Factsheet for Solyc04g007180.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041053	Potato	nucleus	95.22	90.11
Solyc05g009450.1.1	Tomato	nucleus	54.63	53.67
VIT_01s0011g03470.t01	Wine grape	nucleus	37.91	39.69
KRH45262	Soybean	nucleus	36.42	33.52
CDY42104	Canola	nucleus	17.61	32.96
KRH75373	Soybean	nucleus, plastid	35.82	32.34
CDX84990	Canola	nucleus	23.88	32.26
KRH43430	Soybean	nucleus	32.24	31.95
KRH35957	Soybean	nucleus	33.73	31.83
KRG90812	Soybean	nucleus	34.93	31.79
AT1G68550.2	Thale cress	nucleus	28.96	29.94
CDY38591	Canola	nucleus	25.97	28.9
Bra036360.1-P	Field mustard	nucleus	24.18	28.83
CDX96010	Canola	nucleus	25.37	27.96
Bra004318.1-P	Field mustard	nucleus	25.37	27.96
CDY65135	Canola	nucleus	25.97	27.8
Bra004033.1-P	Field mustard	nucleus	26.27	27.76
Bra025170.1-P	Field mustard	nucleus	26.27	27.67
CDY40978	Canola	nucleus	20.9	27.67
CDY07380	Canola	nucleus	25.97	27.62
CDX83568	Canola	nucleus	25.67	27.48
CDY04234	Canola	nucleus	25.97	27.44
CDY13596	Canola	nucleus	25.97	27.44
Bra033923.1-P	Field mustard	nucleus	25.67	27.22
AT3G25890.2	Thale cress	nucleus	26.87	27.11
GSMUA_Achr9P19330_001	Banana	mitochondrion	20.0	27.02
CDY44887	Canola	nucleus	25.37	26.9
KRH04558	Soybean	nucleus	29.55	26.68
AT1G25470.1	Thale cress	nucleus	22.69	26.48
GSMUA_Achr4P06840_001	Banana	nucleus	20.0	26.38
Solyc01g014720.1.1	Tomato	nucleus	12.84	24.71
Bra024743.1-P	Field mustard	plastid	24.18	24.25
CDX99741	Canola	nucleus	22.39	23.81
GSMUA_Achr4P13800_001	Banana	nucleus	19.1	23.53
GSMUA_Achr1P23090_001	Banana	nucleus	19.7	22.68
Solyc06g082590.1.1	Tomato	nucleus	16.72	22.58
Solyc08g081960.1.1	Tomato	nucleus	20.9	20.65
Solyc03g119580.1.1	Tomato	nucleus	23.58	20.52
EER98690	Sorghum	nucleus	17.01	20.21
Solyc01g095500.2.1	Tomato	nucleus	17.61	20.14
Os09t0309700-01	Rice	nucleus	19.1	20.13
Solyc01g008880.1.1	Tomato	nucleus	11.94	20.1
TraesCS5B01G178600.1	Wheat	nucleus	17.01	18.45
TraesCS5A01G180800.1	Wheat	nucleus	16.72	18.06
TraesCS5D01G185300.1	Wheat	nucleus	16.72	18.06
HORVU5Hr1G055190.2	Barley	nucleus	16.42	17.8
Solyc06g051840.1.1	Tomato	nucleus	18.51	17.71
OQU89260	Sorghum	nucleus	15.22	17.71
Solyc03g007460.1.1	Tomato	nucleus	18.51	15.66
Zm00001d020043_P001	Maize	plastid	17.01	14.84
Solyc01g008890.2.1	Tomato	nucleus	12.84	14.19
GSMUA_Achr10P...	Banana	vacuole	22.39	12.71

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:K4BNM5
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF61	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:Solyc04g007180.1	EnsemblPlants:Solyc04g007180.1.1	UniParc:UPI00027667CF	SEG:seg	:

Description

No Description!

Coordinates

chr4:+:874498..875505

Molecular Weight (calculated)

37492.6 Da

IEP (calculated)

4.529

GRAVY (calculated)

-0.651

Length

335 amino acids

Sequence
(BLAST)

001: MKKKVDTNRL VRKIRIVCND PDATDDSSDD DSRCKRFVRE IKLQIGNSFN LRKASEIECS FQDSNNGEKK TKKEGLVKPL IQPRPAGGLL SKYKGVRQRK
101: WGKWAAEIRD PFKGRRVWLG TYNTAVEASR AYELKRLEFE TRAKISRTNV SKQSSGSMVS EYQNQSQNVA SGVSDDYAES SVSRTSHSLS SSSVLELDTL
201: TSVSASAPIL RLNGPNDNEK VSNVAPLEAN VVEQEVPELA MMEETLPLSQ IGESMDLDLE LESFLIGADD FNQHLDEFVV NDFEDPPVYL IEGDEQLPTG
301: LPDFDDFNFD GYNESFSWMD DAPRTNGTPL NIACP

Best Arabidopsis Sequence Match ( AT3G25890.2 )
(BLAST)

001: MAERKKRSSI QTNKPNKKPM KKKPFQLNHL PGLSEDLKTM RKLRFVVNDP YATDYSSSEE EERSQRRKRY VCEIDLPFAQ AATQAESESS YCQESNNNGV
101: SKTKISACSK KVLRSKASPV VGRSSTTVSK PVGVRQRKWG KWAAEIRHPI TKVRTWLGTY ETLEQAADAY ATKKLEFDAL AAATSAASSV LSNESGSMIS
201: ASGSSIDLDK KLVDSTLDQQ AGESKKASFD FDFADLQIPE MGCFIDDSFI PNACELDFLL TEENNNQMLD DYCGIDDLDI IGLECDGPSE LPDYDFSDVE
301: IDLGLIGTTI DKYAFVDHIA TTTPTPLNIA CP

Arabidopsis Description

ERF119Ethylene-responsive transcription factor ERF119 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUA2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.