CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64510	Soybean	nucleus, plastid	81.87	89.2
KRH63038	Soybean	nucleus	17.85	51.64
VIT_16s0050g02400.t01	Wine grape	nucleus	46.46	48.09
KRG92510	Soybean	nucleus	26.06	47.67
KRH15980	Soybean	nucleus	41.93	45.26
KRH41287	Soybean	nucleus	37.39	45.05
KRH27859	Soybean	nucleus	36.54	44.64
KRH18134	Soybean	nucleus	41.64	43.88
KRH77624	Soybean	nucleus	36.54	43.29
Solyc06g051840.1.1	Tomato	nucleus	42.49	42.86
PGSC0003DMT400006041	Potato	nucleus	43.06	40.64
KRH60010	Soybean	nucleus	38.24	40.42
PGSC0003DMT400086922	Potato	mitochondrion, nucleus	42.78	38.82
Solyc03g007460.1.1	Tomato	nucleus	41.36	36.87
KRH07295	Soybean	nucleus	28.33	36.5
KRH66264	Soybean	nucleus	27.2	33.92
KRH68876	Soybean	nucleus	28.61	33.55
KRG97126	Soybean	nucleus	27.48	33.11
KRH72836	Soybean	nucleus	25.21	32.84
KRH17205	Soybean	nucleus	24.93	31.21
KRH41626	Soybean	nucleus	14.45	30.91
KRH30664	Soybean	nucleus	22.66	29.41
KRH39204	Soybean	nucleus	11.9	24.85
KRG98122	Soybean	nucleus	15.58	23.81
KRH48474	Soybean	nucleus	20.4	23.0
KRH43430	Soybean	nucleus	21.53	22.49
KRH35957	Soybean	nucleus	22.1	21.97
KRG90812	Soybean	nucleus	22.66	21.74
KRH75373	Soybean	nucleus, plastid	22.66	21.56
KRH45262	Soybean	nucleus	21.81	21.15
KRH04558	Soybean	nucleus	20.11	19.14

Protein Annotations

EntrezGene:100807598	MapMan:15.5.7.1	Gene3D:3.30.730.10	EMBL:ACUP02003463	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	EnsemblPlantsGene:GLYMA_06G125100	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	UniProt:K7KUQ7	EnsemblPlants:KRH53432	ProteinID:KRH53432	ProteinID:KRH53432.1
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF40	SMART:SM00380
SUPFAM:SSF54171	UniParc:UPI0002339488	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:10190469..10192862

Molecular Weight (calculated)

39640.1 Da

IEP (calculated)

4.546

GRAVY (calculated)

-0.627

Length

353 amino acids

Sequence
(BLAST)

001: MEDSILCKHT VHHTVTKKLI SPKKSSQTNS TTERRIVRIS YTDPDATDSS SDEEGFPFVR QRMKRYVNQI EIETAAAEKV VRKRPAGEAC RRPAKLHSGK
101: KFRGVRQRPW GKWAAEIRDP ARRVRLWLGT YDTAEEAAMV YDNAAIRLRG PDALTNFVTP PKRDSPSPSP PPAAAETPAE VCEMKVVVTE EASGSGYDSS
201: EDHCHHNLSS PTSVLQFRSN SSEENSESQQ KAEQVLRECE GETETSLFEE TGEFLALDNM PLPAWDDVFN FETPEYPPLL FQEEENLNLL HQSQMLGETV
301: QFSSEEGFSD ESSIMLADSL IDFDRACPSP SSLCQVDDFF QDILFASDPL VLL

Best Arabidopsis Sequence Match ( AT4G27950.1 )
(BLAST)

001: MMMDEFMDLR PVKYTEHKTV IRKYTKKSSM ERKTSVRDSA RLVRVSMTDR DATDSSSDEE EFLFPRRRVK RLINEIRVEP SSSSTGDVSA SPTKDRKRIN
101: VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
201: MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
301: LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV

Arabidopsis Description

CRF4Ethylene-responsive transcription factor CRF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.