Factsheet for Bra022395.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002334.1-P
Bra006580.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G19210.1	Bra002334.1-P	AT5G20850.1	17227544
AT3G19210.1	Bra006580.1-P	AT5G20850.1	17227544
AT3G19210.1	Bra002334.1-P	AT5G20850.1	18430956
AT3G19210.1	Bra006580.1-P	AT5G20850.1	18430956

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92308	Canola	nucleus	98.9	99.12
CDX99258	Canola	nucleus	97.37	98.02
AT3G19210.1	Thale cress	nucleus	89.49	89.78
KRH77966	Soybean	nucleus	67.36	68.33
HORVU1Hr1G071540.2	Barley	nucleus	19.61	65.57
HORVU7Hr1G119270.3	Barley	nucleus	20.04	65.36
Solyc04g056410.2.1	Tomato	nucleus	41.73	64.91
Solyc04g056400.2.1	Tomato	cytosol, nucleus, plastid	25.85	63.96
GSMUA_Achr5P24600_001	Banana	nucleus	64.4	62.95
VIT_03s0063g00580.t01	Wine grape	nucleus	67.36	62.88
EES07568	Sorghum	nucleus	64.84	61.03
HORVU6Hr1G078680.2	Barley	nucleus	64.95	60.7
Zm00001d018151_P003	Maize	nucleus	64.29	60.64
TraesCS6A01G321200.1	Wheat	nucleus	64.62	60.64
Os02t0762800-00	Rice	nucleus	64.95	60.51
TraesCS6B01G351900.1	Wheat	nucleus	63.86	58.13
TraesCS6D01G300900.1	Wheat	cytosol	64.18	55.34
Bra024192.1-P	Field mustard	nucleus	20.37	16.02
Bra021841.1-P	Field mustard	cytosol	13.14	15.71
Bra024250.1-P	Field mustard	cytosol	19.06	15.09
Bra001944.1-P	Field mustard	nucleus	14.68	12.57
Bra015035.1-P	Field mustard	nucleus	14.13	12.38
Bra032544.1-P	Field mustard	nucleus	21.14	11.75
Bra000888.1-P	Field mustard	cytosol	5.81	11.55
Bra002302.1-P	Field mustard	cytosol	14.02	10.27
Bra021058.1-P	Field mustard	nucleus	14.02	10.07
Bra007061.1-P	Field mustard	mitochondrion	20.04	8.94
Bra015430.1-P	Field mustard	nucleus	14.68	8.46
Bra018612.1-P	Field mustard	nucleus	22.67	7.99
Bra031634.1-P	Field mustard	nucleus	1.75	2.75

Protein Annotations

Gene3D:1.20.120.850	MapMan:12.4.1.3.1	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra022395	EnsemblPlants:Bra022395.1
EnsemblPlants:Bra022395.1-P	ncoils:Coil	GO:GO:0000166	GO:GO:0000724	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009628	GO:GO:0009987	GO:GO:0010332	GO:GO:0045003	GO:GO:0051701	GO:GO:0071248
GO:GO:0071480	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR038718
UniProt:M4E0U8	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR10799	PANTHER:PTHR10799:SF889	SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N
SUPFAM:SSF52540	UniParc:UPI0002547EAF	SEG:seg	:	:	:

Description

AT3G19210 (E=0.0) ATRAD54, CHR25 | ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54); ATP binding / DNA binding / helicase/ nucleic acid binding

Coordinates

chrA05:+:17960566..17967861

Molecular Weight (calculated)

101969.0 Da

IEP (calculated)

5.770

GRAVY (calculated)

-0.532

Length

913 amino acids

Sequence
(BLAST)

