CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28211	Soybean	mitochondrion	100.0	100.0
KRH39939	Soybean	nucleus	7.61	1.13
KRH46528	Soybean	cytosol, extracellular, nucleus	10.87	0.8
GSMUA_Achr4P25070_001	Banana	golgi	2.17	0.79
KRH23851	Soybean	mitochondrion, nucleus	8.7	0.69
Os07t0692600-01	Rice	mitochondrion	3.26	0.63
KRH46527	Soybean	nucleus	7.61	0.61
KRH19578	Soybean	nucleus	6.52	0.49
KRG88505	Soybean	endoplasmic reticulum, nucleus	5.43	0.41
KRH73247	Soybean	nucleus	5.43	0.38
KRH32203	Soybean	cytosol, mitochondrion, nucleus	1.09	0.36
KRH77966	Soybean	nucleus	3.26	0.33
KRG97679	Soybean	nucleus	4.35	0.32
VIT_14s0036g01460.t01	Wine grape	nucleus	3.26	0.2
TraesCS1D01G143000.1	Wheat	nucleus	3.26	0.2
TraesCS1A01G144000.3	Wheat	nucleus	3.26	0.2
Bra018612.1-P	Field mustard	nucleus	5.43	0.19
TraesCS1B01G161400.5	Wheat	nucleus	3.26	0.19
CDX95047	Canola	nucleus	2.17	0.14
KXG38419	Sorghum	nucleus	2.17	0.13
Zm00001d032801_P005	Maize	nucleus	2.17	0.13
HORVU1Hr1G038370.1	Barley	nucleus	2.17	0.13
CDX93550	Canola	nucleus	2.17	0.13
KRH59600	Soybean	cytosol, nucleus, plastid	1.09	0.13
KRH25617	Soybean	nucleus	1.09	0.11
KRH27453	Soybean	cytosol	1.09	0.11
KRH20806	Soybean	cytosol	1.09	0.1
KRH40956	Soybean	nucleus	1.09	0.1
KRH34128	Soybean	nucleus	1.09	0.09
AT1G08600.3	Thale cress	nucleus	1.09	0.07
KRG92726	Soybean	nucleus	1.09	0.07
Os07t0692401-00	Rice	mitochondrion	0.0	0.0
Os07t0692500-01	Rice	cytosol	0.0	0.0
KRH05276	Soybean	cytosol, nucleus	0.0	0.0
Solyc04g050160.2.1	Tomato	nucleus	0.0	0.0
Os02t0161200-01	Rice	nucleus	0.0	0.0
GSMUA_Achr4P25080_001	Banana	nucleus	0.0	0.0
KRH23760	Soybean	mitochondrion	0.0	0.0
KRH40039	Soybean	mitochondrion	0.0	0.0

Protein Annotations

EntrezGene:100499850	EntrezGene:100798254	MapMan:17.1.2.1.40	Gene3D:2.20.25.30	EMBL:ACUP02000669	EMBL:ACUP02006741
EMBL:BT089826	UniProt:C6SXD2	EnsemblPlantsGene:GLYMA_01G203600	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR011331
ProteinID:KRH28211.1	EnsemblPlants:KRH77275	ProteinID:KRH77275	ProteinID:KRH77275.1	HAMAP:MF_00327	PFAM:PF01780
PANTHER:PTHR43931	PANTHER:PTHR43931:SF1	InterPro:Ribosomal_L37ae	InterPro:Ribosomal_L37ae/L37e	InterPro:Ribosomal_zn-bd	SUPFAM:SSF57829
TIGRFAMs:TIGR00280	UniParc:UPI0001704D8D	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:53675570..53677282

Molecular Weight (calculated)

10211.6 Da

IEP (calculated)

10.960

GRAVY (calculated)

-0.543

Length

92 amino acids

Sequence
(BLAST)

1: MTKRTKKAGI VGKYGTRYGA SLRKQIKKME VSQHSKFFCE FCGKYAVKRK AVGIWGCKDC GKVKAGGAYT LNTASAVTVR STIRRLREQT EG

Best Arabidopsis Sequence Match ( AT3G60245.1 )
(BLAST)

1: MAKRTKKVGI VGKYGTRYGA SIRKQIKKME VSQHSKYFCE FCGKYGVKRK AVGIWGCKDC GKVKAGGAYT MNTASAVTVR STIRRLREQI EG

Arabidopsis Description

RPL37AC60S ribosomal protein L37a-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXU5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.