Factsheet for Solyc08g081960.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g080540.2.1
Solyc03g113720.2.1
Solyc06g084410.2.1
Solyc07g005140.2.1
Solyc08g081960.1.1
Solyc12g010330.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11140.1	Solyc07g005140.2.1	AT2G25180.1	21705390
AT4G11140.1	Solyc12g010330.1.1	AT2G25180.1	21705390
AT4G11140.1	Solyc01g080540.2.1	AT3G21510.1	21705390
AT4G11140.1	Solyc06g084410.2.1	AT3G29350.1	21705390
AT4G11140.1	Solyc08g081960.1.1	AT4G11140.1	21705390
AT4G11140.1	Solyc08g081960.1.1	AT4G23750.1	21705390
AT4G23750.1	Solyc03g113720.2.1	AT1G19050.1	21705390
AT4G23750.1	Solyc01g080540.2.1	AT3G21510.1	21705390
AT4G23750.1	Solyc08g081960.1.1	AT4G11140.1	21705390
AT4G23750.1	Solyc08g081960.1.1	AT4G23750.1	21705390

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400032058	Potato	nucleus	94.4	94.67
KRH27859	Soybean	nucleus	41.3	48.44
KRH77624	Soybean	nucleus	40.12	45.64
KRG92510	Soybean	nucleus	25.07	44.04
KRH41287	Soybean	nucleus	38.05	44.03
CDY10965	Canola	nucleus	36.58	41.89
Bra019270.1-P	Field mustard	nucleus	37.17	40.65
CDX94215	Canola	nucleus	37.17	40.13
KRH60010	Soybean	nucleus	39.23	39.82
AT4G11140.1	Thale cress	nucleus	33.33	39.37
Bra013730.1-P	Field mustard	nucleus	35.99	38.73
CDY47623	Canola	nucleus	35.99	38.73
AT4G23750.1	Thale cress	nucleus	38.64	38.19
Solyc06g051840.1.1	Tomato	nucleus	39.23	38.0
CDY03521	Canola	nucleus	35.99	37.89
Solyc06g082590.1.1	Tomato	nucleus	27.43	37.5
CDX90774	Canola	nucleus	29.5	36.1
Bra000736.1-P	Field mustard	nucleus	28.91	35.9
CDY05133	Canola	nucleus	29.2	35.74
Solyc01g014720.1.1	Tomato	nucleus	17.7	34.48
Solyc03g007460.1.1	Tomato	nucleus	39.23	33.59
Solyc01g095500.2.1	Tomato	nucleus	28.91	33.45
Solyc01g008880.1.1	Tomato	nucleus	17.4	29.65
Solyc05g009450.1.1	Tomato	nucleus	21.83	21.7
Solyc04g007180.1.1	Tomato	nucleus	20.65	20.9
Solyc01g008890.2.1	Tomato	nucleus	17.11	19.14
Solyc03g119580.1.1	Tomato	nucleus	18.58	16.36

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:K4CPJ2
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF42	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:Solyc08g081960.1	EnsemblPlants:Solyc08g081960.1.1	UniParc:UPI000276C4AE	SEG:seg	:

Description

No Description!

Coordinates

chr8:+:64879738..64880757

Molecular Weight (calculated)

37708.6 Da

IEP (calculated)

5.032

GRAVY (calculated)

-0.643

Length

339 amino acids

Sequence
(BLAST)

001: MDQQTMLSSG VKYTEHRKQI TMVRPAPPVT FNGRRRSSEM NAAGPRVVRI TVTDADATDS SSDEGEQGFY GRQRVRKFVN EVRIEQSSHC NGSVNGVLRN
101: GSSSETAPVV AAAPKRRKKT AGATTAASKL KVNHVKKFRG VRQRPWGKWA AEIRDPLRRV RLWLGTYDTA EEAAMVYDHA AIQLRGPDAL TNFATPPATK
201: ISCSSYNSGE ESHNDQRSPK SVLRCASTSF DESQNNEEAE AESLPILPSD IRDKNDISMS ENFCDLPPFE SFFPDDLFQF ENPITISDLF FEPDTLPDYN
301: NMLFGSSTTD YGFGSSSWPE EDFFQDFGDV FGSDPLVAL

Best Arabidopsis Sequence Match ( AT4G23750.1 )
(BLAST)

001: MEAEKKMVLP RIKFTEHKTN TTTIVSELTN THQTRILRIS VTDPDATDSS SDDEEEEHQR FVSKRRRVKK FVNEVYLDSG AVVTGSCGQM ESKKRQKRAV
101: KSESTVSPVV SATTTTTGEK KFRGVRQRPW GKWAAEIRDP LKRVRLWLGT YNTAEEAAMV YDNAAIQLRG PDALTNFSVT PTTATEKKAP PPSPVKKKKK
201: KNNKSKKSVT ASSSISRSSS NDCLCSPVSV LRSPFAVDEF SGISSSPVAA VVVKEEPSMT TVSETFSDFS APLFSDDDVF DFRSSVVPDY LGGDLFGEDL
301: FTADMCTDMN FGFDFGSGLS SWHMEDHFQD IGDLFGSDPL LAV

Arabidopsis Description

CRF2Ethylene-responsive transcription factor CRF2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUQ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.