Factsheet for Bra004318.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96010	Canola	nucleus	98.68	98.68
CDY38591	Canola	nucleus	91.45	92.36
Bra004033.1-P	Field mustard	nucleus	65.46	62.78
Bra033923.1-P	Field mustard	nucleus	57.89	55.7
AT1G68550.2	Thale cress	nucleus	57.24	53.7
Bra036360.1-P	Field mustard	nucleus	36.18	39.15
Bra025170.1-P	Field mustard	nucleus	38.82	37.11
Bra024743.1-P	Field mustard	plastid	38.16	34.73
Bra012352.1-P	Field mustard	nucleus	15.46	31.97
VIT_01s0011g03470.t01	Wine grape	nucleus	32.57	30.94
KRH45262	Soybean	nucleus	35.53	29.67
KRH43430	Soybean	nucleus	32.89	29.59
KRH35957	Soybean	nucleus	34.54	29.58
Bra016367.1-P	Field mustard	nucleus	14.8	28.48
Solyc05g009450.1.1	Tomato	nucleus	31.58	28.15
Bra007963.1-P	Field mustard	nucleus	15.46	28.14
KRH75373	Soybean	nucleus, plastid	34.21	28.03
PGSC0003DMT400037698	Potato	nucleus	31.58	27.91
Bra003936.1-P	Field mustard	nucleus	15.13	27.88
KRG90812	Soybean	nucleus	33.22	27.45
GSMUA_Achr9P19330_001	Banana	mitochondrion	21.05	25.81
KRH04558	Soybean	nucleus	31.25	25.61
Solyc04g007180.1.1	Tomato	nucleus	27.96	25.37
PGSC0003DMT400041053	Potato	nucleus	28.95	24.86
GSMUA_Achr4P13800_001	Banana	nucleus	22.04	24.63
GSMUA_Achr4P06840_001	Banana	nucleus	19.41	23.23
EER98690	Sorghum	nucleus	21.05	22.7
Bra004548.1-P	Field mustard	nucleus	19.74	22.3
Os09t0309700-01	Rice	nucleus	23.03	22.01
GSMUA_Achr1P23090_001	Banana	nucleus	21.05	21.99
Bra019270.1-P	Field mustard	nucleus	22.37	21.94
HORVU5Hr1G055190.2	Barley	nucleus	21.71	21.36
Bra003462.1-P	Field mustard	nucleus	19.74	21.2
TraesCS5B01G178600.1	Wheat	nucleus	21.38	21.04
TraesCS5D01G185300.1	Wheat	nucleus	21.38	20.97
TraesCS5A01G180800.1	Wheat	nucleus	21.38	20.97
Bra013730.1-P	Field mustard	nucleus	21.38	20.63
OQU89260	Sorghum	nucleus	19.41	20.49
Bra029079.1-P	Field mustard	nucleus	22.7	20.12
Bra000736.1-P	Field mustard	nucleus	17.43	19.41
Bra040839.1-P	Field mustard	nucleus	20.39	19.08
Bra022643.1-P	Field mustard	nucleus	21.38	18.47
Bra003068.1-P	Field mustard	nucleus	22.04	18.41
Bra026295.1-P	Field mustard	nucleus	20.39	18.4
Bra010389.1-P	Field mustard	nucleus	19.41	17.99
Zm00001d020043_P001	Maize	plastid	22.37	17.71
GSMUA_Achr10P...	Banana	vacuole	23.68	12.2

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra004318
EnsemblPlants:Bra004318.1	EnsemblPlants:Bra004318.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:M4CJD4	PFAM:PF00847	PIRSF:PIRSF038123
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF21	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI0002541751	SEG:seg	:	:	:	:

Description

AT1G68550 (E=2e-057) | AP2 domain-containing transcription factor, putative

Coordinates

chrA07:-:17944669..17945583

Molecular Weight (calculated)

33755.2 Da

IEP (calculated)

4.654

GRAVY (calculated)

-0.624

Length

304 amino acids

Sequence
(BLAST)

001: MVGIRKQLCL SSLSDTKKPK RSNPQETQQQ PLRKVRILVN DPYATDDSSS DEGETKMRRI VRVVNFPPLL ESATPSVEPT SVSSSEDSTK TISKKAAAAA
101: ASRPRLSKKP VGVRQRKWGK WAAEIRHPIT KNRTWLGTFE TEEAAHQAYK DKRKEYDALL ATSNDSVSVS ETSQCSRSSP LEQDTSASPP ALKEEIKITT
201: TPTAGVDSSS KEVLFGFNFA ELPIPDLGFF AEEGQMGDLG FFTEEHDQLN LDCLFTDDQF DDFTMLGFED SGPSELPDWD FPDAEFDSSF FFADQHIPLK
301: SLAA

Best Arabidopsis Sequence Match ( AT1G68550.1 )
(BLAST)

001: MVAIRKEQSL SGVSSEIKKR AKRNTLSSLP QETQPLRKVR IIVNDPYATD DSSSDEEELK VPKPRKMKRI VREINFPSME VSEQPSESSS QDSTKTDGKI
101: AVSASPAVPR KKPVGVRQRK WGKWAAEIRD PIKKTRTWLG TFDTLEEAAK AYDAKKLEFD AIVAGNVSTT KRDVSSSETS QCSRSSPVVP VEQDDTSASA
201: LTCVNNPDDV STVAPTAPTP NVPAGGNKET LFDFDFTNLQ IPDFGFLAEE QQDLDFDCFL ADDQFDDFGL LDDIQGFEDN GPSALPDFDF ADVEDLQLAD
301: SSFGFLDQLA PINISCPLKS FAAS

Arabidopsis Description

ERF118Ethylene-responsive transcription factor ERF118 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA27]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.