Factsheet for VIT_16s0050g02400.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64510	Soybean	nucleus, plastid	46.63	49.07
Solyc06g051840.1.1	Tomato	nucleus	49.27	48.0
PGSC0003DMT400086922	Potato	mitochondrion, nucleus	53.08	46.53
KRH53432	Soybean	nucleus	48.09	46.46
PGSC0003DMT400006041	Potato	nucleus	49.27	44.92
Solyc03g007460.1.1	Tomato	nucleus	50.15	43.18
VIT_15s0046g01390.t01	Wine grape	nucleus	39.3	42.68
KRH15980	Soybean	nucleus	40.18	41.9
KRH18134	Soybean	nucleus	39.59	40.3
VIT_06s0004g08190.t01	Wine grape	nucleus	28.74	34.39
VIT_01s0011g03470.t01	Wine grape	nucleus	21.7	23.12

Protein Annotations

EntrezGene:100248494	wikigene:100248494	MapMan:15.5.7.1	Gene3D:3.30.730.10	UniProt:A5B445	EMBL:AM445956
InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	ProteinID:CAN74147	ProteinID:CAN74147.1	ProteinID:CCB47766	ProteinID:CCB47766.1
InterPro:DNA-bd_dom_sf	EMBL:FN595243	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	EntrezGene:LOC100248494	wikigene:LOC100248494	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF40	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0001520191
ArrayExpress:VIT_16s0050g02400	EnsemblPlantsGene:VIT_16s0050g02400	EnsemblPlants:VIT_16s0050g02400.t01	RefSeq:XP_002267400	RefSeq:XP_002267400.1	SEG:seg

Description

No Description!

Coordinates

chr16:-:19332709..19333734

Molecular Weight (calculated)

38187.1 Da

IEP (calculated)

4.553

GRAVY (calculated)

-0.764

Length

341 amino acids

Sequence
(BLAST)

001: MDQSLLYPIK YTEHRSITNK QTRQSRRPPE QNSGVPRVVR ISVTDPDATD SSSDEEDELF SRQRVKRYTN EINIATVSKS IAPVAGRKRG AGAGEMAPCR
101: RPMKVAAPTN GRKFRGVRQR PWGKWAAEIR DPARRVRLWL GTYDTAEEAA MVYDNAAIKL RGPDALTNFV TPPPPPKPEI NLTAVSGYES GDESRNLSSP
201: TSVLHFRTHS SSTDEAEPSN RSDPVHETES SEPVQNPETH QQQPVQPVRE ECQGETTNTG DSSVDYLPMD LPFINDMFNF EAPGSIFEDT SILPESILNE
301: DFSDMFLDSP INFDISSSWR LEDDYFQDIG DLFTSDSLSV L

Best Arabidopsis Sequence Match ( AT4G27950.1 )
(BLAST)

001: MMMDEFMDLR PVKYTEHKTV IRKYTKKSSM ERKTSVRDSA RLVRVSMTDR DATDSSSDEE EFLFPRRRVK RLINEIRVEP SSSSTGDVSA SPTKDRKRIN
101: VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
201: MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
301: LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV

Arabidopsis Description

CRF4Ethylene-responsive transcription factor CRF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.