Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43772 | Canola | mitochondrion | 93.41 | 92.84 |
| AT5G63950.1 | Thale cress | cytosol | 75.37 | 79.72 |
| KRH59600 | Soybean | cytosol, nucleus, plastid | 42.84 | 63.01 |
| TraesCS3A01G015600.1 | Wheat | endoplasmic reticulum, golgi | 29.66 | 56.62 |
| TraesCS1D01G263000.1 | Wheat | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 32.87 | 56.48 |
| VIT_04s0044g01680.t01 | Wine grape | cytosol | 51.0 | 56.38 |
| HORVU6Hr1G021360.1 | Barley | cytosol, mitochondrion, nucleus | 10.84 | 55.56 |
| TraesCS6B01G146000.1 | Wheat | endoplasmic reticulum, golgi | 16.13 | 55.52 |
| KRH40956 | Soybean | nucleus | 49.26 | 55.15 |
| HORVU6Hr1G021370.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 11.01 | 52.92 |
| TraesCS6D01G107800.1 | Wheat | endoplasmic reticulum | 14.92 | 52.6 |
| HORVU1Hr1G064000.1 | Barley | cytosol, nucleus | 13.79 | 49.69 |
| TraesCS2D01G568400.1 | Wheat | cytosol | 40.59 | 49.01 |
| TraesCS7D01G144700.1 | Wheat | cytosol | 27.67 | 47.75 |
| Solyc01g068280.2.1 | Tomato | nucleus | 49.09 | 46.58 |
| KXG27526 | Sorghum | cytosol | 40.59 | 44.57 |
| TraesCS2A01G561600.1 | Wheat | mitochondrion | 40.68 | 43.87 |
| Zm00001d002950_P002 | Maize | nucleus | 39.9 | 42.44 |
| HORVU2Hr1G127340.1 | Barley | cytosol | 39.29 | 40.92 |
| GSMUA_Achr7P23270_001 | Banana | nucleus | 42.58 | 34.48 |
| Os01t0636700-01 | Rice | cytoskeleton, cytosol, nucleus | 10.58 | 26.01 |
| Bra024192.1-P | Field mustard | nucleus | 21.77 | 21.62 |
| Bra022395.1-P | Field mustard | nucleus | 15.09 | 19.06 |
| Bra021841.1-P | Field mustard | cytosol | 10.93 | 16.49 |
| Bra015035.1-P | Field mustard | nucleus | 11.62 | 12.86 |
| Bra001944.1-P | Field mustard | nucleus | 11.88 | 12.85 |
| Bra000888.1-P | Field mustard | cytosol | 4.68 | 11.76 |
| Bra032544.1-P | Field mustard | nucleus | 15.78 | 11.08 |
| Bra002302.1-P | Field mustard | cytosol | 11.62 | 10.75 |
| Bra007061.1-P | Field mustard | mitochondrion | 18.82 | 10.6 |
| Bra021058.1-P | Field mustard | nucleus | 11.54 | 10.46 |
| Bra015430.1-P | Field mustard | nucleus | 11.45 | 8.34 |
| Bra018612.1-P | Field mustard | nucleus | 16.22 | 7.22 |
| Bra031634.1-P | Field mustard | nucleus | 2.69 | 5.34 |
Protein Annotations
| MapMan:12.4.1.4.3 | Gene3D:3.40.50.10810 | EnsemblPlantsGene:Bra024250 | EnsemblPlants:Bra024250.1 | EnsemblPlants:Bra024250.1-P | ncoils:Coil |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0006139 | GO:GO:0006259 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0045951 | GO:GO:0046686 | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR038718 | UniProt:M4E646 | InterPro:P-loop_NTPase |
| PFAM:PF00176 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF756 |
| SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 | UniParc:UPI000253F333 |
| SEG:seg | : | : | : | : | : |
Description
AT5G63950 (E=9e-205) CHR24 | CHR24 (chromatin remodeling 24); ATP binding / DNA binding / helicase/ nucleic acid binding
Coordinates
chrA06:-:14535760..14547579
Molecular Weight (calculated)
129056.0 Da
IEP (calculated)
5.725
GRAVY (calculated)
-0.594
Length
1153 amino acids
Sequence
(BLAST)
(BLAST)
0001: MADNTTSTRR KPQSLNDRHY RLLQDLSAPP KHAPSSSSTH EETKIKLAGR RRLCKASVKE DVSEEDDDPD LADFDSPGKG DTPLERAETG NKFTPWDEES
0101: KEAKTEVGDL PSFSMITDFG SPSPHLEPKE ERHGGGGQNE IMDILDDLTS KLGTMSIKKK KDIQSSDSES VKPSFSLISD LSESSSKAGA DCLSDRQGNV
0201: GFSIPEEKAS NVFAGERGER VSHVGKQQPF PGQQHYVAKS EGYRPDYNLD RGKGKLEEVD RSLKTTRHVE VSEKLRSVGR SNAARLRDLD DDDDDDCVVL
0301: TGKKAAEMKI HLEKPTKPAR SHNTATHAYE EKVSEDEGSI TFTGPKSSYT LRGKIATILY PHQREGLKWL WSLHIQEKGG ILGDDMGLGK TMQICSFLAG
0401: LFHSKLIKRA MIVAPKTLLP HWMKELATVG LSQMTREYYG NSVKAREYDL NHILQGKGVL LTTYDIVRNN TKALQGYQLY TDDDDEDDIK WDYMILDEGH
0501: LIKNPSTQRA KSLLEIPSSH RIIISGTPIQ NNLKELWALF NFSCPGLLGD KKWFKDNYEH YILRGNDKDA SDRDKRIGST VAKKLREHIQ PFFLRRLKSE
0601: VFGDDATTSR LSKKDEIVVW LRLTACQRQI YEAFLNSEIV LSAFDGSPLA ALTENMGDET LIGDGDGENL TDGEARLVSR SIPDLERTKE TSGGEEMGLV
0701: EVSKICEEEG SPKHTGGVED GLMGNQLVGI APILKKICDH PLLLTKRAAE DVLEGMESTL TQEEAGVAER LAMHIADNVD TDDFQTKNDS ISCKLTFIMS
0801: LLENLIPEGH RVLIFSQTRK MLNLIQDSLT SNGYSFLRID GTTKGLDRLK TVEEFQSGHV APIFLLTSQV GGLGLTLTKA DRVIVVDPAW NPSTDNQSVD
0901: RAYRIGQTKD VIVYRLMTSA TVEEKIYRKQ VYKGGLFKTA TEQKEQIRYF SQQDLRELFS LPKGGFDVSP TQQQLYEEHY NQIKLDETLE SHVKFLETLG
1001: IAGVSHHSLL FSKTAPIQPI QQDEVEEIRR ITTSFVGGPS AKSSQENMIN GAVYAFKPKD VNLDKRINIS PIDESEWSES EIKARISRLS MLFQNKSMVA
1101: SLPDRGAKIQ KQIAELTREL EEIKAVKSND MPHQVIDLED ISQKMHKGLN LLE
0101: KEAKTEVGDL PSFSMITDFG SPSPHLEPKE ERHGGGGQNE IMDILDDLTS KLGTMSIKKK KDIQSSDSES VKPSFSLISD LSESSSKAGA DCLSDRQGNV
0201: GFSIPEEKAS NVFAGERGER VSHVGKQQPF PGQQHYVAKS EGYRPDYNLD RGKGKLEEVD RSLKTTRHVE VSEKLRSVGR SNAARLRDLD DDDDDDCVVL
0301: TGKKAAEMKI HLEKPTKPAR SHNTATHAYE EKVSEDEGSI TFTGPKSSYT LRGKIATILY PHQREGLKWL WSLHIQEKGG ILGDDMGLGK TMQICSFLAG
0401: LFHSKLIKRA MIVAPKTLLP HWMKELATVG LSQMTREYYG NSVKAREYDL NHILQGKGVL LTTYDIVRNN TKALQGYQLY TDDDDEDDIK WDYMILDEGH
0501: LIKNPSTQRA KSLLEIPSSH RIIISGTPIQ NNLKELWALF NFSCPGLLGD KKWFKDNYEH YILRGNDKDA SDRDKRIGST VAKKLREHIQ PFFLRRLKSE
0601: VFGDDATTSR LSKKDEIVVW LRLTACQRQI YEAFLNSEIV LSAFDGSPLA ALTENMGDET LIGDGDGENL TDGEARLVSR SIPDLERTKE TSGGEEMGLV
0701: EVSKICEEEG SPKHTGGVED GLMGNQLVGI APILKKICDH PLLLTKRAAE DVLEGMESTL TQEEAGVAER LAMHIADNVD TDDFQTKNDS ISCKLTFIMS
0801: LLENLIPEGH RVLIFSQTRK MLNLIQDSLT SNGYSFLRID GTTKGLDRLK TVEEFQSGHV APIFLLTSQV GGLGLTLTKA DRVIVVDPAW NPSTDNQSVD
0901: RAYRIGQTKD VIVYRLMTSA TVEEKIYRKQ VYKGGLFKTA TEQKEQIRYF SQQDLRELFS LPKGGFDVSP TQQQLYEEHY NQIKLDETLE SHVKFLETLG
