Factsheet for HORVU6Hr1G021370.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, plastid, cytosol, plasma membrane, golgi, nucleus

Predictor Summary:

mitochondrion 2
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus, plastid, secretory
Any Predictor:	cytosol, mitochondrion, plastid, secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G064000.1	Barley	cytosol, nucleus	51.25	38.44
TraesCS3A01G015600.1	Wheat	endoplasmic reticulum, golgi	62.5	24.83
TraesCS7D01G144700.1	Wheat	cytosol	49.58	17.81
Os01t0636700-01	Rice	cytoskeleton, cytosol, nucleus	34.58	17.7
HORVU1Hr1G071540.2	Barley	nucleus	18.75	16.48
HORVU7Hr1G119270.3	Barley	nucleus	19.17	16.43
KRH59600	Soybean	cytosol, nucleus, plastid	52.5	16.07
KXG27526	Sorghum	cytosol	65.83	15.05
HORVU2Hr1G127340.1	Barley	cytosol	67.92	14.72
Zm00001d002950_P002	Maize	nucleus	65.83	14.58
VIT_04s0044g01680.t01	Wine grape	cytosol	55.42	12.75
KRH40956	Soybean	nucleus	53.33	12.43
AT5G63950.1	Thale cress	cytosol	55.0	12.11
CDX84469	Canola	cytosol, mitochondrion, nucleus, plastid	53.33	11.17
Bra024250.1-P	Field mustard	cytosol	52.92	11.01
Solyc01g068280.2.1	Tomato	nucleus	53.75	10.62
CDY43772	Canola	mitochondrion	51.25	10.6
GSMUA_Achr7P23270_001	Banana	nucleus	60.83	10.25
HORVU6Hr1G061730.1	Barley	cytosol, nucleus	10.83	7.37
HORVU2Hr1G037590.4	Barley	plastid	25.0	6.84
HORVU3Hr1G014660.2	Barley	nucleus	34.58	6.8
HORVU6Hr1G078680.2	Barley	nucleus	27.08	6.65
HORVU1Hr1G038370.1	Barley	nucleus	30.42	4.91
HORVU5Hr1G085320.1	Barley	plastid	17.92	4.41
HORVU2Hr1G034330.2	Barley	mitochondrion, nucleus, plastid	17.92	4.41
HORVU4Hr1G074230.3	Barley	nucleus, plastid	18.33	4.29
HORVU2Hr1G024970.1	Barley	nucleus	5.42	3.98
HORVU3Hr1G054100.2	Barley	nucleus	19.58	3.69
HORVU1Hr1G062970.3	Barley	mitochondrion	20.83	3.37
HORVU2Hr1G014660.2	Barley	nucleus	17.5	3.32
HORVU1Hr1G094870.2	Barley	mitochondrion	27.08	3.14
HORVU6Hr1G061720.1	Barley	cytosol	4.17	2.82
HORVU6Hr1G021360.1	Barley	cytosol, mitochondrion, nucleus	0.83	0.89
HORVU3Hr1G014620.1	Barley	nucleus	0.0	0.0
HORVU3Hr1G014630.1	Barley	cytosol, nucleus, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:HORVU6Hr1G021370.1	EnsemblPlantsGene:HORVU6Hr1G021370	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:IPR014001	InterPro:IPR038718	InterPro:P-loop_NTPase
InterPro:SNF2-like_sf	InterPro:SNF2_N	PANTHER:PTHR10799	PANTHER:PTHR10799:SF756	PFAM:PF00176	PFscan:PS51192
SMART:SM00487	SUPFAM:SSF52540	UniParc:UPI000B46F8AC	UniProt:A0A287TK07	MapMan:35.1	:

Description

No Description!

Coordinates

chrchr6H:-:64291764..64294568

Molecular Weight (calculated)

27870.7 Da

IEP (calculated)

8.829

GRAVY (calculated)

-0.370

Length

240 amino acids

Sequence
(BLAST)

001: MGLGKTMQVS AFLAGLFHSG LIRRALVVGP RTLLTHWIKE LSIVGLSHMI CNYYGSNKNI RDNELQHAFK EGGILLTTYD IVRINYNLIR GDFYNDADHE
101: EEEDFWNYVV LDEAHYIKNP NTQRAQSLFE IPCVRRIAIS GTPMQNNLMV QNKKLRERIK PYFLRRMKSE VSLEIGLTDD KKLPKKNELI IWLKLTDCQR
201: RLYKAFLNHE LVPFEPVENS LAALTHICSS YTHSDSKKNE

Best Arabidopsis Sequence Match ( AT5G63950.1 )
(BLAST)

0001: MAENTASHRR KPRSLNDRHY SILQDLSAPP RQPPSSSHGE DEETKKSMIK LAGRRRLCKA LPKEDEADGY DDPDLVDFYS PVKGETSLDS AGIGNKFTSW
0101: DESKEANTEL AGEPNFSIIT DFCSPSPQLK QKEEMQGDGG RNEIMGILDD LTSKLGTMSI QKKKDSQSND FDACGVKSQV DKFDFEDAKS SFSLLSDLSK
0201: SSPDVVTTYN AGVNSIKDKQ GKSGFAIREE QTSKEFSREW EERISNVGKQ NSYSGRHFDD NSEDNRQGYN LDRGKSQCKE VDQSMKTTRH IEVSEKIRTV
0301: GRSNAAKLRD LDEDDDDDDC LILSGKKAAE MKINKPARSY NAKRHGYDER SLEDEGSITL TGLNLSYTLP GKIATMLYPH QREGLNWLWS LHTQGKGGIL
0401: GDDMGLGKTM QICSFLAGLF HSKLIKRALV VAPKTLLPHW MKELATVGLS QMTREYYGTS TKAREYDLHH ILQGKGILLT TYDIVRNNTK ALQGDDHYTD
0501: EDDEDGNKWD YMILDEGHLI KNPNTQRAKS LLEIPSSHRI IISGTPIQNN LKELWALFNF SCPGLLGDKN WFKQNYEHYI LRGTDKNATD REQRIGSTVA
0601: KNLREHIQPF FLRRLKSEVF GDDGATSKLS KKDEIVVWLR LTACQRQLYE AFLNSEIVLS AFDGSPLAAL TILKKICDHP LLLTKRAAED VLEGMDSTLT
0701: QEEAGVAERL AMHIADNVDT DDFQTKNDSI SCKLSFIMSL LENLIPEGHR VLIFSQTRKM LNLIQDSLTS NGYSFLRIDG TTKAPDRLKT VEEFQEGHVA
0801: PIFLLTSQVG GLGLTLTKAD RVIVVDPAWN PSTDNQSVDR AYRIGQTKDV IVYRLMTSAT VEEKIYRKQV YKGGLFKTAT EHKEQIRYFS QQDLRELFSL
0901: PKGGFDVSPT QQQLYEEHYN QIKLDEKLES HVKFLETLGI AGVSHHSLLF SKTAPIQAIQ KDEEEQIRRE TALLLGRASA SISQDTVING ADYAFKPKDV
1001: NLDKRINISP VDDKELSESV IKARLNRLTM LLQNKGTVSR LPDGGAKIQK QIAELTRELK DMKAAERINM PQVIDLEEDI SRKMQKGLNL

Arabidopsis Description

CHR24Protein CHROMATIN REMODELING 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8W103]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.