Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G42670.4 | Thale cress | nucleus | 81.04 | 81.88 |
| Bra002302.1-P | Field mustard | cytosol | 70.1 | 71.51 |
| KRG88505 | Soybean | endoplasmic reticulum, nucleus | 48.62 | 51.29 |
| KRH73247 | Soybean | nucleus | 52.09 | 50.53 |
| VIT_13s0067g01950.t01 | Wine grape | nucleus | 49.65 | 49.72 |
| KRG97679 | Soybean | nucleus | 47.68 | 49.07 |
| PGSC0003DMT400061540 | Potato | nucleus | 46.73 | 46.19 |
| Solyc06g050510.2.1 | Tomato | nucleus | 46.73 | 46.15 |
| GSMUA_Achr8P01860_001 | Banana | nucleus | 32.57 | 38.33 |
| KXG37026 | Sorghum | nucleus | 33.44 | 34.55 |
| TraesCS2B01G105400.1 | Wheat | nucleus | 32.49 | 32.93 |
| HORVU2Hr1G014660.2 | Barley | nucleus | 32.73 | 32.91 |
| TraesCS2D01G087600.1 | Wheat | nucleus | 32.1 | 32.48 |
| TraesCS2A01G089500.1 | Wheat | plastid | 31.79 | 32.04 |
| Zm00001d022576_P001 | Maize | golgi, nucleus, plasma membrane | 32.73 | 31.18 |
| Bra021841.1-P | Field mustard | cytosol | 15.11 | 25.13 |
| Bra015035.1-P | Field mustard | nucleus | 19.35 | 23.61 |
| Bra001944.1-P | Field mustard | nucleus | 19.04 | 22.7 |
| Bra000888.1-P | Field mustard | cytosol | 7.0 | 19.39 |
| Bra015430.1-P | Field mustard | nucleus | 20.38 | 16.36 |
| Bra022395.1-P | Field mustard | nucleus | 10.07 | 14.02 |
| Os04t0692750-01 | Rice | cytosol | 10.62 | 13.68 |
| Bra024192.1-P | Field mustard | nucleus | 11.25 | 12.32 |
| Bra024250.1-P | Field mustard | cytosol | 10.46 | 11.54 |
| Bra032544.1-P | Field mustard | nucleus | 10.07 | 7.79 |
| Bra007061.1-P | Field mustard | mitochondrion | 10.94 | 6.79 |
| Bra018612.1-P | Field mustard | nucleus | 12.82 | 6.29 |
| Bra031634.1-P | Field mustard | nucleus | 1.81 | 3.96 |
| Os04t0692700-01 | Rice | nucleus | 0.0 | 0.0 |
Protein Annotations
| MapMan:12.5.1.10 | MapMan:16.10.1.2 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | EnsemblPlantsGene:Bra021058 | EnsemblPlants:Bra021058.1 |
| EnsemblPlants:Bra021058.1-P | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR038718 | UniProt:M4DX12 |
| InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 |
