Factsheet for Bra006580.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002334.1-P
Bra005674.1-P
Bra006580.1-P
Bra022395.1-P
Bra023796.1-P
Bra024159.1-P
Bra025394.1-P
Bra036215.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20850.1	Bra022395.1-P	AT3G19210.1	17227544
AT5G20850.1	Bra022395.1-P	AT3G19210.1	18430956
AT5G20850.1	Bra023796.1-P	AT3G22880.1	15014444
AT5G20850.1	Bra023796.1-P	AT3G22880.1	16415210
AT5G20850.1	Bra025394.1-P	AT3G29350.1	17937504
AT5G20850.1	Bra036215.1-P	AT3G29350.1	17937504
AT5G20850.1	Bra024159.1-P	AT4G29170.1	17937504
AT5G20850.1	Bra005674.1-P	AT5G01630.1	15014444
AT5G20850.1	Bra005674.1-P	AT5G01630.1	16415210
AT5G20850.1	Bra002334.1-P	AT5G20850.1	15014444
AT5G20850.1	Bra006580.1-P	AT5G20850.1	15014444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G20850.1	Thale cress	cytosol	99.12	99.12
Bra002334.1-P	Field mustard	cytosol	98.25	98.25
CDX88837	Canola	cytosol	92.98	98.15
CDX70947	Canola	cytosol	92.98	98.15
VIT_11s0016g00340.t01	Wine grape	cytosol	89.47	90.8
Solyc07g017540.2.1	Tomato	cytosol	89.47	89.47
KRH02540	Soybean	cytosol	88.3	88.05
KRH19405	Soybean	cytosol	88.3	87.79
Zm00001d041757_P001	Maize	cytosol	86.55	87.06
Os11t0615800-01	Rice	cytosol	86.26	87.02
TraesCS7D01G381300.1	Wheat	cytosol	86.55	86.55
TraesCS7A01G384800.1	Wheat	cytosol	86.26	86.01
TraesCS7B01G287700.1	Wheat	cytosol	85.96	85.71
Os12t0497300-01	Rice	cytosol	85.38	85.63
Zm00001d021898_P001	Maize	cytosol	85.09	85.59
EER99597	Sorghum	cytosol	85.38	84.88
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	27.78	84.82
OQU83843	Sorghum	cytosol	85.38	83.67
OQU79150	Sorghum	cytosol	85.38	82.95
HORVU7Hr1G091450.2	Barley	cytosol, nucleus	85.38	79.13
Bra023796.1-P	Field mustard	nucleus	48.54	50.0
Bra001890.1-P	Field mustard	nucleus	11.4	46.43
Bra004897.1-P	Field mustard	nucleus	27.19	25.14
Bra006820.1-P	Field mustard	mitochondrion	23.1	23.87
Bra037372.1-P	Field mustard	extracellular, nucleus, plastid	15.5	20.46
Bra035691.1-P	Field mustard	cytosol	23.98	17.67

Protein Annotations

Gene3D:1.10.150.20	MapMan:14.3.2.4	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	EnsemblPlantsGene:Bra006580	EnsemblPlants:Bra006580.1
EnsemblPlants:Bra006580.1-P	InterPro:DNA_recomb/repair_Rad51	InterPro:DNA_recomb/repair_Rad51_C	InterPro:DNA_recomb/repair_RecA-like	InterPro:DNA_repair_Rad51/TF_NusA_a-hlx	GO:GO:0000150
GO:GO:0000166	GO:GO:0000724	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690
GO:GO:0003697	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005694	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281
GO:GO:0006302	GO:GO:0006310	GO:GO:0006355	GO:GO:0006950	GO:GO:0006974	GO:GO:0007049
GO:GO:0008094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009987
GO:GO:0010332	GO:GO:0016787	GO:GO:0045003	GO:GO:1990426	InterPro:IPR020587	InterPro:IPR020588
UniProt:M4CQT9	InterPro:P-loop_NTPase	PFAM:PF08423	PIRSF:PIRSF005856	PFscan:PS50162	PFscan:PS50163
PANTHER:PTHR22942	PANTHER:PTHR22942:SF45	InterPro:Rad51_DMC1_RadA	InterPro:RecA_ATP-bd	InterPro:RecA_monomer-monomer_interface	SMART:SM00382
SUPFAM:SSF47794	SUPFAM:SSF52540	TIGRFAMs:TIGR02239	UniParc:UPI0002540057	:	:

Description

AT5G20850 (E=6e-192) ATRAD51, RAD51 | ATRAD51; ATP binding / DNA binding / DNA-dependent ATPase/ damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / sequence-specific DNA binding

Coordinates

chrA03:-:4142792..4144740

Molecular Weight (calculated)

37340.7 Da

IEP (calculated)

5.996

GRAVY (calculated)

-0.233

Length

342 amino acids

Sequence
(BLAST)

001: MTTMEQRRNQ NTVQQQDDEE TQHGPFPVEQ LQAAGIASVD VKKLRDAGLC TVEGVAYTPR KDLLQIKGIS DAKVDKIVEA ASKLVPLGFT SASQLHAQRQ
101: EIIQITSGSR ELDKVLEGGI ETGSITELYG EFRSGKTQLC HTLCVTCQLP MDQGGGEGKA MYIDAEGTFR PQRLLQIADR FGLNGADVLE NVAYARAYNT
201: DHQSRLLLEA ASMMVETRFA LMIVDSATAL YRTDFSGRGE LSARQMHLAK FLRSLQKLAD EFGVAVVITN QVVAQVDGSA LFAGPQFKPI GGNIMAHATT
301: TRLALRKGRA EERICKVISS PCLPEAEARF QISTEGVTDC KD

Best Arabidopsis Sequence Match ( AT5G20850.1 )
(BLAST)

001: MTTMEQRRNQ NAVQQQDDEE TQHGPFPVEQ LQAAGIASVD VKKLRDAGLC TVEGVAYTPR KDLLQIKGIS DAKVDKIVEA ASKLVPLGFT SASQLHAQRQ
101: EIIQITSGSR ELDKVLEGGI ETGSITELYG EFRSGKTQLC HTLCVTCQLP MDQGGGEGKA MYIDAEGTFR PQRLLQIADR FGLNGADVLE NVAYARAYNT
201: DHQSRLLLEA ASMMIETRFA LLIVDSATAL YRTDFSGRGE LSARQMHLAK FLRSLQKLAD EFGVAVVITN QVVAQVDGSA LFAGPQFKPI GGNIMAHATT
301: TRLALRKGRA EERICKVISS PCLPEAEARF QISTEGVTDC KD

Arabidopsis Description

RAD51DNA repair protein RAD51 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:P94102]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.