Factsheet for Solyc06g084410.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g083670.2.1
Solyc02g083680.1.1
Solyc03g113720.2.1
Solyc05g006420.2.1
Solyc05g015610.2.1
Solyc07g017540.2.1
Solyc07g047770.2.1
Solyc07g056580.2.1
Solyc08g081960.1.1
Solyc09g082790.2.1
Solyc10g079600.1.1
Solyc10g079700.1.1
Solyc12g008680.1.1
Solyc12g011330.2.1
Solyc12g099720.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G29350.1	Solyc05g006420.2.1	AT1G10470.1	16965536
AT3G29350.1	Solyc03g113720.2.1	AT1G19050.1	16965536
AT3G29350.1	Solyc03g113720.2.1	AT1G19050.1	18642946
AT3G29350.1	Solyc03g113720.2.1	AT1G19050.1	21798944
AT3G29350.1	Solyc05g015610.2.1	AT1G27320.1	16965536
AT3G29350.1	Solyc07g056580.2.1	AT1G66340.1	10930573
AT3G29350.1	Solyc12g011330.2.1	AT1G66340.1	10930573
AT3G29350.1	Solyc02g083670.2.1	AT2G17820.1	10930573
AT3G29350.1	Solyc02g083680.1.1	AT2G17820.1	10930573
AT3G29350.1	Solyc10g079600.1.1	AT2G41310.1	16965536
AT3G29350.1	Solyc10g079700.1.1	AT2G41310.1	16965536
AT3G29350.1	Solyc12g099720.1.1	AT2G47430.1	10930573
AT3G29350.1	Solyc09g082790.2.1	AT3G22880.1	17937504
AT3G29350.1	Solyc03g113720.2.1	AT3G48100.1	16965536
AT3G29350.1	Solyc03g113720.2.1	AT3G48100.1	18642946
AT3G29350.1	Solyc10g079600.1.1	AT3G57040.1	10930573
AT3G29350.1	Solyc10g079700.1.1	AT3G57040.1	10930573
AT3G29350.1	Solyc10g079600.1.1	AT3G57040.1	16965536
AT3G29350.1	Solyc10g079700.1.1	AT3G57040.1	16965536
AT3G29350.1	Solyc10g079600.1.1	AT3G57040.1	18642946
AT3G29350.1	Solyc10g079700.1.1	AT3G57040.1	18642946
AT3G29350.1	Solyc08g081960.1.1	AT4G23750.1	21705390
AT3G29350.1	Solyc12g008680.1.1	AT4G29170.1	17937504
AT3G29350.1	Solyc07g017540.2.1	AT5G20850.1	17937504
AT3G29350.1	Solyc07g047770.2.1	AT5G35750.1	16965536
AT3G29350.1	Solyc07g047770.2.1	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400051833	Potato	cytosol	89.17	70.39
VIT_07s0104g00880.t01	Wine grape	cytosol, nucleus, plastid	67.5	53.64
KRH67127	Soybean	cytosol	39.17	53.41
Solyc01g080540.2.1	Tomato	cytosol, nucleus, plastid	62.5	49.67
GSMUA_Achr11P...	Banana	cytosol	61.67	49.01
Solyc03g116720.1.1	Tomato	cytosol	44.17	46.09
Solyc01g098400.2.1	Tomato	cytosol, nucleus, plastid	56.67	45.95
KRG95451	Soybean	cytosol	48.33	44.27
Bra033398.1-P	Field mustard	cytosol	57.5	44.23
KRH71497	Soybean	cytosol, mitochondrion, nucleus	55.83	44.08
KRH31957	Soybean	cytosol	55.83	44.08
AT1G03430.2	Thale cress	cytosol	57.5	43.95
CDX74472	Canola	cytosol	56.67	43.87
CDY37867	Canola	cytosol	56.67	43.87
AT3G29350.1	Thale cress	cytosol	55.0	42.31
CDY19992	Canola	cytosol	54.17	41.67
CDY00096	Canola	cytosol	54.17	41.67
CDX86370	Canola	cytosol	54.17	41.67
CDX85268	Canola	cytosol	54.17	41.67
Bra036215.1-P	Field mustard	cytosol	54.17	41.67
Bra025394.1-P	Field mustard	cytosol	54.17	41.67
GSMUA_Achr7P14570_001	Banana	cytosol	50.83	40.13
CDX89890	Canola	cytosol	56.67	40.0
Solyc08g066350.1.1	Tomato	cytosol, mitochondrion, nucleus	43.33	38.24
Solyc11g070150.1.1	Tomato	nucleus	42.5	37.23
GSMUA_Achr7P14620_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	46.67	36.84
GSMUA_AchrUn_...	Banana	cytosol	46.67	36.84
Bra028236.1-P	Field mustard	cytosol	54.17	36.52
AT5G39340.2	Thale cress	extracellular, plasma membrane	55.83	32.84
AT4G04402.1	Thale cress	extracellular	31.67	22.75
CDY71948	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.20.120.160	MapMan:11.4.2.2	GO:GO:0000160	GO:GO:0003674	GO:GO:0003824	GO:GO:0004871
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009719	GO:GO:0009736	GO:GO:0009927	GO:GO:0009987	GO:GO:0016301
GO:GO:0016310	GO:GO:0016740	GO:GO:0019538	GO:GO:0043424	InterPro:HPT_dom_sf	InterPro:IPR008207
InterPro:IPR036641	UniProt:K4CAU6	PFAM:PF01627	PFscan:PS50894	PANTHER:PTHR28242	PANTHER:PTHR28242:SF24
SUPFAM:SSF47226	InterPro:Sig_transdc_His_kin_Hpt_dom	EnsemblPlantsGene:Solyc06g084410.2	EnsemblPlants:Solyc06g084410.2.1	UniParc:UPI000276B9C7	SEG:seg

Description

No Description!

Coordinates

chr6:+:49533750..49537401

Molecular Weight (calculated)

13771.4 Da

IEP (calculated)

5.125

GRAVY (calculated)

-0.177

Length

120 amino acids

Sequence
(BLAST)

001: MEIVAKLQKQ FMDFISALYR ERFLDDQFLQ LQNLQDESNP DFVREVVSLF FVDSENLINN LTAALQQQVV DFKQVDSHVH QFKGSSSSIG AQRVKNACVA
101: FKTFCEGKNI EGWVCNVCSR

Best Arabidopsis Sequence Match ( AT3G21510.1 )
(BLAST)

001: MDLVQKQKSL QDYTKSLFLE GILDSQFLQL QQLQDESNPD FVSQVVTLFF QDSDRILNDL SLSLDQQVVD FKKVDPHVHQ LKGSSSSIGA QRVKNACVVF
101: RSFCEQQNVE ACHRCLQQVK QEYYLVKNRL ETLFKLEQQI VASGGMIPAV ELGF

Arabidopsis Description

AHP1AHP1 [Source:UniProtKB/TrEMBL;Acc:A0A178V856]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.