Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000736.1-P | Field mustard | nucleus | 95.31 | 96.7 |
| CDX90774 | Canola | nucleus | 96.39 | 96.39 |
| AT4G11140.1 | Thale cress | nucleus | 67.15 | 64.81 |
| CDY10965 | Canola | nucleus | 53.43 | 50.0 |
| CDX94215 | Canola | nucleus | 54.15 | 47.77 |
| CDY47623 | Canola | nucleus | 53.07 | 46.67 |
| CDY03521 | Canola | nucleus | 53.07 | 45.65 |
| CDY12500 | Canola | nucleus | 19.86 | 35.48 |
| CDY70837 | Canola | nucleus | 18.77 | 35.37 |
| CDY09516 | Canola | nucleus | 20.58 | 34.76 |
| CDY66105 | Canola | nucleus | 20.94 | 34.73 |
| CDX68325 | Canola | nucleus | 20.58 | 34.55 |
| CDY49223 | Canola | nucleus | 20.58 | 34.55 |
| CDY41468 | Canola | nucleus | 19.13 | 33.54 |
| CDX91694 | Canola | nucleus | 19.13 | 32.92 |
| KRH41287 | Soybean | nucleus | 34.3 | 32.42 |
| KRG92510 | Soybean | nucleus | 22.38 | 32.12 |
| KRH27859 | Soybean | nucleus | 32.85 | 31.49 |
| KRH77624 | Soybean | nucleus | 33.57 | 31.21 |
| PGSC0003DMT400032058 | Potato | nucleus | 36.46 | 29.88 |
| Solyc08g081960.1.1 | Tomato | nucleus | 35.74 | 29.2 |
| CDY47066 | Canola | nucleus | 34.66 | 28.07 |
| CDY54340 | Canola | nucleus | 33.94 | 27.89 |
| KRH60010 | Soybean | nucleus | 33.57 | 27.84 |
| CDY49175 | Canola | nucleus | 34.66 | 27.35 |
| CDY61587 | Canola | nucleus | 35.74 | 27.35 |
| CDX96208 | Canola | nucleus | 34.3 | 27.22 |
| CDY11369 | Canola | nucleus | 27.08 | 26.5 |
| CDX71724 | Canola | nucleus | 27.08 | 26.04 |
| CDX80006 | Canola | nucleus | 24.91 | 25.65 |
| CDY71170 | Canola | nucleus | 30.69 | 25.22 |
| CDY52005 | Canola | nucleus | 25.99 | 25.09 |
| CDY53906 | Canola | nucleus | 25.63 | 25.0 |
| CDY71485 | Canola | nucleus | 30.32 | 24.93 |
| CDY42030 | Canola | nucleus | 24.55 | 24.91 |
| CDX92852 | Canola | nucleus | 28.16 | 24.07 |
| CDY29870 | Canola | nucleus | 27.44 | 23.38 |
| CDX97406 | Canola | nucleus | 27.08 | 22.87 |
| CDX95687 | Canola | nucleus | 20.94 | 22.83 |
| CDY14263 | Canola | nucleus | 26.71 | 22.56 |
| CDX84990 | Canola | nucleus | 18.77 | 20.97 |
| CDY07380 | Canola | nucleus | 21.66 | 19.05 |
| CDY04234 | Canola | nucleus | 21.66 | 18.93 |
| CDY65135 | Canola | nucleus | 20.58 | 18.21 |
| CDY44887 | Canola | nucleus | 20.58 | 18.04 |
| CDY38591 | Canola | nucleus | 19.13 | 17.61 |
| CDX96010 | Canola | nucleus | 18.77 | 17.11 |
| CDY42104 | Canola | nucleus | 10.83 | 16.76 |
| CDX83568 | Canola | nucleus | 18.05 | 15.97 |
| CDY40978 | Canola | nucleus | 14.44 | 15.81 |
| CDY13596 | Canola | nucleus | 18.05 | 15.77 |
| CDX99741 | Canola | nucleus | 17.33 | 15.24 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | GO:A0A078EZN1 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | EnsemblPlants:CDY05133 |
| ProteinID:CDY05133 | ProteinID:CDY05133.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00119925001 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 |
| PFscan:PS51032 | PANTHER:PTHR31194 | PANTHER:PTHR31194:SF14 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI0004EE8058 |
| SEG:seg | : | : | : | : | : |
Description
BnaC03g29310D
Coordinates
chrLK031959:-:975468..976373
Molecular Weight (calculated)
30240.1 Da
IEP (calculated)
4.860
GRAVY (calculated)
-0.549
Length
277 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAEKNVAKL SQHNIMTATT VTQPRILRIS VSDPYATDSS SDEENDFADI SRKRRRVKKF INEVVLESTV SDKDRPKKKK RPNTKTTAST AVTAPARKYR
101: GVRQRPWGKW AAEIRDPSRR LRGPNALTNF SPPPPPPATE NGEEASKEMD GVSDITTSGG GECLGSPVSV LQTPFSGEST AAIAVKEEFS GVSTTAVEVK
201: EEPSLTVSDT FTDFSSPLFL HDDVFGFPTT MPDCFGDEFF ADMSFGFGSG SGFSSWHVED HFQDIGDLFG SDPLLTV
101: GVRQRPWGKW AAEIRDPSRR LRGPNALTNF SPPPPPPATE NGEEASKEMD GVSDITTSGG GECLGSPVSV LQTPFSGEST AAIAVKEEFS GVSTTAVEVK
201: EEPSLTVSDT FTDFSSPLFL HDDVFGFPTT MPDCFGDEFF ADMSFGFGSG SGFSSWHVED HFQDIGDLFG SDPLLTV
001: METEKKVSLP RILRISVTDP YATDSSSDEE EEVDFDALST KRRRVKKYVK EVVLDSVVSD KEKPMKKKRK KRVVTVPVVV TTATRKFRGV RQRPWGKWAA
101: EIRDPSRRVR VWLGTFDTAE EAAIVYDNAA IQLRGPNAEL NFPPPPVTEN VEEASTEVKG VSDFIIGGGE CLRSPVSVLE SPFSGESTAV KEEFVGVSTA
201: EIVVKKEPSF NGSDFSAPLF SDDDVFGFST SMSESFGGDL FGDNLFADMS FGSGFGFGSG SGFSSWHVED HFQDIGDLFG SDPVLTV
101: EIRDPSRRVR VWLGTFDTAE EAAIVYDNAA IQLRGPNAEL NFPPPPVTEN VEEASTEVKG VSDFIIGGGE CLRSPVSVLE SPFSGESTAV KEEFVGVSTA
201: EIVVKKEPSF NGSDFSAPLF SDDDVFGFST SMSESFGGDL FGDNLFADMS FGSGFGFGSG SGFSSWHVED HFQDIGDLFG SDPVLTV
Arabidopsis Description
CRF1Ethylene-responsive transcription factor CRF1 [Source:UniProtKB/Swiss-Prot;Acc:O82503]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.