Factsheet for Os11t0615800-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0164800-01
Os01t0164900-01
Os02t0762800-00
Os09t0280600-01
Os11t0146800-01
Os11t0615800-01
Os12t0143800-01
Os12t0497300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20850.1	Os02t0762800-00	AT3G19210.1	17227544
AT5G20850.1	Os02t0762800-00	AT3G19210.1	18430956
AT5G20850.1	Os11t0146800-01	AT3G22880.1	15014444
AT5G20850.1	Os12t0143800-01	AT3G22880.1	15014444
AT5G20850.1	Os11t0146800-01	AT3G22880.1	16415210
AT5G20850.1	Os12t0143800-01	AT3G22880.1	16415210
AT5G20850.1	Os09t0280600-01	AT4G29170.1	17937504
AT5G20850.1	Os01t0164800-01	AT5G01630.1	15014444
AT5G20850.1	Os01t0164900-01	AT5G01630.1	15014444
AT5G20850.1	Os01t0164800-01	AT5G01630.1	16415210
AT5G20850.1	Os01t0164900-01	AT5G01630.1	16415210
AT5G20850.1	Os11t0615800-01	AT5G20850.1	15014444
AT5G20850.1	Os12t0497300-01	AT5G20850.1	15014444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021898_P001	Maize	cytosol	94.69	94.41
EER99597	Sorghum	cytosol	94.69	93.31
OQU83843	Sorghum	cytosol	95.28	92.55
Os12t0497300-01	Rice	cytosol	91.74	91.2
VIT_11s0016g00340.t01	Wine grape	cytosol	89.68	90.21
Solyc07g017540.2.1	Tomato	cytosol	88.5	87.72
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	28.61	86.61
KRH02540	Soybean	cytosol	87.61	86.59
AT5G20850.1	Thale cress	cytosol	87.32	86.55
KRH19405	Soybean	cytosol	87.61	86.34
Bra006580.1-P	Field mustard	cytosol	87.02	86.26
Bra002334.1-P	Field mustard	cytosol	87.02	86.26
CDX92430	Canola	cytosol	79.94	84.95
CDY16571	Canola	cytosol	79.35	84.33
CDX88837	Canola	cytosol	80.24	83.95
CDX70947	Canola	cytosol	80.24	83.95
Os12t0143800-01	Rice	mitochondrion	52.21	51.45
Os11t0146800-01	Rice	nucleus	51.92	51.16
Os02t0562100-00	Rice	plastid	23.6	27.59
Os01t0578000-01	Rice	cytosol	26.55	25.79
Os05t0121700-02	Rice	cytosol, mitochondrion, nucleus, plastid	24.48	22.86

Protein Annotations

Gene3D:1.10.150.20	MapMan:14.3.2.4	Gene3D:3.40.50.300	EntrezGene:4350923	InterPro:AAA+_ATPase	ProteinID:ABA94698.1
ProteinID:BAB85490.1	ProteinID:BAF28642.1	ProteinID:BAT14863.1	InterPro:DNA_recomb/repair_Rad51	InterPro:DNA_recomb/repair_Rad51_C	InterPro:DNA_recomb/repair_RecA-like
InterPro:DNA_repair_Rad51/TF_NusA_a-hlx	ProteinID:EEE52465.1	GO:GO:0000003	GO:GO:0000150	GO:GO:0000166	GO:GO:0000400
GO:GO:0000724	GO:GO:0000730	GO:GO:0000794	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003690	GO:GO:0003697	GO:GO:0003824	GO:GO:0004518	GO:GO:0004520	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006310	GO:GO:0006312	GO:GO:0006950
GO:GO:0006974	GO:GO:0007049	GO:GO:0007131	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009628	GO:GO:0009987	GO:GO:0010212	GO:GO:0016043	GO:GO:0016787
GO:GO:0042148	GO:GO:0070192	GO:GO:1990426	InterPro:IPR020587	InterPro:IPR020588	EnsemblPlantsGene:Os11g0615800
EnsemblPlants:Os11t0615800-01	InterPro:P-loop_NTPase	PFAM:PF08423	PIRSF:PIRSF005856	PFscan:PS50162	PFscan:PS50163
PANTHER:PTHR22942	PANTHER:PTHR22942:SF45	UniProt:Q8SBB9	InterPro:Rad51_DMC1_RadA	InterPro:RecA_ATP-bd	InterPro:RecA_monomer-monomer_interface
SMART:SM00382	SUPFAM:SSF47794	SUPFAM:SSF52540	TIGRFAMs:TIGR02239	UniParc:UPI000009E695	RefSeq:XP_015617774.1
SEG:seg	:	:	:	:	:

Description

DNA REPAIR PROTEIN RAD51ADNA repair protein RAD51, Homologous pairing (Os11t0615800-01)

Coordinates

chr11:+:23942684..23946580

Molecular Weight (calculated)

36492.8 Da

IEP (calculated)

5.715

GRAVY (calculated)

-0.101

Length

339 amino acids

Sequence
(BLAST)

001: MSTSAAASAA AEQQQEEGEH GPFPIEQLQA SGIAALDVKK LKDSGLYTVE SVAYTPRKDL LQIKGISEAK VDKIVEAASK LVPLGFTSAS QLHAQRLEII
101: QVTTGSRELD KILDGGIETG SITEIYGEFR SGKTQLCHTL CVTCQLPLDQ GGGEGKALYI DAEGTFRPQR LLQIADRFGL NGADVLENVA YARAYNTDHQ
201: SRLLLEAASM MIETRFALMI VDSATALYRT DFSGRGELSA RQMHMAKFLR SLQKLADEFG VAVVITNQVV AQVDGSAMFA GPQIKPIGGN IMAHASTTRL
301: ALRKGRGEER ICKVISSPCL AEAEARFQIA SEGVADVKD

Best Arabidopsis Sequence Match ( AT5G20850.1 )
(BLAST)

001: MTTMEQRRNQ NAVQQQDDEE TQHGPFPVEQ LQAAGIASVD VKKLRDAGLC TVEGVAYTPR KDLLQIKGIS DAKVDKIVEA ASKLVPLGFT SASQLHAQRQ
101: EIIQITSGSR ELDKVLEGGI ETGSITELYG EFRSGKTQLC HTLCVTCQLP MDQGGGEGKA MYIDAEGTFR PQRLLQIADR FGLNGADVLE NVAYARAYNT
201: DHQSRLLLEA ASMMIETRFA LLIVDSATAL YRTDFSGRGE LSARQMHLAK FLRSLQKLAD EFGVAVVITN QVVAQVDGSA LFAGPQFKPI GGNIMAHATT
301: TRLALRKGRA EERICKVISS PCLPEAEARF QISTEGVTDC KD

Arabidopsis Description

RAD51DNA repair protein RAD51 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:P94102]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.