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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 4
  • cytosol 2
  • mitochondrion 1
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_11s0016g00340.t01 Wine grape cytosol 91.52 92.88
GSMUA_Achr8P16810_001 Banana cytosol 88.01 90.66
Bra006580.1-P Field mustard cytosol 89.47 89.47
Os12t0497300-01 Rice cytosol 88.89 89.15
Zm00001d041757_P001 Maize cytosol 88.6 89.12
AT5G20850.1 Thale cress cytosol 88.89 88.89
KRH19405 Soybean cytosol 89.18 88.66
KRH02540 Soybean cytosol 88.89 88.63
CDX70947 Canola cytosol 83.92 88.58
CDX88837 Canola cytosol 83.92 88.58
Os11t0615800-01 Rice cytosol 87.72 88.5
CDX92430 Canola cytosol 82.46 88.4
Bra002334.1-P Field mustard cytosol 88.3 88.3
TraesCS7D01G381300.1 Wheat cytosol 88.3 88.3
CDY16571 Canola cytosol 81.87 87.77
TraesCS7A01G384800.1 Wheat cytosol 88.01 87.76
Zm00001d021898_P001 Maize cytosol 87.13 87.65
TraesCS7B01G287700.1 Wheat cytosol 87.72 87.46
EER99597 Sorghum cytosol 87.43 86.92
OQU79150 Sorghum cytosol 88.6 86.08
OQU83843 Sorghum cytosol 87.72 85.96
HORVU7Hr1G091450.2 Barley cytosol, nucleus 87.43 81.03
Solyc09g082790.2.1 Tomato nucleus 47.08 48.2
Solyc05g050950.2.1 Tomato plastid 9.94 27.64
Solyc05g050960.2.1 Tomato cytosol 16.67 26.76
Solyc07g055170.1.1 Tomato cytosol 21.64 25.96
Solyc11g072610.1.1 Tomato cytosol, golgi, plastid 23.1 21.29
Protein Annotations
Description
RAD51DNA repair protein RAD51 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q40134]
Coordinates
chr7:-:7490189..7493859
Molecular Weight (calculated)
37319.9 Da
IEP (calculated)
5.941
GRAVY (calculated)
-0.164
Length
342 amino acids
Sequence
(BLAST)
001: MEQQHRNQKS MQDQNDEIED VQHGPFPVEQ LQASGIAALD VKKLKDAGLC TVESVVYAPR KELLQIKGIS EAKVDKIIEA ASKLVPLGFT SASQLHAQRL
101: EIIQITSGSK ELDKILEGGI ETGSITEIYG EFRCGKTQLC HTLCVTCQLP LDQGGGEGKA MYIDAEGTFR PQRLLQIADR YGLNGPDVLE NVAYARAYNT
201: DHQSRLLLEA ASMMVETRFA LMIVDSATAL YRTDFSGRGE LSARQMHLAK FLRSLQKLAD EFGVAVVITN QVVAQVDGSA VFAGPQIKPI GGNIMAHAST
301: TRLALRKGRA EERICKVVSS PCLAEAEARF QISVEGVTDV KD
Best Arabidopsis Sequence Match ( AT5G20850.1 )
(BLAST)
001: MTTMEQRRNQ NAVQQQDDEE TQHGPFPVEQ LQAAGIASVD VKKLRDAGLC TVEGVAYTPR KDLLQIKGIS DAKVDKIVEA ASKLVPLGFT SASQLHAQRQ
101: EIIQITSGSR ELDKVLEGGI ETGSITELYG EFRSGKTQLC HTLCVTCQLP MDQGGGEGKA MYIDAEGTFR PQRLLQIADR FGLNGADVLE NVAYARAYNT
201: DHQSRLLLEA ASMMIETRFA LLIVDSATAL YRTDFSGRGE LSARQMHLAK FLRSLQKLAD EFGVAVVITN QVVAQVDGSA LFAGPQFKPI GGNIMAHATT
301: TRLALRKGRA EERICKVISS PCLPEAEARF QISTEGVTDC KD
Arabidopsis Description
RAD51DNA repair protein RAD51 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:P94102]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.