001: MEEEEEVVIS SSDSEDSSDS YEEESQDSEG EYENSDENPD CEDLAAVSPP SDADRKSKNV NDLLRGNLVV QRQPLLPRVL SVSEGAAVCR KPFKPPCSHG
101: YNTTGQLSRR LSARKRFVPW GSSSPVVVVL PTKLNESTTI ERDEEEEAVS LPPEVEPLVL WQLEESDDAT KITVHPLLVR FLRPHQREGV QFMFDCVSGL
201: HGSENINGCI LADDMGLGKT LQSITLLYTL LCQGFDGTPM VKKAIIVTPT SLVSNWEAEI KKWVGDRIQL IALCESTRDD VLSGIDSFTR PRSALQVLII
301: SYETFRMHSS KFGQTGSCDL LICDEAHRLK NDQTLTNKAL ASLTCKRRVL LSGTPMQNDL EEFFAMVNFT NPGSLGDASH FRHYFEAPII CGREPTATEE
401: EKNLAAERSA ELSSKVNQFI LRRTNALLSN HLPPKIIEVV CCKMTTLQST LYNHFISSKN LKRALADNAK QTKVLAYITA LKKLCNHPKL IYDTIKSKSP
501: GTIGFEDCLE FFPAEMFSGR SGAWTGGDGA WVELSGKMHV LSRLLANLRR NTDDRIVLVS NYTQTLDLFA QLCRERRYPY LRLDGSTSIS KRQKLVNRLN
601: DPTKDEFAFL LSSKAGGCGL NLIGANRLVL FDPDWNPAND KQAAARVWRD GQKKRVYVYR FLSTGTIEEK VYQRQMSKEG LQKVIQHEQT DNSTRQGNLL
701: STEDLRDLFS FHGDVTSEIH GKMSCSRCQN DASGTENTEE GNENNLDDSA CQTDQEDIGG FANDAGCLHS LKISERQVGT PLEEDLASWG HHSTSKSVPD
801: MILQASAGDE VTFVFTNQVD GKLIPIKSNP SPKPEVTETG RNRNQAVSNR GFNKPQQRPR EPLQPLSPNE TNKRVKLSTY KRLHCTSNTD GAQMQMPLQR
901: PNQVSVNHDD DFV

Best Arabidopsis Sequence Match ( AT3G19210.1 )
(BLAST)

001: MEEEDEEILS SSDCDDSSDS YKDDSQDSEG ENDNPECEDL AVVSLSSDAD RKSKNVKDLL RGNLVVQRQP LLPRVLSVSD GAAVCRKPFK PPCSHGYDST
101: GQLSRRLSAR KRFVPWGSST PVVVALPTKL EASTNIERDE EEEVVCLPPD IEPLVLWQSE EDGMSNVTTI MVHSVLVKFL RPHQREGVQF MFDCVSGLHG
201: SANINGCILA DDMGLGKTLQ SITLLYTLLC QGFDGTPMVK KAIIVTPTSL VSNWEAEIKK WVGDRIQLIA LCESTRDDVL SGIDSFTRPR SALQVLIISY
301: ETFRMHSSKF CQSESCDLLI CDEAHRLKND QTLTNRALAS LTCKRRVLLS GTPMQNDLEE FFAMVNFTNP GSLGDAAHFR HYYEAPIICG REPTATEEEK
401: NLAADRSAEL SSKVNQFILR RTNALLSNHL PPKIIEVVCC KMTTLQSTLY NHFISSKNLK RALADNAKQT KVLAYITALK KLCNHPKLIY DTIKSGNPGT
501: VGFENCLEFF PAEMFSGRSG AWTGGDGAWV ELSGKMHVLS RLLANLRRKT DDRIVLVSNY TQTLDLFAQL CRERRYPFLR LDGSTTISKR QKLVNRLNDP
601: TKDEFAFLLS SKAGGCGLNL IGANRLVLFD PDWNPANDKQ AAARVWRDGQ KKRVYVYRFL STGTIEEKVY QRQMSKEGLQ KVIQHEQTDN STRQGNLLST
701: EDLRDLFSFH GDVRSEIHEK MSCSRCQNDA SGTENIEEGN ENNVDDNACQ IDQEDIGGFA KDAGCFNLLK NSERQVGTPL EEDLGSWGHH FTSKSVPDAI
801: LQASAGDEVT FVFTNQVDGK LVPIESNVSP KTVESEEHNR NQPVNKRAFN KPQQRPREPL QPLSLNETTK RVKLSTYKRL HGNSNIDDAQ IKMSLQRPNL
901: VSVNHDDDFV

Arabidopsis Description

CHR25Protein CHROMATIN REMODELING 25 [Source:UniProtKB/Swiss-Prot;Acc:Q0PCS3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.