Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
VIT_11s0016g00340.t01 | Wine grape | cytosol | 91.52 | 92.88 |
GSMUA_Achr8P16810_001 | Banana | cytosol | 88.01 | 90.66 |
Bra006580.1-P | Field mustard | cytosol | 89.47 | 89.47 |
Os12t0497300-01 | Rice | cytosol | 88.89 | 89.15 |
Zm00001d041757_P001 | Maize | cytosol | 88.6 | 89.12 |
AT5G20850.1 | Thale cress | cytosol | 88.89 | 88.89 |
KRH19405 | Soybean | cytosol | 89.18 | 88.66 |
KRH02540 | Soybean | cytosol | 88.89 | 88.63 |
CDX70947 | Canola | cytosol | 83.92 | 88.58 |
CDX88837 | Canola | cytosol | 83.92 | 88.58 |
Os11t0615800-01 | Rice | cytosol | 87.72 | 88.5 |
CDX92430 | Canola | cytosol | 82.46 | 88.4 |
Bra002334.1-P | Field mustard | cytosol | 88.3 | 88.3 |
TraesCS7D01G381300.1 | Wheat | cytosol | 88.3 | 88.3 |
CDY16571 | Canola | cytosol | 81.87 | 87.77 |
TraesCS7A01G384800.1 | Wheat | cytosol | 88.01 | 87.76 |
Zm00001d021898_P001 | Maize | cytosol | 87.13 | 87.65 |
TraesCS7B01G287700.1 | Wheat | cytosol | 87.72 | 87.46 |
EER99597 | Sorghum | cytosol | 87.43 | 86.92 |
OQU79150 | Sorghum | cytosol | 88.6 | 86.08 |
OQU83843 | Sorghum | cytosol | 87.72 | 85.96 |
HORVU7Hr1G091450.2 | Barley | cytosol, nucleus | 87.43 | 81.03 |
Solyc09g082790.2.1 | Tomato | nucleus | 47.08 | 48.2 |
Solyc05g050950.2.1 | Tomato | plastid | 9.94 | 27.64 |
Solyc05g050960.2.1 | Tomato | cytosol | 16.67 | 26.76 |
Solyc07g055170.1.1 | Tomato | cytosol | 21.64 | 25.96 |
Solyc11g072610.1.1 | Tomato | cytosol, golgi, plastid | 23.1 | 21.29 |
Protein Annotations
Description
RAD51DNA repair protein RAD51 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q40134]
Coordinates
chr7:-:7490189..7493859
Molecular Weight (calculated)
37319.9 Da
IEP (calculated)
5.941
GRAVY (calculated)
-0.164
Length
342 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQQHRNQKS MQDQNDEIED VQHGPFPVEQ LQASGIAALD VKKLKDAGLC TVESVVYAPR KELLQIKGIS EAKVDKIIEA ASKLVPLGFT SASQLHAQRL
101: EIIQITSGSK ELDKILEGGI ETGSITEIYG EFRCGKTQLC HTLCVTCQLP LDQGGGEGKA MYIDAEGTFR PQRLLQIADR YGLNGPDVLE NVAYARAYNT
201: DHQSRLLLEA ASMMVETRFA LMIVDSATAL YRTDFSGRGE LSARQMHLAK FLRSLQKLAD EFGVAVVITN QVVAQVDGSA VFAGPQIKPI GGNIMAHAST
301: TRLALRKGRA EERICKVVSS PCLAEAEARF QISVEGVTDV KD
101: EIIQITSGSK ELDKILEGGI ETGSITEIYG EFRCGKTQLC HTLCVTCQLP LDQGGGEGKA MYIDAEGTFR PQRLLQIADR YGLNGPDVLE NVAYARAYNT
201: DHQSRLLLEA ASMMVETRFA LMIVDSATAL YRTDFSGRGE LSARQMHLAK FLRSLQKLAD EFGVAVVITN QVVAQVDGSA VFAGPQIKPI GGNIMAHAST
301: TRLALRKGRA EERICKVVSS PCLAEAEARF QISVEGVTDV KD
001: MTTMEQRRNQ NAVQQQDDEE TQHGPFPVEQ LQAAGIASVD VKKLRDAGLC TVEGVAYTPR KDLLQIKGIS DAKVDKIVEA ASKLVPLGFT SASQLHAQRQ
101: EIIQITSGSR ELDKVLEGGI ETGSITELYG EFRSGKTQLC HTLCVTCQLP MDQGGGEGKA MYIDAEGTFR PQRLLQIADR FGLNGADVLE NVAYARAYNT
201: DHQSRLLLEA ASMMIETRFA LLIVDSATAL YRTDFSGRGE LSARQMHLAK FLRSLQKLAD EFGVAVVITN QVVAQVDGSA LFAGPQFKPI GGNIMAHATT
301: TRLALRKGRA EERICKVISS PCLPEAEARF QISTEGVTDC KD
101: EIIQITSGSR ELDKVLEGGI ETGSITELYG EFRSGKTQLC HTLCVTCQLP MDQGGGEGKA MYIDAEGTFR PQRLLQIADR FGLNGADVLE NVAYARAYNT
201: DHQSRLLLEA ASMMIETRFA LLIVDSATAL YRTDFSGRGE LSARQMHLAK FLRSLQKLAD EFGVAVVITN QVVAQVDGSA LFAGPQFKPI GGNIMAHATT
301: TRLALRKGRA EERICKVISS PCLPEAEARF QISTEGVTDC KD
Arabidopsis Description
RAD51DNA repair protein RAD51 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:P94102]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.