Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G143000.1 | Wheat | nucleus | 92.54 | 92.23 |
| TraesCS1A01G144000.3 | Wheat | nucleus | 92.81 | 92.13 |
| TraesCS1B01G161400.5 | Wheat | nucleus | 92.61 | 86.83 |
| Os10t0457700-01 | Rice | nucleus | 68.82 | 77.63 |
| Zm00001d032801_P005 | Maize | nucleus | 74.4 | 74.6 |
| KXG38419 | Sorghum | nucleus | 74.33 | 74.58 |
| GSMUA_Achr4P25080_001 | Banana | nucleus | 44.35 | 58.51 |
| VIT_14s0036g01460.t01 | Wine grape | nucleus | 54.77 | 55.18 |
| KRH34128 | Soybean | nucleus | 41.73 | 55.0 |
| Solyc04g050150.2.1 | Tomato | nucleus | 43.68 | 53.41 |
| KRG92726 | Soybean | nucleus | 52.96 | 53.06 |
| GSMUA_Achr4P25070_001 | Banana | golgi | 8.87 | 52.17 |
| AT1G08600.3 | Thale cress | nucleus | 50.07 | 50.37 |
| Solyc04g050160.2.1 | Tomato | nucleus | 10.08 | 47.62 |
| CDY22674 | Canola | nucleus | 23.99 | 46.36 |
| HORVU6Hr1G021370.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 4.91 | 30.42 |
| Bra018612.1-P | Field mustard | nucleus | 49.8 | 28.6 |
| HORVU7Hr1G119270.3 | Barley | nucleus | 5.24 | 27.86 |
| HORVU1Hr1G071540.2 | Barley | nucleus | 4.97 | 27.11 |
| HORVU6Hr1G061730.1 | Barley | cytosol, nucleus | 6.18 | 26.06 |
| HORVU6Hr1G021360.1 | Barley | cytosol, mitochondrion, nucleus | 3.83 | 25.33 |
| HORVU1Hr1G064000.1 | Barley | cytosol, nucleus | 5.31 | 24.69 |
| HORVU6Hr1G078680.2 | Barley | nucleus | 14.18 | 21.6 |
| HORVU2Hr1G037590.4 | Barley | plastid | 12.63 | 21.44 |
| HORVU2Hr1G024970.1 | Barley | nucleus | 4.64 | 21.1 |
| HORVU3Hr1G014660.2 | Barley | nucleus | 15.05 | 18.36 |
| HORVU5Hr1G085320.1 | Barley | plastid | 11.02 | 16.82 |
| HORVU2Hr1G127340.1 | Barley | cytosol | 12.3 | 16.53 |
| HORVU2Hr1G034330.2 | Barley | mitochondrion, nucleus, plastid | 10.55 | 16.1 |
| HORVU3Hr1G014620.1 | Barley | nucleus | 1.14 | 15.74 |
| HORVU4Hr1G074230.3 | Barley | nucleus, plastid | 10.69 | 15.5 |
| HORVU3Hr1G054100.2 | Barley | nucleus | 12.16 | 14.23 |
| HORVU2Hr1G014660.2 | Barley | nucleus | 10.89 | 12.82 |
| HORVU1Hr1G062970.3 | Barley | mitochondrion | 12.63 | 12.69 |
| HORVU1Hr1G094870.2 | Barley | mitochondrion | 14.25 | 10.25 |
| HORVU6Hr1G061720.1 | Barley | cytosol | 2.35 | 9.86 |
| HORVU3Hr1G014630.1 | Barley | cytosol, nucleus, plastid | 1.28 | 6.27 |
| KRH77275 | Soybean | cytosol | 0.13 | 2.17 |
| KRH28211 | Soybean | mitochondrion | 0.13 | 2.17 |
Protein Annotations