1001: IAGVSHHSLL FSKTAPIQPI QQDEVEEIRR ITTSFVGGPS AKSSQENMIN GAVYAFKPKD VNLDKRINIS PIDESEWSES EIKARISRLS MLFQNKSMVA
1101: SLPDRGAKIQ KQIAELTREL EEIKAVKSND MPHQVIDLED ISQKMHKGLN LLE
0001: MAENTASHRR KPRSLNDRHY SILQDLSAPP RQPPSSSHGE DEETKKSMIK LAGRRRLCKA LPKEDEADGY DDPDLVDFYS PVKGETSLDS AGIGNKFTSW
0101: DESKEANTEL AGEPNFSIIT DFCSPSPQLK QKEEMQGDGG RNEIMGILDD LTSKLGTMSI QKKKDSQSND FDACGVKSQV DKFDFEDAKS SFSLLSDLSK
0201: SSPDVVTTYN AGVNSIKDKQ GKSGFAIREE QTSKEFSREW EERISNVGKQ NSYSGRHFDD NSEDNRQGYN LDRGKSQCKE VDQSMKTTRH IEVSEKIRTV
0301: GRSNAAKLRD LDEDDDDDDC LILSGKKAAE MKINKPARSY NAKRHGYDER SLEDEGSITL TGLNLSYTLP GKIATMLYPH QREGLNWLWS LHTQGKGGIL
0401: GDDMGLGKTM QICSFLAGLF HSKLIKRALV VAPKTLLPHW MKELATVGLS QMTREYYGTS TKAREYDLHH ILQGKGILLT TYDIVRNNTK ALQGDDHYTD
0501: EDDEDGNKWD YMILDEGHLI KNPNTQRAKS LLEIPSSHRI IISGTPIQNN LKELWALFNF SCPGLLGDKN WFKQNYEHYI LRGTDKNATD REQRIGSTVA
0601: KNLREHIQPF FLRRLKSEVF GDDGATSKLS KKDEIVVWLR LTACQRQLYE AFLNSEIVLS AFDGSPLAAL TILKKICDHP LLLTKRAAED VLEGMDSTLT
0701: QEEAGVAERL AMHIADNVDT DDFQTKNDSI SCKLSFIMSL LENLIPEGHR VLIFSQTRKM LNLIQDSLTS NGYSFLRIDG TTKAPDRLKT VEEFQEGHVA
0801: PIFLLTSQVG GLGLTLTKAD RVIVVDPAWN PSTDNQSVDR AYRIGQTKDV IVYRLMTSAT VEEKIYRKQV YKGGLFKTAT EHKEQIRYFS QQDLRELFSL
0901: PKGGFDVSPT QQQLYEEHYN QIKLDEKLES HVKFLETLGI AGVSHHSLLF SKTAPIQAIQ KDEEEQIRRE TALLLGRASA SISQDTVING ADYAFKPKDV
1001: NLDKRINISP VDDKELSESV IKARLNRLTM LLQNKGTVSR LPDGGAKIQK QIAELTRELK DMKAAERINM PQVIDLEEDI SRKMQKGLNL
0101: DESKEANTEL AGEPNFSIIT DFCSPSPQLK QKEEMQGDGG RNEIMGILDD LTSKLGTMSI QKKKDSQSND FDACGVKSQV DKFDFEDAKS SFSLLSDLSK
0201: SSPDVVTTYN AGVNSIKDKQ GKSGFAIREE QTSKEFSREW EERISNVGKQ NSYSGRHFDD NSEDNRQGYN LDRGKSQCKE VDQSMKTTRH IEVSEKIRTV
0301: GRSNAAKLRD LDEDDDDDDC LILSGKKAAE MKINKPARSY NAKRHGYDER SLEDEGSITL TGLNLSYTLP GKIATMLYPH QREGLNWLWS LHTQGKGGIL
0401: GDDMGLGKTM QICSFLAGLF HSKLIKRALV VAPKTLLPHW MKELATVGLS QMTREYYGTS TKAREYDLHH ILQGKGILLT TYDIVRNNTK ALQGDDHYTD
0501: EDDEDGNKWD YMILDEGHLI KNPNTQRAKS LLEIPSSHRI IISGTPIQNN LKELWALFNF SCPGLLGDKN WFKQNYEHYI LRGTDKNATD REQRIGSTVA
0601: KNLREHIQPF FLRRLKSEVF GDDGATSKLS KKDEIVVWLR LTACQRQLYE AFLNSEIVLS AFDGSPLAAL TILKKICDHP LLLTKRAAED VLEGMDSTLT
0701: QEEAGVAERL AMHIADNVDT DDFQTKNDSI SCKLSFIMSL LENLIPEGHR VLIFSQTRKM LNLIQDSLTS NGYSFLRIDG TTKAPDRLKT VEEFQEGHVA
0801: PIFLLTSQVG GLGLTLTKAD RVIVVDPAWN PSTDNQSVDR AYRIGQTKDV IVYRLMTSAT VEEKIYRKQV YKGGLFKTAT EHKEQIRYFS QQDLRELFSL
0901: PKGGFDVSPT QQQLYEEHYN QIKLDEKLES HVKFLETLGI AGVSHHSLLF SKTAPIQAIQ KDEEEQIRRE TALLLGRASA SISQDTVING ADYAFKPKDV
1001: NLDKRINISP VDDKELSESV IKARLNRLTM LLQNKGTVSR LPDGGAKIQK QIAELTRELK DMKAAERINM PQVIDLEEDI SRKMQKGLNL
Arabidopsis Description
CHR24Protein CHROMATIN REMODELING 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8W103]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.