| PANTHER:PTHR10799:SF792 | SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 |
| UniParc:UPI0002547091 | SEG:seg | : | : | : | : |
Description
AT3G42670 (E=0.0) CHR38, CLSY | CHR38 (CHROMATIN REMODELING 38); ATP binding / DNA binding / helicase/ nucleic acid binding
Coordinates
chrA08:+:10146672..10150819
Molecular Weight (calculated)
146066.0 Da
IEP (calculated)
6.373
GRAVY (calculated)
-0.500
Length
1271 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKRKRYYQLN HTFDPCPFEV FCSGTWKAVE YLRVESGSMT MRLFENGHVL DDVKPFQKLR LRSRKATTID CTTFLRHGVD VCVLYQKDEV TPEDDLEPVW
0101: VDAKIVSIER KPHEPECLCE FHVSIYIDQG CISSEKHRMN RASVVMGLDQ ISILQKFPKE QSVDRFYRWR YSEDSASLVK TRLTLGKFMP DLSWLLVTSV
0201: LKNTVFHIKT IQNKMVYLIM TDEESSSSSC LSAMNITVED GVYLSKVVTF NPDEDDTTLA LDYVHVEEEE SEEEEEVMEL RRSKRRNMRP DRYGFSGVQP
0301: DSKDGWVRLM PYKYSTWTDD EEGDDEDSND DRDSDDDLYL PLSHFFGKES NTKGFSKRKE SEIVLVDKTA RKKKMMMKMK MKKRDGSGGS RELSVIPFTP
0401: VFDPIPLEQF GFNANSLCSG GFSGSNLIDE MDRYRSKPSK YGKKKMLSEM DEMESDLGWI DNMSKSSVQK GTGSHSRIRS GYGKTGHSDE PQIFKRRTLS
0501: AGAYNELIES YMSNIDSTIA AKKETNSVVE QWEALKNPTS TTVEDEDGSS EDDDSEGETS ENEMLWREME LCMASSYILD DNELRVDNEA FQKATSGCEH
0601: DYELNEEIGM CCKLCGHVGS EIRDVSAPFA RQKKWTTEAK HINEEDIDTN VKQDGDERRS FTMPVATLEV PSPEESENVW SLIPQLRRKL HMHQKKAFEF
0701: LWRNLAGSVV PSMMDPSSDK IGGCVVSHTP GAGKTFLIIA FLASYLKIFP GKRPLVLAPK TTLYTWYKEF IKWEIPVPVH LIHGRRTYCV AKENKIQFKG
0801: IPKPSQDVSH VIDCLDKIQK WHAQPSVLVM GYTSFLTLMR EDSKFAHRKY MAKVLRESPG LLVLDEGHNP RSTKSRLRKA LMKVDTDLRV LLSGTLFQNN
0901: FCEYFNTLCL ARPKFIHEVL MELDEKFNTN QTVQKAPHLI ENRARKFFLD IIAKKIDTKV GDERLQGLNM LRNMTSGFID NYEGSGSGSG DVLPGLQIYT
1001: LLMNSTDLQH KTLTKLQTVM STYHGYPLEL ELLITLAAIH PWLVKTSTCC AKFFNPEELF EIEKLKHDAK KGSKVMFVLN LVFRVVKREK ILIFCHNIAP
1101: IRLFLELFEN VFRWKRGREI LTLTGDLELF DRGRVIDKFE EHGGPSRVLL ASITACAEGI SLTAASRVIM LDSEWNPSKT KQAIARAFRP GQQKVVYVYQ
1201: LLSRGTLEED KYRRTTWKEW VSSMIFSEEF VEDPSQWQAE KIEDDVLREI VEEDKVKSFH MIMKNEKAST G
0101: VDAKIVSIER KPHEPECLCE FHVSIYIDQG CISSEKHRMN RASVVMGLDQ ISILQKFPKE QSVDRFYRWR YSEDSASLVK TRLTLGKFMP DLSWLLVTSV
