Factsheet for Os02t0562100-00

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016839_P001	Maize	plastid	84.83	84.54
TraesCS6D01G182800.1	Wheat	cytosol, nucleus, plastid	79.66	81.34
TraesCS6B01G229400.1	Wheat	cytosol, nucleus, plastid	79.66	81.34
OQU85146	Sorghum	plastid	84.83	77.36
TraesCS6A01G199100.1	Wheat	cytosol, nucleus, peroxisome	80.34	76.39
GSMUA_Achr9P13630_001	Banana	cytosol	61.38	63.12
HORVU6Hr1G046290.5	Barley	plastid	78.28	60.05
KRH01614	Soybean	nucleus	48.28	48.61
VIT_11s0052g00940.t01	Wine grape	cytosol, nucleus, plastid	49.66	48.0
Solyc07g055170.1.1	Tomato	cytosol	44.14	44.91
PGSC0003DMT400052651	Potato	nucleus	44.14	44.6
AT5G57450.2	Thale cress	nucleus	42.41	40.46
CDY11869	Canola	cytosol	29.31	36.96
Bra006820.1-P	Field mustard	mitochondrion	41.03	35.95
Bra037372.1-P	Field mustard	extracellular, nucleus, plastid	29.66	33.2
CDX88622	Canola	cytosol, mitochondrion, nucleus, plastid	33.79	32.03
Os11t0615800-01	Rice	cytosol	27.59	23.6
Os12t0497300-01	Rice	cytosol	27.24	23.17
Os05t0121700-02	Rice	cytosol, mitochondrion, nucleus, plastid	25.52	20.39
Os12t0143800-01	Rice	mitochondrion	23.79	20.06
Os11t0146800-01	Rice	nucleus	23.45	19.77
Os01t0578000-01	Rice	cytosol	22.41	18.62

Protein Annotations

MapMan:13.3.6.4.3.2	Gene3D:3.40.50.300	ProteinID:BAD16552.1	ProteinID:BAF09064.1	ProteinID:BAS79274.1	InterPro:DNA_recomb/repair_Rad51_C
InterPro:DNA_recomb/repair_RecA-like	ProteinID:EAZ23462.1	GO:GO:0000003	GO:GO:0000150	GO:GO:0000166	GO:GO:0000400
GO:GO:0000707	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003690	GO:GO:0003697
GO:GO:0003824	GO:GO:0004518	GO:GO:0004520	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005657	GO:GO:0006139	GO:GO:0006259
GO:GO:0006281	GO:GO:0006312	GO:GO:0006950	GO:GO:0007049	GO:GO:0007131	GO:GO:0008094
GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009987	GO:GO:0010212	GO:GO:0016043
GO:GO:0016787	GO:GO:0033063	GO:GO:0042148	InterPro:IPR020588	EMBL:KM983395	EnsemblPlantsGene:Os02g0562100
EnsemblPlants:Os02t0562100-00	InterPro:P-loop_NTPase	PFAM:PF08423	PIRSF:PIRSF005856	PRINTS:PR01874	PFscan:PS50162
PANTHER:PTHR22942	PANTHER:PTHR22942:SF24	UniProt:Q6YU07	InterPro:RecA_ATP-bd	SUPFAM:SSF52540	UniParc:UPI0000358D85
SEG:seg	:	:	:	:	:

Description

XRCC3DNA repair and recombination, RecA-like domain containing protein. (Os02t0562100-00)

Coordinates

chr2:+:21312002..21312874

Molecular Weight (calculated)

31115.8 Da

IEP (calculated)

11.279

GRAVY (calculated)

0.011

Length

290 amino acids

Sequence
(BLAST)

001: MRPAAPARHP SAAASSSSST NSQQEPRPEN PLLLLPSSRA GKLSLGCPVL DRLLSGGLPP ASVTEIAGES ASGKTQLCLQ LALLAPLSPL SASCLFLHSD
101: LPFPLRRLRG LAPKSRPDLL DHVLVAAAHS PSDLISLLSR AQRLLAHPGR LPPVRLILVD SIASLFRADF DASPADLKRR SALFFRISAK LKELAHRHRC
201: VVVVTNQVVD VVEGEAGNTV AWSSGRRVSP ALGIAWANCV NTRLFLTRDA DGRGCARRRM KVAFAPHLPE RACEFVIRRD GVFGVEPSGR

Best Arabidopsis Sequence Match ( AT5G57450.2 )
(BLAST)

001: MQNGKIKPEN LLRRSPTNRK LTTGCEILDG CLRGGISCDS LTEIVAESGC GKTQLCLQLS LCTQLPISHG GLNGSSLYLH SEFPFPFRRL HQLSHTFHQS
101: NPSIYANYND NPCDHVFVQN VHSVDHLFDI MPRIDGFVGN SKTRFPLKLI VLDSVAALFR SEFDNTPSDL KKRSSLFFKI SGKLKQLASK FDLAIVITNQ
201: VTDLVETSDG LSGLRIGNLR YLYSSGRRVV PSLGLAWANC VNSRFFISRS DGSIVKDRSE KDENCSSSVS RSAKRRLDIV FSPYLPGSSC EFMITREGIC
301: AVQA

Arabidopsis Description

XRCC3DNA repair protein XRCC3 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FKM5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.