Factsheet for Bra006820.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88622	Canola	cytosol, mitochondrion, nucleus, plastid	80.36	86.93
AT5G57450.2	Thale cress	nucleus	70.09	76.32
Bra037372.1-P	Field mustard	extracellular, nucleus, plastid	55.59	71.04
VIT_11s0052g00940.t01	Wine grape	cytosol, nucleus, plastid	51.36	56.67
PGSC0003DMT400052651	Potato	nucleus	46.83	54.01
KRH01614	Soybean	nucleus	46.53	53.47
Solyc07g055170.1.1	Tomato	cytosol	45.32	52.63
GSMUA_Achr9P13630_001	Banana	cytosol	42.6	50.0
TraesCS6D01G182800.1	Wheat	cytosol, nucleus, plastid	35.95	41.9
TraesCS6B01G229400.1	Wheat	cytosol, nucleus, plastid	35.95	41.9
Os02t0562100-00	Rice	plastid	35.95	41.03
Zm00001d016839_P001	Maize	plastid	35.95	40.89
TraesCS6A01G199100.1	Wheat	cytosol, nucleus, peroxisome	35.35	38.36
OQU85146	Sorghum	plastid	35.95	37.42
HORVU6Hr1G046290.5	Barley	plastid	35.95	31.48
Bra001890.1-P	Field mustard	nucleus	6.34	25.0
Bra006580.1-P	Field mustard	cytosol	23.87	23.1
Bra002334.1-P	Field mustard	cytosol	23.87	23.1
Bra004897.1-P	Field mustard	nucleus	22.05	19.73
Bra023796.1-P	Field mustard	nucleus	18.43	18.37
Bra035691.1-P	Field mustard	cytosol	21.75	15.52

Protein Annotations

MapMan:13.3.6.4.3.2	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra006820	EnsemblPlants:Bra006820.1	EnsemblPlants:Bra006820.1-P	InterPro:DNA_recomb/repair_Rad51_C
InterPro:DNA_recomb/repair_RecA-like	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950
GO:GO:0008094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	InterPro:IPR020588
UniProt:M4CRH9	InterPro:P-loop_NTPase	PFAM:PF08423	PIRSF:PIRSF005856	PFscan:PS50162	PANTHER:PTHR22942
PANTHER:PTHR22942:SF24	InterPro:Rad51_DMC1_RadA	InterPro:RecA_ATP-bd	SUPFAM:SSF52540	UniParc:UPI000253FCA6	SEG:seg

Description

AT5G57450 (E=3e-126) XRCC3, ATXRCC3 | XRCC3; ATP binding / damaged DNA binding / protein binding / single-stranded DNA binding

Coordinates

chrA03:+:5190502..5192164

Molecular Weight (calculated)

36757.8 Da

IEP (calculated)

7.983

GRAVY (calculated)

-0.220

Length

331 amino acids

Sequence
(BLAST)

001: MKPRSLLSQS PTTSLKLTTG CETLDACLHG GFPCDSLTEN VAESGCGKKQ LCLQLSLCAQ LPISNGGLDG SALYLHSEFP FPFRRLHQLS RSFHLSNPSI
101: YADHNDNPCD HVFIQNVHNV DHLFDVMSKI ESFVKNSKTR LPLKLIVLDS VAALFRSEFE NTPSDLRKRA SCFFKISGKL KQLANKFGLA VVITNQVTDF
201: VESSDGLSGL RIGNLRCLYS SGRRVVPALG LAWANCVNSR VFISRSDDSI CQERREDDER SGSSYVSRRA RRRFDIVFSP YLPASSCEFV ITGEGICGRD
301: AEKMDSTFLE SGMVVREHQI DTRSLDKIAS T

Best Arabidopsis Sequence Match ( AT5G57450.2 )
(BLAST)

001: MQNGKIKPEN LLRRSPTNRK LTTGCEILDG CLRGGISCDS LTEIVAESGC GKTQLCLQLS LCTQLPISHG GLNGSSLYLH SEFPFPFRRL HQLSHTFHQS
101: NPSIYANYND NPCDHVFVQN VHSVDHLFDI MPRIDGFVGN SKTRFPLKLI VLDSVAALFR SEFDNTPSDL KKRSSLFFKI SGKLKQLASK FDLAIVITNQ
201: VTDLVETSDG LSGLRIGNLR YLYSSGRRVV PSLGLAWANC VNSRFFISRS DGSIVKDRSE KDENCSSSVS RSAKRRLDIV FSPYLPGSSC EFMITREGIC
301: AVQA

Arabidopsis Description

XRCC3DNA repair protein XRCC3 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FKM5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.