Factsheet for VIT_15s0046g01390.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g02210.t01
VIT_07s0104g00880.t01
VIT_15s0046g01390.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46310.1	VIT_15s0046g01390.t01	AT2G46310.1	21705390
AT2G46310.1	VIT_05s0020g02210.t01	AT3G21510.1	21705390
AT2G46310.1	VIT_07s0104g00880.t01	AT3G29350.1	21705390
AT2G46310.1	VIT_15s0046g01390.t01	AT3G61630.1	21705390
AT3G61630.1	VIT_15s0046g01390.t01	AT2G46310.1	21705390
AT3G61630.1	VIT_05s0020g02210.t01	AT3G21510.1	21705390
AT3G61630.1	VIT_07s0104g00880.t01	AT3G29350.1	21705390
AT3G61630.1	VIT_15s0046g01390.t01	AT3G61630.1	21705390

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0050g02400.t01	Wine grape	nucleus	42.68	39.3
Bra004548.1-P	Field mustard	nucleus	31.85	37.17
CDX80006	Canola	nucleus	31.85	37.17
CDY42030	Canola	nucleus	32.17	37.0
CDY11369	Canola	nucleus	32.8	36.4
CDY52005	Canola	nucleus	33.12	36.24
CDX71724	Canola	nucleus	33.12	36.11
Bra003462.1-P	Field mustard	nucleus	32.48	36.04
CDY53906	Canola	nucleus	32.48	35.92
CDX95687	Canola	nucleus	28.66	35.43
AT2G46310.1	Thale cress	nucleus	33.12	35.37
VIT_06s0004g08190.t01	Wine grape	nucleus	30.57	33.68
AT3G61630.1	Thale cress	nucleus	33.44	33.33
VIT_01s0011g03470.t01	Wine grape	nucleus	19.75	19.38

Protein Annotations

EntrezGene:100255049	wikigene:100255049	MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
ProteinID:CCB62496	ProteinID:CCB62496.1	InterPro:DNA-bd_dom_sf	UniProt:F6I6A0	EMBL:FN596755	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	EntrezGene:LOC100255049
wikigene:LOC100255049	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF43
SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI00015CB119	ArrayExpress:VIT_15s0046g01390	EnsemblPlantsGene:VIT_15s0046g01390	EnsemblPlants:VIT_15s0046g01390.t01
RefSeq:XP_002276577	RefSeq:XP_002276577.1	RefSeq:XP_010661878.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr15:-:18381982..18382926

Molecular Weight (calculated)

35587.6 Da

IEP (calculated)

4.796

GRAVY (calculated)

-0.697

Length

314 amino acids

Sequence
(BLAST)

001: MDGKSTASTP VKYTEHRSVT SKVVKVPLGK EKRCSNGGTR RVIRISVTDA DATDSDEEEE EYCRVRVKKH VNEIRVVEAT RAERMKCREA EKVSNRSQVS
101: GGKKFRGVRQ RPWGRWAAEI RDPSRRGRLW LGTYDTAEEA AMVYDDAAIR IRGPDALTNF AKPPPKTIPP EINPSVSGYD SGRDSRSVCS PTSVLRFQSS
201: EEPQSQSQSQ PESDWRPLWE VKEEATFAHD FCLIDSNSHL ETEWRPVEQV MEMLNECFVN EFQTPAPICF EEMNIPDMIL AESIGGDISV RLDEDIGSCT
301: WDVDAYYEDS ILLL

Best Arabidopsis Sequence Match ( AT4G27950.1 )
(BLAST)

001: MMMDEFMDLR PVKYTEHKTV IRKYTKKSSM ERKTSVRDSA RLVRVSMTDR DATDSSSDEE EFLFPRRRVK RLINEIRVEP SSSSTGDVSA SPTKDRKRIN
101: VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
201: MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
301: LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV

Arabidopsis Description

CRF4Ethylene-responsive transcription factor CRF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.