Factsheet for Solyc03g007460.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400086922	Potato	mitochondrion, nucleus	88.89	90.49
Solyc06g051840.1.1	Tomato	nucleus	53.54	60.57
VIT_16s0050g02400.t01	Wine grape	nucleus	43.18	50.15
KRH64510	Soybean	nucleus, plastid	35.1	42.9
KRH53432	Soybean	nucleus	36.87	41.36
Solyc08g081960.1.1	Tomato	nucleus	33.59	39.23
Solyc01g014720.1.1	Tomato	nucleus	16.92	38.51
KRH15980	Soybean	nucleus	31.57	38.23
Solyc06g082590.1.1	Tomato	nucleus	23.48	37.5
Solyc01g095500.2.1	Tomato	nucleus	26.77	36.18
KRH18134	Soybean	nucleus	30.3	35.82
Solyc01g008880.1.1	Tomato	nucleus	16.67	33.17
Solyc01g008890.2.1	Tomato	nucleus	16.41	21.45
Solyc05g009450.1.1	Tomato	nucleus	17.68	20.53
Solyc04g007180.1.1	Tomato	nucleus	15.66	18.51
Solyc03g119580.1.1	Tomato	nucleus	17.17	17.66

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:K4BEG9
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF40	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:Solyc03g007460.1	EnsemblPlants:Solyc03g007460.1.1	UniParc:UPI000276814A	SEG:seg	:

Description

No Description!

Coordinates

chr3:-:2014935..2016125

Molecular Weight (calculated)

43454.3 Da

IEP (calculated)

4.311

GRAVY (calculated)

-0.575

Length

396 amino acids

Sequence
(BLAST)

001: MDYHSLCPIK YTEHRNVIRK VTKPSLVKSK KLSEAAKSSQ LNPSVPRTVR ISVTDPDATD SSSDEEDLLF GRRRVKKYIN EISIETAVKC EVSSGNGKTV
101: NKRAPEPLQT KQKPMKVQPP PSAGAARKFR GVRQRPWGKW AAEIRDPARR VRLWLGTYDT AEEAAMVYDN AAIKLRGPDA LTNFSTPAKA EPEPEPEPEP
201: EISALSHSGY ESGNESRNIP SPTSVLRCTM SQSESGSGQV HVSEECPSVQ GSMECEQTVQ PFVQCAAEPL IPSAIPQDVE ECQGETSMIP DYSSDYLPTD
301: IPFLNDFFNF DGSAAEQTLL EDSTMTAVTS TTTTTTPNEF GDLCNDSLDF GNDFLFNDAD FAEFGSFDDL GDLGMDDFSQ DNSVVDYSSV DSLLAI

Best Arabidopsis Sequence Match ( AT4G27950.1 )
(BLAST)

001: MMMDEFMDLR PVKYTEHKTV IRKYTKKSSM ERKTSVRDSA RLVRVSMTDR DATDSSSDEE EFLFPRRRVK RLINEIRVEP SSSSTGDVSA SPTKDRKRIN
101: VDSTVQKPSV SGQNQKKYRG VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE PVQEQEQEPE SNMSVSISES
201: MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM
301: LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV

Arabidopsis Description

CRF4Ethylene-responsive transcription factor CRF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.