| MapMan:12.4.1.3.2 | Gene3D:3.40.50.10810 | UniProt:A0A287F6J1 | InterPro:ADD | ncoils:Coil | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | EnsemblPlantsGene:HORVU1Hr1G038370 | EnsemblPlants:HORVU1Hr1G038370.1 | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR025766 | InterPro:IPR038718 | InterPro:P-loop_NTPase |
| PFAM:PF00176 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51533 | PANTHER:PTHR10799 |
| PANTHER:PTHR10799:SF843 | SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 |
| UniParc:UPI000B477DC0 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrchr1H:+:265802527..265822585
Molecular Weight (calculated)
168579.0 Da
IEP (calculated)
5.547
GRAVY (calculated)
-0.657
Length
1488 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDVNGKLSDV DLKKMDAVHS NGQPVDDILI LESEGDENEL VVETNTIEGP FEEHKEHKSE KMDDSVHEEG STSTDDDSDS DLYGYLRESE NEQTSESDVE
0101: EKDIEVSIPE EKVKELVAEF HDVESKAAEA QESLEKESLE KIKAEVILEL SERLQGDALD LAVSMEMEQF KKEWSTVLDD LEIRSAVLLE ELDAAGIELP
0201: SLYKLIESQA PNVCETEAWK NRTHWAGSEV PEEANQSIRK ADEYLQSCRP VRRKHGRLLE EGASGFLAGK LPVLDDDSVQ CHEKSWSSFN ELTKSKKCTN
0301: TSFGSSNWAS VYLANTPQEA AALGLQFPGV DEVEEIAEVE GAVDDIKGVD EIELSEEQRR KYRKVREEDD AKAIKRLRRY MEKGTGGWCK GNSSNGCCEL
0401: PLLLDDVVLE ANSGRPLSEK QKMDKDEVSA ELLKRTREDD VELDHKRSKT VVIESDDDMQ MDSKLAQRIK GSEHGSAELE KGVDIIDLDL IPSQSPKFSE
0501: KDLPKAFKCT ICTKMLNASD VHRHPVLDVT VCGSCRFLVI EKNRLEGPVS GAYCTWCVQC EQLLSCSSCK MLFCAKCLLK NLGEECISEA KVTGWQCCCC
0601: QPSQLEHLIS ECDRALSGVE SSDLEGDNTS GNETNDPVSK HKRKKKIRRI MDDTELGEET KRKIAMEKAR QEHLKSMHEQ SASKLRSSNI GTSSGALSEV
0701: FLQDAGDGHV VNLAREEDEE PVRIPSSISA KLKPHQVAGI RFMWENVIQS VRTVKSGDKG FGCILAHNMG LGKTFQVITF LYVVMRCAQL GLRTALIVTP
0801: VNVLHNWRKE FTKWHPAELK PLRVYMMEDV PRLKRLDLLN KWQAKGGVLL IGYSSFRNLS LGRHVKEKDT ADEISNALQC GPDILVCDEA HMIKNKKADT
0901: THALKQVKTQ RRIALTGSPL QNNLMEYYCM VDFVREGFLG SSHEFRNRFQ NPIENGQHTN STSDDVKIMN QRSHILYEQL KGFVQRMNMN VVKNDLPPKK
1001: VFVITVKLSQ LQRKLYRRFL DVHGFSRGTS EEPNQHGGFF AKYQKLALIW NHPGLLQMAK EQRGSLRRED AVENFLTDES SSDDNHNIEN QFPVGGKQKS
1101: RTDPQSKKVD FMNEESNWWE NLLDDNTFKE ADYSGKMVLL LDILATCYEL GDKALVFSQN LTTLGLVEFY LSKMQIKGKQ GKYWKQGKDW YRLDGSTPPS
1201: ERQNLVERFN DPANTRVKCT LISTRAGSLG INLHAANRVV LLDGSWNPTH DLQAIYRVWR YGQIKPVYAY RLMAHGTMEE KIYKRQVTKE GLAARVVDRQ
1301: QVSRTISKEE MLHLFEFGDE ELLDESGNDT ITDRTRVGTE KLSMPNSTEL PVDTLMLNLL SDHPRWIAGY HEHEVLLQEN EEERLTKEEQ DMAWSSFKQS
1401: QQLDAVARRH DTERKPIDTN PAPPKVTSRS RRAQQSKSHS NNQKKCTNLN HMLTLRSHGT KAGCTTSCDE CGQGISWETL SRSDGRLR
0101: EKDIEVSIPE EKVKELVAEF HDVESKAAEA QESLEKESLE KIKAEVILEL SERLQGDALD LAVSMEMEQF KKEWSTVLDD LEIRSAVLLE ELDAAGIELP
