CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68325
CDX71724
CDX80006
CDX85268
CDX86370
CDX90774
CDX91694
CDX94215
CDX95687
CDX96208
CDY00096
CDY03521
CDY05133
CDY09516
CDY10965
CDY11369
CDY12500
CDY19286
CDY19992
CDY37282
CDY41468
CDY42030
CDY47066
CDY47623
CDY49175
CDY49223
CDY52005
CDY53906
CDY54340
CDY61587
CDY66105
CDY70837

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46310.1	CDX91694	AT1G22985.1	21705390
AT2G46310.1	CDY12500	AT1G22985.1	21705390
AT2G46310.1	CDY41468	AT1G22985.1	21705390
AT2G46310.1	CDY70837	AT1G22985.1	21705390
AT2G46310.1	CDX68325	AT1G71130.1	21705390
AT2G46310.1	CDY09516	AT1G71130.1	21705390
AT2G46310.1	CDY49223	AT1G71130.1	21705390
AT2G46310.1	CDY66105	AT1G71130.1	21705390
AT2G46310.1	CDX80006	AT2G46310.1	21705390
AT2G46310.1	CDX95687	AT2G46310.1	21705390
AT2G46310.1	CDY42030	AT2G46310.1	21705390
AT2G46310.1	CDY19286	AT3G21510.1	21705390
AT2G46310.1	CDY37282	AT3G21510.1	21705390
AT2G46310.1	CDX85268	AT3G29350.1	21705390
AT2G46310.1	CDX86370	AT3G29350.1	21705390
AT2G46310.1	CDY00096	AT3G29350.1	21705390
AT2G46310.1	CDY19992	AT3G29350.1	21705390
AT2G46310.1	CDX71724	AT3G61630.1	21705390
AT2G46310.1	CDY11369	AT3G61630.1	21705390
AT2G46310.1	CDY52005	AT3G61630.1	21705390
AT2G46310.1	CDY53906	AT3G61630.1	21705390
AT2G46310.1	CDX90774	AT4G11140.1	21705390
AT2G46310.1	CDY05133	AT4G11140.1	21705390
AT2G46310.1	CDX94215	AT4G23750.1	21705390
AT2G46310.1	CDY03521	AT4G23750.1	21705390
AT2G46310.1	CDY10965	AT4G23750.1	21705390
AT2G46310.1	CDY47623	AT4G23750.1	21705390
AT2G46310.1	CDX96208	AT5G53290.1	21705390
AT2G46310.1	CDY47066	AT5G53290.1	21705390
AT2G46310.1	CDY49175	AT5G53290.1	21705390
AT2G46310.1	CDY54340	AT5G53290.1	21705390
AT2G46310.1	CDY61587	AT5G53290.1	21705390

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004548.1-P	Field mustard	nucleus	100.0	100.0
CDY42030	Canola	nucleus	91.08	89.74
AT2G46310.1	Thale cress	nucleus	65.06	59.52
CDX95687	Canola	nucleus	54.28	57.48
CDY11369	Canola	nucleus	51.67	49.12
CDX71724	Canola	nucleus	52.04	48.61
CDY53906	Canola	nucleus	49.81	47.18
CDY52005	Canola	nucleus	49.81	46.69
CDY70837	Canola	nucleus	22.3	40.82
CDY09516	Canola	nucleus	24.16	39.63
CDY66105	Canola	nucleus	24.54	39.52
CDY12500	Canola	nucleus	22.3	38.71
CDY49223	Canola	nucleus	23.42	38.18
CDX68325	Canola	nucleus	23.42	38.18
CDY41468	Canola	nucleus	22.3	37.97
CDX91694	Canola	nucleus	22.3	37.27
VIT_15s0046g01390.t01	Wine grape	nucleus	37.17	31.85
CDY10965	Canola	nucleus	33.46	30.41
CDX94215	Canola	nucleus	32.71	28.03
CDX92852	Canola	nucleus	33.09	27.47
CDY03521	Canola	nucleus	32.71	27.33
CDY14263	Canola	nucleus	32.71	26.83
CDY29870	Canola	nucleus	32.34	26.77
CDY71170	Canola	nucleus	33.46	26.71
CDY47623	Canola	nucleus	31.23	26.67
CDX97406	Canola	nucleus	32.34	26.52
CDY49175	Canola	nucleus	34.2	26.21
CDY71485	Canola	nucleus	32.71	26.11
CDX96208	Canola	nucleus	33.83	26.07
CDY61587	Canola	nucleus	34.2	25.41
CDY54340	Canola	nucleus	31.6	25.22
CDY47066	Canola	nucleus	31.97	25.15
CDY05133	Canola	nucleus	25.65	24.91
CDX90774	Canola	nucleus	25.28	24.55
CDX84990	Canola	nucleus	20.45	22.18
CDY42104	Canola	nucleus	14.13	21.23
CDY38591	Canola	nucleus	23.05	20.6
CDY65135	Canola	nucleus	23.42	20.13
CDY44887	Canola	nucleus	23.42	19.94
CDX96010	Canola	nucleus	22.3	19.74
CDY07380	Canola	nucleus	22.68	19.37
CDY04234	Canola	nucleus	22.68	19.24
CDY40978	Canola	nucleus	16.36	17.39
CDX83568	Canola	nucleus	18.96	16.29
CDY13596	Canola	nucleus	18.59	15.77
CDX99741	Canola	nucleus	17.47	14.92

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	GO:A0A078CS66	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlants:CDX80006
ProteinID:CDX80006	ProteinID:CDX80006.1	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00132880001	InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF43	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI00025474B2	SEG:seg	:	:	:	:

Description

BnaA05g01500D

Coordinates

chrLK031819:+:1284561..1285540

Molecular Weight (calculated)

29994.4 Da

IEP (calculated)

7.874

GRAVY (calculated)

-0.468

Length

269 amino acids

Sequence
(BLAST)

001: MKSRERNVKY TVHRKLTSLS PKVVKITVTD PCATDSSSDE ENDDRFVSPA KRVKRYVEVI RFCDAAKRKK PTNKAAEPVK YRGVRRRPWG KYAAEIRDPS
101: KRARVWLGTF DTAEEAAIGY DKAAIRIKGR HALTNILTPP SSPPAIDLET VSRCDDSAVE ESQSSSIMRS PTSVLRFSAG PINLSSAHQE APAGLASPDP
201: FFLPPELFPA RDCFWDSEIA PDPLFLDEFQ LLPNSSTVSK LSESFPLGVI GDLSSCSWDV DEFFKDHLF

Best Arabidopsis Sequence Match ( AT2G46310.1 )
(BLAST)

001: MKSRVRKSKY TVHRKITSTP FDGFPKIVKI IVTDPCATDS SSDEENDNKS VAPRVKRYVD EIRFCDEDDE PKPARKAKKK SPAAAAENGG DLVKSVVKYR
101: GVRQRPWGKF AAEIRDPSSR TRLWLGTFAT AEEAAIGYDR AAIRIKGHNA QTNFLTPPPS PTTEVLPETP VIDLETVSGC DSARESQISL CSPTSVLRFS
201: HNDETEYRTE PTEEQNPFFL PDLFRSGDYF WDSEITPDPL FLDEFHQSLL PNINNNNTVC DKDTNLSDSF PLGVIGDFSS WDVDEFFQDH LLDK

Arabidopsis Description

CRF5Ethylene-responsive transcription factor CRF5 [Source:UniProtKB/Swiss-Prot;Acc:O82339]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.