0201: LKNTVFHIKT IQNKMVYLIM TDEESSSSSC LSAMNITVED GVYLSKVVTF NPDEDDTTLA LDYVHVEEEE SEEEEEVMEL RRSKRRNMRP DRYGFSGVQP
0301: DSKDGWVRLM PYKYSTWTDD EEGDDEDSND DRDSDDDLYL PLSHFFGKES NTKGFSKRKE SEIVLVDKTA RKKKMMMKMK MKKRDGSGGS RELSVIPFTP
0401: VFDPIPLEQF GFNANSLCSG GFSGSNLIDE MDRYRSKPSK YGKKKMLSEM DEMESDLGWI DNMSKSSVQK GTGSHSRIRS GYGKTGHSDE PQIFKRRTLS
0501: AGAYNELIES YMSNIDSTIA AKKETNSVVE QWEALKNPTS TTVEDEDGSS EDDDSEGETS ENEMLWREME LCMASSYILD DNELRVDNEA FQKATSGCEH
0601: DYELNEEIGM CCKLCGHVGS EIRDVSAPFA RQKKWTTEAK HINEEDIDTN VKQDGDERRS FTMPVATLEV PSPEESENVW SLIPQLRRKL HMHQKKAFEF
0701: LWRNLAGSVV PSMMDPSSDK IGGCVVSHTP GAGKTFLIIA FLASYLKIFP GKRPLVLAPK TTLYTWYKEF IKWEIPVPVH LIHGRRTYCV AKENKIQFKG
0801: IPKPSQDVSH VIDCLDKIQK WHAQPSVLVM GYTSFLTLMR EDSKFAHRKY MAKVLRESPG LLVLDEGHNP RSTKSRLRKA LMKVDTDLRV LLSGTLFQNN
0901: FCEYFNTLCL ARPKFIHEVL MELDEKFNTN QTVQKAPHLI ENRARKFFLD IIAKKIDTKV GDERLQGLNM LRNMTSGFID NYEGSGSGSG DVLPGLQIYT
1001: LLMNSTDLQH KTLTKLQTVM STYHGYPLEL ELLITLAAIH PWLVKTSTCC AKFFNPEELF EIEKLKHDAK KGSKVMFVLN LVFRVVKREK ILIFCHNIAP
1101: IRLFLELFEN VFRWKRGREI LTLTGDLELF DRGRVIDKFE EHGGPSRVLL ASITACAEGI SLTAASRVIM LDSEWNPSKT KQAIARAFRP GQQKVVYVYQ
1201: LLSRGTLEED KYRRTTWKEW VSSMIFSEEF VEDPSQWQAE KIEDDVLREI VEEDKVKSFH MIMKNEKAST G
0001: MKRKHYFEFN HPFNPCPFEV FCWGTWKAVE YLRIENGTMT MRLLENGQVL DDIKPFQRLR IRSRKATLID CTSFLRPGID VCVLYQRDEE TPEPVWVDAR
0101: VLSIERKPHE SECLCTFHVS VYIDQGCIGL EKHRMNKVPV LVGLNEIAIL QKFCKEQSLD RYYRWRYSED CSSLVKTRLN LGKFLPDLTW LLVTSVLKNI
0201: VFQIRTVHEK MVYQIVTDED CEGSSSSLSA MNITVEDGVV MSKVVLFNPA EDTCQDSDVK EEIEEEVMEL RRSKRRSGRP ERYGDSEIQP DSKDGWVRMM
0301: PYRYNIWNVS SDDDDEEEDC EDDKDTDDDL YLPLSHLLRK KGSKKGFSKD KQREIVLVDK TERKKRKKTE GFSRSCELSV IPFTPVFEPI PLEQFGLNAN
0401: SLCGGVSGNL MDEIDKYRSK AAKYGKKKKK KIEMEEMESD LGWNGPIGNV VHKRNGPHSR IRSVSRETGV SEEPQIYKKR TLSAGAYNKL IDSYMSRIDS
0501: TIAAKDKATN VVEQWQGLKN PASFSIEAEE RLSEEEEDDG ETSENEILWR EMELCLASSY ILDDHEVRVD NEAFHKATCD CEHDYELNEE IGMCCRLCGH
0601: VGTEIKHVSA PFARHKKWTT ETKQINEDDI NTTIVNQDGV ESHTFTIPVA SSDMPSAEES DNVWSLIPQL KRKLHLHQKK AFEFLWKNLA GSVVPAMMDP
0701: SSDKIGGCVV SHTPGAGKTF LIIAFLASYL KIFPGKRPLV LAPKTTLYTW YKEFIKWEIP VPVHLLHGRR TYCMSKEKTI QFEGIPKPSQ DVMHVLDCLD
