Factsheet for Bra031634.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06321	Canola	nucleus	96.73	96.56
Bra018612.1-P	Field mustard	nucleus	66.61	14.94
HORVU3Hr1G014630.1	Barley	cytosol, nucleus, plastid	3.1	5.94
PGSC0003DMT400033315	Potato	nucleus	0.69	2.76
Bra024250.1-P	Field mustard	cytosol	5.34	2.69
Bra024192.1-P	Field mustard	nucleus	5.34	2.67
Bra007061.1-P	Field mustard	mitochondrion	7.75	2.2
Bra000888.1-P	Field mustard	cytosol	1.72	2.18
Bra021058.1-P	Field mustard	nucleus	3.96	1.81
Bra022395.1-P	Field mustard	nucleus	2.75	1.75
PGSC0003DMT400004673	Potato	nucleus	2.75	1.75
PGSC0003DMT400037430	Potato	nucleus	1.89	1.64
PGSC0003DMT400096321	Potato	nucleus	0.34	1.6
Bra015430.1-P	Field mustard	nucleus	4.3	1.58
Bra021841.1-P	Field mustard	cytosol	2.07	1.57
Bra002302.1-P	Field mustard	cytosol	3.27	1.52
Bra001944.1-P	Field mustard	nucleus	2.75	1.5
PGSC0003DMT400017313	Potato	nucleus	3.1	1.49
PGSC0003DMT400004672	Potato	nucleus	2.41	1.41
PGSC0003DMT400038789	Potato	nucleus	2.58	1.36
PGSC0003DMT400090992	Potato	mitochondrion	0.52	1.22
Bra032544.1-P	Field mustard	nucleus	3.27	1.16
Bra015035.1-P	Field mustard	nucleus	1.89	1.06
PGSC0003DMT400004629	Potato	nucleus	1.38	0.9
PGSC0003DMT400017302	Potato	nucleus	0.69	0.64
PGSC0003DMT400085944	Potato	cytosol	0.17	0.43
PGSC0003DMT400085993	Potato	cytosol	0.0	0.0
PGSC0003DMT400088837	Potato	cytosol	0.0	0.0
Solyc08g061350.1.1	Tomato	mitochondrion	0.0	0.0
Zm00001d047708_P001	Maize	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Bra031634.1	EnsemblPlants:Bra031634.1-P	EnsemblPlantsGene:Bra031634	ncoils:Coil	SEG:seg	UniParc:UPI0002543304
UniProt:M4ES56	MapMan:35.1	:	:	:	:

Description

AT1G08600 (E=7e-134) ATRX, CHR20 | ATRX; ATP binding / DNA binding / helicase/ nucleic acid binding

Coordinates

chrA09:-:35475424..35478565

Molecular Weight (calculated)

65964.2 Da

IEP (calculated)

4.223

GRAVY (calculated)

-0.833

Length

581 amino acids

Sequence
(BLAST)

001: MAARDDNDDP MEAKEEENIN ESIMEMQDDQ QMEENNNQDE EMQAVDTRSE SCVSLSDDEE QLLMGHDDES DLEKPLSEEE IDELISELVG VESKAAEAQK
101: AIEEESLATV EGEVREKLAR TLRLDKSVSA EMMTFKDVRE ETLDNLEIKS ANLLEQLSGA GVELPKLYKM IESQVPSRLY TEAWKKRAHW VGTQVTEETV
201: ESLANAESFL QTHRPVRKRH GELLEEGASG FLEKFFADNG VKESQAGPSE LDWLSLNKVF TEKKDEAVSF GSKNWASLYS ASTPQQAAAM GLEFPGVNEV
301: EEIEEIDADL EGTFFADAME NERVLAQTEE QKKDYTRARE DDDINIDLQL CLNRKRRKTR SKQVIRHTAE NSDDESACLY VNNTVPNPAE DQVKCLETST
401: QFQNNEDDKE ENVNLSNSDV DEMVPVTDSN AEDSQNTSKK QKVGCCSDKL VENLLQIHNP NWISSLHEHE TFLKENEEEN PTMEEKDMAW EVYRRALEWK
501: GVQRVAPELQ KPLPSPQTVT PRLPKRFNRS RFVIRNCTRT AHQRTLISQG SKVGSSTVCG ECGLVLTWED VTTPAPKIDY F

