	Field mustard	nucleus	7.04	1.16
GSMUA_Achr4P25070_001	Banana	golgi	0.47	0.79
Os07t0692401-00	Rice	mitochondrion	0.23	0.21
Os04t0692700-01	Rice	nucleus	0.0	0.0
Os02t0762600-01	Rice	cytosol	0.0	0.0
KRH77275	Soybean	cytosol	0.0	0.0
KRH28211	Soybean	mitochondrion	0.0	0.0

Protein Annotations

MapMan:15.5.16	Gene3D:4.10.1000.10	EntrezGene:4328385	EMBL:AB117992	EMBL:AK065198	EMBL:AK122103
ProteinID:BAD25207.1	ProteinID:BAD28055.1	ProteinID:BAF07890.1	ProteinID:BAS77111.1	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0046872	InterPro:IPR000571	EnsemblPlantsGene:Os02g0161200
EnsemblPlants:Os02t0161200-01	PFAM:PF00642	PFscan:PS50103	PANTHER:PTHR38160	UniProt:Q6H7U2	SMART:SM00356
SUPFAM:SSF90229	UniParc:UPI00003B43B8	RefSeq:XP_015624712.1	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg

Description

ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 13Zinc finger, CCCH-type domain containing protein. (Os02t0161200-01)

Coordinates

chr2:+:3297230..3303782

Molecular Weight (calculated)

49080.1 Da

IEP (calculated)

9.670

GRAVY (calculated)

-1.325

Length

426 amino acids

Sequence
(BLAST)

001: MLGPPRRGPA YKTKLCALWQ RGNCNRDTCS FAHGHGDIRR PPSSRGAFTH HPGRRDYRAG DFRGRIDRRF SPRRRHSPGR ESRGHRPLYD RRPSSRERDS
101: SYSRSPSRKS ERRHEKKTDD GETNSSRSLS LSDNNDEKKK DKFSSGDEKE DHEKQLKQIR LDMEALRDDK TQMEVILDEK IDEVRKISSK VNDLEVQLRR
201: EKDECHRMTS KMKKFIKAHA RFLKAQEEVK RSQARFERLG DLLASDILKR GANEEGSSVN EDLNERSPNT AATKKRSIPY STSEEAKAVK KRRERDSDTM
301: TRSDKYRSDV TDFDKTSKGT EATKSLYLKK KLWEDEKSKL GANIFTEKVK GSPVRHVLPS TGMAAHAIDD LNEAIELEDR HESIDALLEN DADDKTRSPA
401: IPLQPPPVVQ NAYEQYEGDD EEVDVE

Best Arabidopsis Sequence Match ( AT3G21810.1 )
(BLAST)

001: MSGSSMYKTK LCILFNKTGD CSRPNCTFAH GNAELRRPGE SSFTGRRHNM DSDLRDRRHN MDSDLRDRLG RQFSPERRPS LDRSGRRVQR FSGHDNSMPF
101: ENRRDKDYRE NRRFDERRDY AGGLKVGNRI EDRAEDGRNK FHGYNNVLEE QLKDVEMDVK MLTDDKLRLE ASVERKAHEV DILTSRIQEL ETQLDREKDE
201: CRRITSSSKK FVKEYNRFLR AQDDLKRSEA RLQKLGNQLS TYLAGSEGNN RDVGLDIVSD EETNGRNLRT ACDPHNELQN TSSLSRKKHY VDQYTTKEPV
301: EDGLIGRGEE EKVENEKKRP PCWNMLSSKS YSEEESGAWN DEDTINRSSS KEDNWKRRRF SIGTSATDKV ILSTSMAARE FDDVAESEEE NPEAANGSPL
401: ISLPPPPPFR DAHVQRDEDD VNGDVMEQKK AYDDDSV

Arabidopsis Description

Zinc finger CCCH domain-containing protein 40 [Source:UniProtKB/Swiss-Prot;Acc:Q93XW7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.