0201: SLYKLIESQA PNVCETEAWK NRTHWAGSEV PEEANQSIRK ADEYLQSCRP VRRKHGRLLE EGASGFLAGK LPVLDDDSVQ CHEKSWSSFN ELTKSKKCTN
0301: TSFGSSNWAS VYLANTPQEA AALGLQFPGV DEVEEIAEVE GAVDDIKGVD EIELSEEQRR KYRKVREEDD AKAIKRLRRY MEKGTGGWCK GNSSNGCCEL
0401: PLLLDDVVLE ANSGRPLSEK QKMDKDEVSA ELLKRTREDD VELDHKRSKT VVIESDDDMQ MDSKLAQRIK GSEHGSAELE KGVDIIDLDL IPSQSPKFSE
0501: KDLPKAFKCT ICTKMLNASD VHRHPVLDVT VCGSCRFLVI EKNRLEGPVS GAYCTWCVQC EQLLSCSSCK MLFCAKCLLK NLGEECISEA KVTGWQCCCC
0601: QPSQLEHLIS ECDRALSGVE SSDLEGDNTS GNETNDPVSK HKRKKKIRRI MDDTELGEET KRKIAMEKAR QEHLKSMHEQ SASKLRSSNI GTSSGALSEV
0701: FLQDAGDGHV VNLAREEDEE PVRIPSSISA KLKPHQVAGI RFMWENVIQS VRTVKSGDKG FGCILAHNMG LGKTFQVITF LYVVMRCAQL GLRTALIVTP
0801: VNVLHNWRKE FTKWHPAELK PLRVYMMEDV PRLKRLDLLN KWQAKGGVLL IGYSSFRNLS LGRHVKEKDT ADEISNALQC GPDILVCDEA HMIKNKKADT
0901: THALKQVKTQ RRIALTGSPL QNNLMEYYCM VDFVREGFLG SSHEFRNRFQ NPIENGQHTN STSDDVKIMN QRSHILYEQL KGFVQRMNMN VVKNDLPPKK
1001: VFVITVKLSQ LQRKLYRRFL DVHGFSRGTS EEPNQHGGFF AKYQKLALIW NHPGLLQMAK EQRGSLRRED AVENFLTDES SSDDNHNIEN QFPVGGKQKS
1101: RTDPQSKKVD FMNEESNWWE NLLDDNTFKE ADYSGKMVLL LDILATCYEL GDKALVFSQN LTTLGLVEFY LSKMQIKGKQ GKYWKQGKDW YRLDGSTPPS
1201: ERQNLVERFN DPANTRVKCT LISTRAGSLG INLHAANRVV LLDGSWNPTH DLQAIYRVWR YGQIKPVYAY RLMAHGTMEE KIYKRQVTKE GLAARVVDRQ
1301: QVSRTISKEE MLHLFEFGDE ELLDESGNDT ITDRTRVGTE KLSMPNSTEL PVDTLMLNLL SDHPRWIAGY HEHEVLLQEN EEERLTKEEQ DMAWSSFKQS
1401: QQLDAVARRH DTERKPIDTN PAPPKVTSRS RRAQQSKSHS NNQKKCTNLN HMLTLRSHGT KAGCTTSCDE CGQGISWETL SRSDGRLR
0001: MEANEESLKG KIEKLEGKEV IVESKEDEMD IIIEENREAE QEVMEVKARD GRGEQNDVLM EENNNQGEQK DEEMQDASSR SESSDFNSDE DEQILSRRDD
0101: ELDLEKPLSE EEIDELISDL LAVESKAAEA QEALEKESLS KVESEVREEL AQALRGDELD EAVAAEMMTF KDEWEATLDE LETESATLLE QLDGAGIELP
0201: KLYEMIESQA PNGCYTEAWK QRAHWVGTQV TKETVESLAN AERFLHTHRP VRKRHGKLLE EGASGFLEKK LADGAVKESL AGTSELDWSS LNKVFSEKRD
0301: ESVSFGSKQW ASVYLASTPH QAAAMGLEFP GVNEVEEIEE IDASLADPFL ADAIDNEREL ALTEEQKTNY IRVKEEDDIT CDRVLQLRLK RKRRKKRSKQ
0401: VIRCAAENMD DDSVYLDGNN TTPNFAKDQV KSPETSTQVH NSEVNIEENG NFSNSDVDKM TPSTHINVDA KRDDSQNPAN NFRCTACNKV AVEVHSHPLL
0501: EVIVCMDCKR SIEDRVSKVD DSLERHCEWC GHIADLIDCR TCEKLFCASC IKRNIGEEYM SEAQSSGWDC CCCSPIPLQR LTLELEKAMR DKKSIELSSD
0601: SSSDSSSDNN SVDTDADVNV TISSKKKSKK KIRRIIDDAE LGKDTRTKIA IEKARQERLR SLQFSARYKT ISSMGDVKSI PEGAEVEVLG DAHSGYIVNV
0701: VREIGEEAVR VPRSISAKLK VHQVTGIRFM WENIIQSISR VKSGDKGLGC ILAHTMGLGK TFQVIAFLYT AMRCVDLGLK TALIVTPVNV LHNWRSEFEK