0801: KIQKWHAQPS VLVMGYTSFL TLMREDSKFA HRKYMAKVLR ESPGLLVLDE GHNPRSTKSR LRKALMKVDT DLRILLSGTL FQNNFCEYFN TLCLARPKFV
0901: HEVLVELDKK FQTNQAEQKA PHLLENRARK FFLDIIAKKI DTKVGDERLQ GLNMLRNMTS GFIDNYEGSG SGSGDVLPGL QIYTLLMNST DVQHKSLTKL
1001: QNIMSTYHGY PLELELLITL AAIHPWLVKT TTCCAKFFNP QELLEIEKLK HDAKKGSKVM FVLNLVFRVV KREKILIFCH NIAPIRLFLE LFENVFRWKR
1101: GRELLTLTGD LELFERGRVI DKFEEPGGQS RVLLASITAC AEGISLTAAS RVIMLDSEWN PSKTKQAIAR AFRPGQQKVV YVYQLLSRGT LEEDKYRRTT
1201: WKEWVSSMIF SEEFVEDPSQ WQAEKIEDDV LREIVEEDKV KSFHMIMKNE KASTGG
0101: VLSIERKPHE SECLCTFHVS VYIDQGCIGL EKHRMNKVPV LVGLNEIAIL QKFCKEQSLD RYYRWRYSED CSSLVKTRLN LGKFLPDLTW LLVTSVLKNI
0201: VFQIRTVHEK MVYQIVTDED CEGSSSSLSA MNITVEDGVV MSKVVLFNPA EDTCQDSDVK EEIEEEVMEL RRSKRRSGRP ERYGDSEIQP DSKDGWVRMM
0301: PYRYNIWNVS SDDDDEEEDC EDDKDTDDDL YLPLSHLLRK KGSKKGFSKD KQREIVLVDK TERKKRKKTE GFSRSCELSV IPFTPVFEPI PLEQFGLNAN
0401: SLCGGVSGNL MDEIDKYRSK AAKYGKKKKK KIEMEEMESD LGWNGPIGNV VHKRNGPHSR IRSVSRETGV SEEPQIYKKR TLSAGAYNKL IDSYMSRIDS
0501: TIAAKDKATN VVEQWQGLKN PASFSIEAEE RLSEEEEDDG ETSENEILWR EMELCLASSY ILDDHEVRVD NEAFHKATCD CEHDYELNEE IGMCCRLCGH
0601: VGTEIKHVSA PFARHKKWTT ETKQINEDDI NTTIVNQDGV ESHTFTIPVA SSDMPSAEES DNVWSLIPQL KRKLHLHQKK AFEFLWKNLA GSVVPAMMDP
0701: SSDKIGGCVV SHTPGAGKTF LIIAFLASYL KIFPGKRPLV LAPKTTLYTW YKEFIKWEIP VPVHLLHGRR TYCMSKEKTI QFEGIPKPSQ DVMHVLDCLD
0801: KIQKWHAQPS VLVMGYTSFL TLMREDSKFA HRKYMAKVLR ESPGLLVLDE GHNPRSTKSR LRKALMKVDT DLRILLSGTL FQNNFCEYFN TLCLARPKFV
0901: HEVLVELDKK FQTNQAEQKA PHLLENRARK FFLDIIAKKI DTKVGDERLQ GLNMLRNMTS GFIDNYEGSG SGSGDVLPGL QIYTLLMNST DVQHKSLTKL
1001: QNIMSTYHGY PLELELLITL AAIHPWLVKT TTCCAKFFNP QELLEIEKLK HDAKKGSKVM FVLNLVFRVV KREKILIFCH NIAPIRLFLE LFENVFRWKR
1101: GRELLTLTGD LELFERGRVI DKFEEPGGQS RVLLASITAC AEGISLTAAS RVIMLDSEWN PSKTKQAIAR AFRPGQQKVV YVYQLLSRGT LEEDKYRRTT
1201: WKEWVSSMIF SEEFVEDPSQ WQAEKIEDDV LREIVEEDKV KSFHMIMKNE KASTGG
Arabidopsis Description
CHR38Chromatin remodeling 38 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTS2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.