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Wine grape
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Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:
  • plastid 3
  • cytosol 1
  • nucleus 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc07g055170.1.1 Tomato cytosol 60.33 63.51
PGSC0003DMT400052651 Potato nucleus 60.0 62.72
GSMUA_Achr9P13630_001 Banana cytosol 58.67 62.41
KRH01614 Soybean nucleus 58.0 60.42
AT5G57450.2 Thale cress nucleus 55.33 54.61
Bra006820.1-P Field mustard mitochondrion 56.67 51.36
TraesCS6D01G182800.1 Wheat cytosol, nucleus, plastid 48.0 50.7
Zm00001d016839_P001 Maize plastid 49.0 50.52
TraesCS6B01G229400.1 Wheat cytosol, nucleus, plastid 47.67 50.35
Os02t0562100-00 Rice plastid 48.0 49.66
CDY11869 Canola cytosol 37.33 48.7
TraesCS6A01G199100.1 Wheat cytosol, nucleus, peroxisome 47.67 46.89
OQU85146 Sorghum plastid 47.33 44.65
CDX88622 Canola cytosol, mitochondrion, nucleus, plastid 44.67 43.79
Bra037372.1-P Field mustard extracellular, nucleus, plastid 37.33 43.24
HORVU6Hr1G046290.5 Barley plastid 47.33 37.57
VIT_11s0016g00340.t01 Wine grape cytosol 29.0 25.82
VIT_15s0048g00380.t01 Wine grape nucleus 25.33 21.97
VIT_05s0020g04170.t01 Wine grape nucleus 25.33 21.84
VIT_06s0004g03600.t01 Wine grape cytosol, nucleus, plastid 27.0 21.83
Protein Annotations
EntrezGene:100251380wikigene:100251380MapMan:13.3.6.4.3.2Gene3D:3.40.50.300ProteinID:CCB44651ProteinID:CCB44651.1
InterPro:DNA_recomb/repair_Rad51_CInterPro:DNA_recomb/repair_RecA-likeUniProt:F6GXG5EMBL:FN594964GO:GO:0000003GO:GO:0000150
GO:GO:0000166GO:GO:0000400GO:GO:0000707GO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0003690GO:GO:0003697GO:GO:0003824GO:GO:0004518GO:GO:0004520GO:GO:0005488
GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005657
GO:GO:0006139GO:GO:0006259GO:GO:0006281GO:GO:0006302GO:GO:0006312GO:GO:0006950
GO:GO:0007049GO:GO:0007131GO:GO:0008094GO:GO:0008150GO:GO:0008152GO:GO:0009628
GO:GO:0009987GO:GO:0010212GO:GO:0015074GO:GO:0016043GO:GO:0016787GO:GO:0033063
GO:GO:0042148GO:GO:0045003GO:GO:0051321InterPro:IPR020588EntrezGene:LOC100251380wikigene:LOC100251380
InterPro:P-loop_NTPasePFAM:PF08423PIRSF:PIRSF005856PFscan:PS50162PANTHER:PTHR22942PANTHER:PTHR22942:SF24
InterPro:Rad51_DMC1_RadAInterPro:RecA_ATP-bdSUPFAM:SSF52540UniParc:UPI00015CC2EFArrayExpress:VIT_11s0052g00940EnsemblPlantsGene:VIT_11s0052g00940
EnsemblPlants:VIT_11s0052g00940.t01RefSeq:XP_002268968RefSeq:XP_002268968.1SEG:seg::
Description
No Description!
Coordinates
chr11:+:18570410..18571470
Molecular Weight (calculated)
32478.5 Da
IEP (calculated)
8.409
GRAVY (calculated)
0.208
Length
300 amino acids
Sequence
(BLAST)
001: MIPQNLLQNP LALTTQKCTL GCPILDRCLA GGVPCNSITE LVAESGSGKT QLCLQLVLSA QLPTSLGGLA ASSLYIHSEF PFPSRRLQQL SQSFRSSYSH
101: VLDSEYNPLD FVLVRGVQSA DQLFDVLLKM DSVLLRPPTQ LPVRLIVIDS IAALFRGEFE NTPFDLKRRS SLFFKISGKL KALAERFGLA VVVTNQVVDF
201: VGQAGGLNGL RVGNLGSLWS SGRRVCAALG LSWANCVNSR LFLSRNEEIV GEVTGLGGVG AGDTVSRLTR RHLHVIFAPH LPESSCEFVI SREGVLGVER
Best Arabidopsis Sequence Match ( AT5G57450.2 )
(BLAST)
001: MQNGKIKPEN LLRRSPTNRK LTTGCEILDG CLRGGISCDS LTEIVAESGC GKTQLCLQLS LCTQLPISHG GLNGSSLYLH SEFPFPFRRL HQLSHTFHQS
101: NPSIYANYND NPCDHVFVQN VHSVDHLFDI MPRIDGFVGN SKTRFPLKLI VLDSVAALFR SEFDNTPSDL KKRSSLFFKI SGKLKQLASK FDLAIVITNQ
201: VTDLVETSDG LSGLRIGNLR YLYSSGRRVV PSLGLAWANC VNSRFFISRS DGSIVKDRSE KDENCSSSVS RSAKRRLDIV FSPYLPGSSC EFMITREGIC
301: AVQA
Arabidopsis Description
XRCC3DNA repair protein XRCC3 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FKM5]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.