0801: WMPSEVKPLR IFMLGDVSRE RRFDLLTKWR KKGGVFLMGY TNFRNLSLGR GVKDLNAARG ICNALRDGPD ILVCDEAHII KNTKADTTQA LKQVKCQRRI
0901: ALTGSPLQNN LMEYYCMVDF VREGFLGSSP EFRNRFQNPI ENGQHMNSTA EDVKIMNQRS HILYEQLKGF VQRMDMNVVK KDLPPKTVFV ISVKLSPLQR
1001: ILYQRFLELY GFSDGRTDER MRKNFFAAYQ VLAQILNHPG IPQLRSEDSK NGRRGSIVDI PDDCSSDENI DYNMVTGEKQ RTMNDLQDKV DGYLQKDWWV
1101: DLLQKNNYKV SDFSGKMILL LDILSMSADV GDKALVFSQS IPTLDLIELY LSRVPRHGKQ GKFWKKGKDW YRIDGKTESS ERQKLVDRFN EPDNKRVKCT
1201: LISTRAGSLG INLYAANRVI IVDGSWNPTY DLQAIFRAWR YGQKKPVFAY RLMARGTIEE KIYKRQVTKE GLAARVVDRQ QVHRTISKEE MLHLFEFDDD
1301: DEKSEAVTEI SKQNEAGHSN LVEQAILWTK KATLSRVGGD KLMENLLQRH GPNWISSFHE HETLLQENEE ERLTKEEKDM AWEVYRRALE WEEVQRVPFS
1401: ESPVVPKPSP STQTEPLPQP KGFNRSRFVN RNCTRIAHQL TLISQGLKVG SSTVCGECGR VIRWEDVIPA SKLSAVIVN
0101: ELDLEKPLSE EEIDELISDL LAVESKAAEA QEALEKESLS KVESEVREEL AQALRGDELD EAVAAEMMTF KDEWEATLDE LETESATLLE QLDGAGIELP
0201: KLYEMIESQA PNGCYTEAWK QRAHWVGTQV TKETVESLAN AERFLHTHRP VRKRHGKLLE EGASGFLEKK LADGAVKESL AGTSELDWSS LNKVFSEKRD
0301: ESVSFGSKQW ASVYLASTPH QAAAMGLEFP GVNEVEEIEE IDASLADPFL ADAIDNEREL ALTEEQKTNY IRVKEEDDIT CDRVLQLRLK RKRRKKRSKQ
0401: VIRCAAENMD DDSVYLDGNN TTPNFAKDQV KSPETSTQVH NSEVNIEENG NFSNSDVDKM TPSTHINVDA KRDDSQNPAN NFRCTACNKV AVEVHSHPLL
0501: EVIVCMDCKR SIEDRVSKVD DSLERHCEWC GHIADLIDCR TCEKLFCASC IKRNIGEEYM SEAQSSGWDC CCCSPIPLQR LTLELEKAMR DKKSIELSSD
0601: SSSDSSSDNN SVDTDADVNV TISSKKKSKK KIRRIIDDAE LGKDTRTKIA IEKARQERLR SLQFSARYKT ISSMGDVKSI PEGAEVEVLG DAHSGYIVNV
0701: VREIGEEAVR VPRSISAKLK VHQVTGIRFM WENIIQSISR VKSGDKGLGC ILAHTMGLGK TFQVIAFLYT AMRCVDLGLK TALIVTPVNV LHNWRSEFEK
0801: WMPSEVKPLR IFMLGDVSRE RRFDLLTKWR KKGGVFLMGY TNFRNLSLGR GVKDLNAARG ICNALRDGPD ILVCDEAHII KNTKADTTQA LKQVKCQRRI
0901: ALTGSPLQNN LMEYYCMVDF VREGFLGSSP EFRNRFQNPI ENGQHMNSTA EDVKIMNQRS HILYEQLKGF VQRMDMNVVK KDLPPKTVFV ISVKLSPLQR
1001: ILYQRFLELY GFSDGRTDER MRKNFFAAYQ VLAQILNHPG IPQLRSEDSK NGRRGSIVDI PDDCSSDENI DYNMVTGEKQ RTMNDLQDKV DGYLQKDWWV
1101: DLLQKNNYKV SDFSGKMILL LDILSMSADV GDKALVFSQS IPTLDLIELY LSRVPRHGKQ GKFWKKGKDW YRIDGKTESS ERQKLVDRFN EPDNKRVKCT
1201: LISTRAGSLG INLYAANRVI IVDGSWNPTY DLQAIFRAWR YGQKKPVFAY RLMARGTIEE KIYKRQVTKE GLAARVVDRQ QVHRTISKEE MLHLFEFDDD
1301: DEKSEAVTEI SKQNEAGHSN LVEQAILWTK KATLSRVGGD KLMENLLQRH GPNWISSFHE HETLLQENEE ERLTKEEKDM AWEVYRRALE WEEVQRVPFS
1401: ESPVVPKPSP STQTEPLPQP KGFNRSRFVN RNCTRIAHQL TLISQGLKVG SSTVCGECGR VIRWEDVIPA SKLSAVIVN
Arabidopsis Description
ATRXCHR20 [Source:UniProtKB/TrEMBL;Acc:A0A178VZQ9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.