Best Arabidopsis Sequence Match ( AT1G08600.1 )
(BLAST)

0001: MEANEESLKG KIEKLEGKEV IVESKEDEMD IIIEENREAE QEVMEVKARD GRGEQNDVLM EENNNQGEQK DEEMQDASSR SESSDFNSDE DEQILSRRDD
0101: ELDLEKPLSE EEIDELISDL LAVESKAAEA QEALEKESLS KVESEVREEL AQALRGDELD EAVAAEMMTF KDEWEATLDE LETESATLLE QLDGAGIELP
0201: KLYEMIESQA PNGCYTEAWK QRAHWVGTQV TKETVESLAN AERFLHTHRP VRKRHGKLLE EGASGFLEKK LADGAVKESL AGTSELDWSS LNKVFSEKRD
0301: ESVSFGSKQW ASVYLASTPH QAAAMGLEFP GVNEVEEIEE IDASLADPFL ADAIDNEREL ALTEEQKTNY IRVKEEDDIT CDRVLQLRLK RKRRKKRSKQ
0401: VIRCAAENMD DDSVYLDGNN TTPNFAKDQV KSPETSTQVH NSEVNIEENG NFSNSDVDKM TPSTHINVDA KRDDSQNPAN NFRCTACNKV AVEVHSHPLL
0501: EVIVCMDCKR SIEDRVSKVD DSLERHCEWC GHIADLIDCR TCEKLFCASC IKRNIGEEYM SEAQSSGWDC CCCSPIPLQR LTLELEKAMR DKKSIELSSD
0601: SSSDSSSDNN SVDTDADVNV TISSKKKSKK KIRRIIDDAE LGKDTRTKIA IEKARQERLR SLQFSARYKT ISSMGDVKSI PEGAEVEVLG DAHSGYIVNV
0701: VREIGEEAVR VPRSISAKLK VHQVTGIRFM WENIIQSISR VKSGDKGLGC ILAHTMGLGK TFQVIAFLYT AMRCVDLGLK TALIVTPVNV LHNWRSEFEK
0801: WMPSEVKPLR IFMLGDVSRY KFFYERNFWG VKDLNAARGI CNALRDGPDI LVCDEAHIIK NTKADTTQAL KQVKCQRRIA LTGSPLQNNL MEYYCMVDFV
0901: REGFLGSSPE FRNRFQNPIE NGQHMNSTAE DVKIMNQRSH ILYEQLKGFV QRMDMNVVKK DLPPKTVFVI SVKLSPLQRI LYQRFLELYG FSDGRTDERM
1001: RKNFFAAYQV LAQILNHPGI PQLRSEDSKN GRRGSIVDIP DDCSSDENID YNMVTGEKQR TMNDLQDKVD GYLQKDWWVD LLQKNNYKVS DFSGKMILLL
1101: DILSMSADVG DKALVFSQSI PTLDLIELYL SRVPRHGKQG KFWKKGKDWY RIDGKTESSE RQKLVDRFNE PDNKRVKCTL ISTRAGSLGI NLYAANRVII
1201: VDGSWNPTYD LQAIFRAWRY GQKKPVFAYR LMARGTIEEK IYKRQVTKEG LAARVVDRQQ VHRTISKEEM LHLFEFDDDD EKSEAVTEIS KQNEAGHSNL
1301: VEQAILWTKK ATLSRVGGDK LMENLLQRHG PNWISSFHEH ETLLQENEEE RLTKEEKDMA WEVYRRALEW EEVQRVPFSE SPVVPKPSPS TQTEPLPQPK
1401: GFNRSRFVNR NCTRIAHQLT LISQGLKVGS STVCGECGRV IRWEDVIPAS KLSAVIVN

Arabidopsis Description

ATRXCHR20 [Source:UniProtKB/TrEMBL;Acc:A0A178VZQ9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.